Array 1 1042766-1045292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFTH010000001.1 Klebsiella pneumoniae subsp. pneumoniae strain mS2H5 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1042766 29 100.0 32 ............................. GCTCTGGCAGAGGGAGAGATCTCCGACTTTTA 1042827 29 100.0 32 ............................. AGGACGGCGAGCTGATCGCCGGACACGGTCGA 1042888 29 100.0 32 ............................. GGATACAAATCCAAACAGCGAGCCATTTTCCT 1042949 29 100.0 32 ............................. TTTATCGGACCGGGCGCGGACACGCAGACAAC 1043010 29 100.0 32 ............................. GCGGGTTAGTTATCCATGGTGCATAGGGGCGA 1043071 29 100.0 32 ............................. TCACTTGATAGTTTATCTCGCCGCCGTGGCGC 1043132 29 100.0 32 ............................. GTGCGGAACAAACCAGTAGGTGTCCAGGTCGT 1043193 29 96.6 32 ............................T TTTTTTGACGCGTTCGGACTTCAGGTAATATT 1043254 29 100.0 32 ............................. GGTTTACCAGCