Array 1 215552-216242 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000011.1 Haloferax mucosum ATCC BAA-1512 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 215552 30 100.0 36 .............................. GTCTTGCTCGAACCGTCGCCGTTCGAAGACCACGGC 215618 30 100.0 36 .............................. TCGGCGTACACGTTCGACGAGCCGGTAAGGTTCATC 215684 30 100.0 37 .............................. TCCAATTGGATCGTCCACCGGCTCTGGCGGCGGTCGA 215751 30 100.0 35 .............................. AAAGTTGCCTACCTCACCGACCAGGGATACGAGGT 215816 30 100.0 37 .............................. CGTCGTCGTGAACGCCGTGCACCAACTTAGGCGCGTA 215883 30 100.0 37 .............................. GACCTCGCGCCAGTTCACTTCAGCGACGCTCGCGCGG 215950 30 100.0 36 .............................. CGTTCGCACTTTACGGTGGCAGATACACGGCTAAGC 216016 30 100.0 36 .............................. GCGGATGGTGGTCGCACATGCATCGGCGACGACCTC 216082 30 100.0 35 .............................. CTTCGTGAACCGCGTTGAAGCGATAGGCGTACTCT 216147 30 100.0 36 .............................. GTCCAGCGTATAGCCGATGATACCCTCCGACCGATA 216213 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : TGTCACGTGTCCCGGTCTTCCCGTTCGGGACAGTGAGTCGCCACTTCCCCTGGTCGTCGAGGCGTTCGAAGTGTCGCGGCTCGACGTTCCGCACTTCGTCGCTACGGAGACCGTGGAGTGCGAGGTCCAGAGCGATGCGTCGACGTGGGTATTCGTCCTCGACGAGCGAGAGGAGTTTAGCCTGCTCGTCGCGGGAGAGCCATAGTCGCTTTCCTGCCTTCGACGGATATGGACGTGCCTGCATGGTTCCGGTCTTGGTAGCTATCTCTGTATTCCGGAACCTTAGCTAGTCGGGTGGGGTCGATCAAGCCGGGAATCAGGCCGATTTGGTGGCCTCGGGGTGTCGGAGGTTACGAGAATAGCCGATTCTCGGAAGTTCGTTTCGAGGATTCTACCTGAATTTCCATCGACCCCCCGGGGGTTTGGGGCTATTGGAGGTCGACAGAAACTGTTGAGTGTGAGCAGTGCGTAGGAGGCTGTGTGCCCCTGAATTGGGCATG # Right flank : CCCCGTTGAAGTCCTCGTCTCTGGAGAGGATATTCGGGTTCGCTCTTGTGTAGCACATTGTTGATGTAGAGCAGTCTTGCAATTCTGTAGTTCGGTTATCGAAATGAGAATCGAGTCGTTGGGAGCTCAATCAGATGTTCTCACGTCGACTGTGATGATGACATCGGCAACCTCATAAACGACTTCGTAAACCCCTTCGAATTGTGCTATTCTCATTGTAATCACCGCTCCAGTATCTCGACTCGCTTTTCGTAGAACTCGTGCTCGGCCTCGAGGAGATCGCGCTGCTCGTCAACGTCAGCAGGATGCTCTATCGACACCAGCAACGACACCAACCAGACTGGCAATCTCGACTTGCCCTGGAGTGACGCCATCGTGTCCTCGATATCAGACAGCCGAGACCGACAAAACCCGAGTTTGATCCGACGGCGTAAGCGACGGATCATCGCTGGACCTCCAAGGCGACGCTCCACGAGTCGATCCCGAACAACCCGAACGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 462-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000002.1 Haloferax mucosum ATCC BAA-1512 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 461 29 96.7 36 ...................-.......... GCCTTCTTAATCTCCCTCTTGTGTTTCTTGATAGAC 396 30 100.0 36 .............................. AGGCCACTGAGGACACCGATTATTTAAACCAAGGGT 330 30 100.0 38 .............................. CAGGACGTCCACGAACCGGAGTACGATGCGCCAATCTT 262 30 100.0 33 .............................. CAGTCCCAAGAGTCTAAACGAAGTCCGCACTGC 199 30 100.0 35 .............................. GTCATAGACCACAGGGACGGCGCGGAAGAACACGT 134 30 100.0 34 .............................. ATCACGAACTGGAACCCGTCTCCGGTCGTGTGGC 70 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 99.5 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CCCTAGTTGGGTTGAAGCGCCGCGCGCTCTCGGACCTCGGCGACCCGATATCCG # Right flank : CCCGTTCGAGGACGGCGTTGGCGGCTGACTCGCCGAGTTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 561-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000014.1 Haloferax mucosum ATCC BAA-1512 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 560 30 100.0 37 .............................. TGGTTCGGATGGTCGAAATCCTTACCACAGTTGTAGC 493 30 100.0 36 .............................. AAACAGGTTTCGGCGTGGGTTCTCGTCGTTGAGGGA 427 30 100.0 35 .............................. TGTGGATAGCGAGGAAGCAAGAGCAAGAACGACAA 362 30 100.0 36 .............................. ACAGACGCCAATATCGAAGTCAGACTGTGGGATGAA 296 30 100.0 38 .............................. ACGGCATGGAACCGGACTTTGCGGCCAAGAAGCGGCTG 228 30 100.0 37 .............................. AGTCAGTGCGGAGTTTGCCGTGATGTCTTCGATAAGT 161 30 100.0 36 .............................. GTCAGTGATGGTGAGTTCGATTGTAACCTGACCGTT 95 30 100.0 36 .............................. TTCGTCGTCTGCGGCGAACTCGTCGCCTGCGACGTC 29 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.6 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CTTCCCGCGGAGAGGCGAAGAGCACAGAACGCCGGTCTCCAGCTCGAATCTCACCCCACGGGAAAATGTTGCTGAAGGCGAGTCCAAGTGGGTGGCCATTGTCGTGTTCACGGTCGAACTTCGACCCTTCGAGTGCCCGCCACACACGGCCTCTAAGTTTGTTATGGAACGCGTGTTGGTAGGTCGCGTCACACTGCGCGTTCAAGCGGACTAGCAAGCGCATAGCGGTGCATCACCTCCAAGATGATAGGTAACATCAGTCATATTAGTTGTTCTTTGAGCAGACATATAAATTCTAACGTGTCTAAAAATGGGATGAACCACTGACATACCAAACAGGCACAAACTACTTCACGTGAAGGGTCTGCATTAGTGGAACACTCTAATTTAGAACTTCTTGGTCCGTCAACCCCCCGGGGTTTGGGGGGCTATTGGAGGTCGACGGAAACTGTTGAGTGTGAGCAGTGTGTAGAGGTCTGTGTACCCCTGAATTGGGCATG # Right flank : G # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 10126-10686 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000014.1 Haloferax mucosum ATCC BAA-1512 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10126 30 100.0 37 .............................. TCACTCAGCGGTCGGATGAACGCGAGGATGAAATAGC 10193 30 100.0 35 .............................. TACCAGCGAGGAATTGCAGTGCTCCCGAGGTTTGG 10258 30 100.0 36 .............................. AGATGAATATCGGAATTGGCGGACATGAACGCCGCC 10324 30 100.0 38 .............................. TATGAGTGCCCCATGCGGGTGCTCGTAGCCTTTAGCCG 10392 30 100.0 36 .............................. CAGGCAGATGGACGCTCTGTACAAACGCCATCGCGC 10458 30 100.0 38 .............................. AACTTCTTCGAAAGTCTCATACTCATTTGCCTTGGCGA 10526 30 100.0 36 .............................. CTCCGTCCGAGTGCGGATAATAGCGTCCGAAACACG 10592 30 100.0 35 .............................. GTGCCCCGGTCCTCGTGGATGCAATCGAACCACTC 10657 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CTCGAACAGACTATCGAGCATCCAGAATTGAACCGAAAGGTGAGCTACCAGTACCTCCTCCGAATTGAGGCATACAAACTCAAGAAGCACCTCCTCACTGGTGAGGAGTACGTCCCGTTCAAACGGTGGTGGTAGGCTGTGGTGTATATTATCGTCGTCTACGACATGCGTGCCGACCGAACGCGATTGATGCTCAATTTCCTCAGAAAATATCTCACTCACGTTCAAAACTCTGTCTTCGAGGGCGCGGTTACCGAGGGAGACCTCGAAACGATACGAAACCATACGCAATCTCTATTGAAACCGGACGAATCAGCGATTATCTATCGGATTGGCTCCGATAAATACGTCGAACGAACCGTTATCGGAGACGACCCGACTGACGATTCGCAGTTTCTGTAGCAGTCAACCCCCCCGGGGTTTGTGGACTATTGGAGGTCGACGGAAACATTTGAGTGGCAACCACCTGTATGGGGACTGTGGCACTCGAATTTGCCATG # Right flank : GTACCGAGTCCGTCGCCAACACTCACGTTCGCATCGGGTTACAGACGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 27939-26709 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000019.1 Haloferax mucosum ATCC BAA-1512 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 27938 30 100.0 38 .............................. GTAATCGTCTCTGTCGAGCGTTACCTGTTCGTCTGTCG 27870 30 100.0 38 .............................. TACCAGCGAGGAATTGCAGTGCACCCGACGTTTGGAGT 27802 30 100.0 36 .............................. CCCCAACACCTGTAGCGTGGGCCGTATCGCGTAATC 27736 30 100.0 35 .............................. TCGTCAATCGATGATATCCCAAGCACGGACGCTTT 27671 30 100.0 38 .............................. CTCACCTGCTCGATGTCGCGGCACGTATCGGTTTAGGT 27603 30 96.7 38 .........A.................... TGGCACGGCATTGAGTGATGCAAGCGGGACTTCGGCGG 27535 30 100.0 36 .............................. CACACACCGCCAAACTTACTCATCGGTCCACCTGCG 27469 30 100.0 36 .............................. TCCGTACGTTCCGTGGAACTGTCGTTCCGCCTCGTA 27403 30 100.0 36 .............................. TTTTTATGCCGCGCGACTCAACGTCCGAGCAACCCG 27337 30 100.0 35 .............................. AACCGGTATCGTTACTTGGCCGTTACGAAGGAGTT 27272 30 100.0 37 .............................. GGGTCTATCTTGTTGAGCAACAGCTTAACCAGCGTGT 27205 30 100.0 38 .............................. CTGTGCTAGGGCACCTGCCATGTTCCAGAAATCACCCT 27137 30 100.0 36 .............................. AACATGGACGCGGAGGTAATCCCGGTTCAGGACACC 27071 30 100.0 37 .............................. TTCGCCGTGGAAGTCCATCCAGTCGCTTTTAATCTTG 27004 30 100.0 35 .............................. ACCCTGACGCCCCTGAGGTGTCGGTATGAGATATT 26939 30 100.0 37 .............................. CTGCAGTAAAGTGGACTGTGCCGACTGACGTGGTGGC 26872 30 100.0 36 .............................. CATTTCTCGGCGTAAATACTCGTTTTCGCACGATGA 26806 30 100.0 38 .............................. TTTCTCCCCGTCGAGTCGGCCGAACCGGTCGAATACGT 26738 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 99.7 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : TATCATCACCTCATGACTGGGTTGTCTCCTCGTCT # Right flank : TGCCTAGCCGATCATATAAGGGCTGGTCGCGCTAGCTGGTCAGCGAGCGCTGGAAGGTGATTTTGAAGCGTTTGGCGGACTGAAAAGCAAACGTTCGGGCGCTATCTGAACTGGAGCGTCACATCATGGACTGGAGGTAGTCTTGGAGCGATTCAAGGCGATGTTCCCAGAAGACTTCGATGTCGTCCCCGAGCAGTGTCTCGATTTGACTGTCAGGAATCCATCCTGCAACAGCAGCACCAACACGTGCATTCGGGAACCCGGCCCGCCAGTCGGACCCCTTGTTACGGATTTCCTTGATTCGCTTGTACGAATCGATTTTCACACCAATTGCTTTTGCTTCAAGGAATAGAATCTCGTCTTTCGCTGGTCGAGCAACGAAATCTGCCTTCTGGTCGTCACCAGGACATGCAACCTTCGTTTCACTCACGAACGTACCAGCGGGAAGGTCGTCGATATCAGAAATCGTAGAGCTTCGAGACACGTGTCGCAGGCCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2-357 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000006.1 Haloferax mucosum ATCC BAA-1512 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2 30 100.0 34 .............................. CTGACGTGCCATGTACCATGCTGTGGTCCCGGCG 66 30 100.0 35 .............................. GTCTAGCAAACGATCCCCTAATCGGGCGATGGCTA 131 30 100.0 36 .............................. CTACGACCCAGTGCAGACAACTCTGTCCGTGCGTAT 197 30 100.0 36 .............................. AGAGGCTCTTTGTGCTATTGTCTCCTTGGCTTCCGT 263 30 100.0 35 .............................. CGAGGTCGCGTACTCCCACTTGTGGAGGTAATCGA 328 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GG # Right flank : CAAGTTGTGCAGTGTCGCCCACTAGCCAGTCACTGACCCGGCGACTAGACACACAATTGGAGTCCCAAGATACTGAATGGAAAGTGTATGCTTCGGAAAGCGCACGCCAGCGTTCGACAAAAGACGGTATCTGCGAGGGGTGTTCGTCTCCGGGTTCGCTTAGACGCTTGCAGTAGTGCCACTGGACCCGACCTCGTCGCGCACGACGAAGTAGAGAATCCAGACGATGACACCGCCCAAGAACGCTCCGGTGCCCCACGCGAGCGCGTGCCTACTGTTTCGGCGCTTTGCGTCTCGGTAGACGAAGAAGGCCACGACTAACGGTACGGCGAGTAGTAGCCCGATAAAGAATAAAGCGAACAGTTCCGGGCCGCCGGGGACGCCTACTTGAAGGATAGACAGCATGCCGTCTGTTTTTCAGTTATATACACAAATAGCTTCGGTTGGACGTCGGGAACTTGCGAATAAGAAGCTTTCTGGGAGGGAGACGCGTACGGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 48-207 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000004.1 Haloferax mucosum ATCC BAA-1512 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 48 30 100.0 36 .............................. AAGACGTACACGCCGCTATCGCCGTACACCGGCGCG 114 30 100.0 34 .............................. GCCTGCCGGGTGTCTCGATGCTCTCCACCGCCGT 178 30 93.3 0 .......................G....A. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GGTTGAAGCATAGATATGCCATGGATTAAGGCAGAGGTCGATGCAGAG # Right flank : CTCAAAAAGCACGTGAGATGCTGTTACACTACTCGTGAGCTATCGCTATCATCCGAGACCACAACAGCCGTTCAGTAAAAACAACACTCGAAGAACCAATACCGGTCACTCAAAAGTCGCCGAACCGACCGAAACTGACGGCTGAAACCGTCAGTTAGCCAGCGGCGCCTGTACTTCGCGTTCCGCGTCGTCCGTATCTACGGTTCCCTCGGCGAAGACGACACCGTGGACACCCTCGCGTTCCTTCGCGCTCGCCGCGACGCGGACGAACGTCGCGTTGTCGCGCGCGGCGGCGAGCGTGTGGCCGCCGCAGTAGCTAATCCCAGAGCGGACGCCGCCGAGGAACTCCTCGACGAGCGGTTCGACCGGACCTTTGTAGGGCGTGAGCGCTTCGATTCCCTCGCCGGTTGCGACGTCACTTTCCTTGTCGTCGCGGTCGTCGGCGGCCTCGGTCGAGGCCATGCCGCGCGAGCGCTTGTACTGCTCGCCATCGACCTCGA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 285216-285068 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000004.1 Haloferax mucosum ATCC BAA-1512 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ============================================ ================== 285215 20 100.0 44 .................... GGGTTGAAGCCTCACCCCGGACGCAGACAACTCTGTTCGGGATT 285151 20 100.0 44 .................... AGGTTGAAGCACTCTGGTGTTGACGGAGGTTTATACAAAAACGA 285087 20 95.0 0 .............T...... | ========== ====== ====== ====== ==================== ============================================ ================== 3 20 98.3 44 GTTACAGACGAACCCTAGTT # Left flank : TCGTCTAACTCTAGGAGCCTGTGATGATGCGCGATT # Right flank : GGCTTAGAGTCACGGACGGCTTACTTGAACACGCCAAATTGGTACGCTAACCGCCAATGCTCTGCGCATATTCGTTCGCAAAAATCTCAACAACCCGCAAATCAAATAATCACTCACTCCTCGCATCCCAGTACAATAACCCCGCGGCGACGACCAAACACACCGCCAGCCCAGCGAACGCGACGCCGTAGTTCAGATAGGTCGCTACGATGCCGACGTAGGCGGGACCGACCGCGTTCGCACCGAGGAACAACGCCCGTGCGGCCCCGAGGTCGGCCCCGCGGTCGGCATCGGGGGCGTTATCGACGATAATCGCATCGGCGAGTGGGAACTCCATCTTGTAGCCGACGGCGAGAACGACGATAGCGATGTAGATGACCGGCCGGACAGCGACGGCCGACAGGACGGCGAGTGACGCCGCGGCGATGAGCAGTCCGACGACCGCAATCGACTCGCGCCGGAATCGGTCGCTCAGCCCGCCGGCGATGGGCTTGATACCG # Questionable array : NO Score: 4.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:-0.75, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 35916-36143 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000008.1 Haloferax mucosum ATCC BAA-1512 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 35916 30 100.0 35 .............................. GCTGACCCCAACGTGTGGACGTCTATCTTCGCCGA 35981 30 100.0 36 .............................. GGGCGACACGAATCCCATCCATCTCGACGAGGAGTA 36047 30 100.0 37 .............................. ACGGATGTTTTGCACGGGGAGTGCGACCTCTTGGTGT 36114 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GCCCTCTCGGAAGGCGGGAGACACCGTCGAATCGACGCTTCTCCAGGACCACACAGAACTGCGTCACGTCTCGGACCACGAGCACGAACATCACGACGCGCTCACCACCGAGTTACTCACGTCGAGTCGTGAGCTTCCGTTCGTCGGCATCTGTCTCCTCGAACCCGGGACTGTCGTCGAGATCAAGAGCGCGATGGTCGTCTACGGCGAAGCGCAGCGCCGCGGACGGTTCTTACTCCGACGGAGCCAACACGACCACCTGCTCGAAGCCGGCGGTGTCTACCTCTTCGCCGTCTGTGCGCCGACCCCTTCGCGTGGTATCATCGCCGCGAAGATCGTCCCGGCGAGCCTCGTCGATGAATTTGACTTCTCGGAAATTCGTTTTGAGGATTCTCCTAAATTTCCATCGACCTCCAGGGGTTTGGGGGTTATTGGAGGTCGACGGAAACTGTTGAGTGTGGGCAGTGCATAGAACGTTGTGTGCCCCTGAATTGGGCATG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 397-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000007.1 Haloferax mucosum ATCC BAA-1512 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 396 30 100.0 35 .............................. CTCAAACGCACTCAGGAGTGTGTTGAGCACTGCCG 331 30 100.0 33 .............................. ACCGAGTGTTTTGAGGAAACGAGTAATTTAGCG 268 30 100.0 37 .............................. GGCCTTGCCACGAAGTTCAAGGCGCTGAGTTCTCGTG 201 30 100.0 36 .............................. TCGGTGGCGAACTCGAAGCCGGAGATGCGGACGTCC 135 30 100.0 36 .............................. GTTCCCAGAGAATAGGTCGTCAAGCCTATCCGTGTT 69 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GGCGTCCTCGAACGCGGCTTGCTGTCCGCTGTTAAGTTTACTGTACTTGACGACCTTGGTGGACTCAACTGTGGTGGTTGGACTCGCAGTCGGTGTCATTGTGGGACTCTCGGTTTCAGTTGGGGACGTATCGGCACCACCGGAACACCCGGCAAGGAATACTAGTCCAGCAAGGAGGGCAACGAGGGCGAGTTTTTCATATTGGAAGGTTGATATATCGGGTTGAAAATTTTGTGGGAGCGTACTGCTACCGGAACGATTGCAGACTACGTGCACCCACTCATCGGATAATTCGATAGCGGTCCAGTAGAATACTCGTCAGGTGAGGCTCGGCTGGATCTGACTCAACTTCCGCAAAAAACCCGGCTCACAGAAGTTCGTTTCGAGGGTTCTTCCTGAATTTCCATCGACCCCCGGGGGTTTGAGGGTTATTGGAGGTCGACGGAAACTGTTGAGTGTGGGCAGTGCGTAGAAGGCTGTGTGCCCCTGAACTGGGCATG # Right flank : CTTCCTCCGGGTCGAACGACGCCGGGTGCATCTCACCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 563-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000009.1 Haloferax mucosum ATCC BAA-1512 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 562 30 100.0 34 .............................. CAAGTCCCGCAGGCGGCCCGGGCGGGCGAGGCGG 498 30 100.0 38 .............................. ACCAATCTTGATGTTAATATGGCGGTGAAAGCGACACC 430 30 100.0 37 .............................. GATTCGCACAACCGCCGAGTCAACGATATCCCTAATC 363 30 100.0 36 .............................. CTCGACCCGGAGGTAGAGGAGCCACTCGAGTACGAG 297 30 100.0 33 .............................. CGGGCGGTATGGTCGGAGTGCCGGATAGCAACG 234 30 100.0 34 .............................. GGATAATCGCCGACGATGCCACCCTTCGCGGCCC 170 30 100.0 42 .............................. CTGCCACTCGAAGTAGATTGCATCGCAGTTGTCGCACGTACC 98 30 100.0 36 .............................. CACGCGGTGGCTCCAGTCACGCACCGACCTGTTGAT 32 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 9 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GCTCCGCCGTTGGCGTCGAGTGGCGATTGACCGGGATTCCCACGAGGTCCTCTGCAATGACTCGGAGGACGTCGCTGCGAGTCGGGTGCTTCCAGCAGTTGACGACTGTTGAGTCGAACTCCTCGCCGTCGTCCTCGAGGAGCGTCAGGGCTAGTTTCGCCAGCGTCGATTTCCCTGTGCCAGTAGGCCCGAAGGCGTAGACGTGGTCACGAGCGTTCATCCTCGGTCGGAGCGCCGAGAGGAGGGCATCCATCTCGTCGCGGCGGTGGAGGATGAGCTCGTGGTCGGGGACGACCTCGTCATCGAGTACTCGGGGGTCGTGGATCATGTCTGTCGATTTTTCGTCAGGGGGTGATAACGATTCGGACGATAGAACAGCGTGCAGGATTTTCCAGTGTCATCTATGTCGACCCCCGGGGGTTTGGGGGGTATTGGAGGTCGACGGAAACACTTGAGTGGGAACCGCCTGTAGAGTACTTGTGGCACTTAAATCGGCCATG # Right flank : CCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 49657-49295 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLN01000009.1 Haloferax mucosum ATCC BAA-1512 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 49656 30 100.0 37 .............................. TCGGCGTTGGACGGTGTGAGCCTCTTGAGACGTGTAC 49589 30 100.0 37 .............................. CCGAGATGACGACGGCGATAGAAGGGACGAACGACCG 49522 30 100.0 39 .............................. GTCTCTGCGAGTCCGTGCGTCCAGTCCTCCAGCCGGTCC 49453 30 100.0 37 .............................. GAGTACGTCGAGGGTGAGGTTGTCGAACCTGATGAAT 49386 30 100.0 32 .............................. AGAGGATGTTGCCGGCGAGTCACTGATTGCGG 49324 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 100.0 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GTCCACCGGCTCTGGCGGCGGTCGAATCCACACGG # Right flank : ACGTAGTCAAAACCCAAGGACGAGCAAGGGGGCATAACAAGCTAAGGCGTTATGCCCCCCACACATCTCCTGGTTACAGAGAACCTGAGTCGGCTCAGTCCTGCTTGAACTGCACTTGCCAGAACCGCGACCGAACGTACCGCTGGTCACACGTCGGCTCATGGGACAGTTCGTCGATCCCAGGCGAGCGCTGGCGGGTCAACGGAAGTGAGGCCCCACACTCACCACAAACGAGCGCGGCAGGCTCGCCCTTCCGCAATCCATCGTTCGAGATCGACGTCTCCGAGCGGACGATCTCGAAGTGCGTATCTGAGGCGGAGAACGACCGACCCATCACTCCTCACCCCACGGGAGCAGATCAGTCTCAGTCAGCTTCGCATCAACAACGAGCGCAAGCGCCGCGACGGCGACGAGCACGCCACTGACGTCGGTCTTACCTGCGACCCAGACGACGACCGCGAGTGCGCCAACCCCAAGCGTGCCACGACGGAACCGCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //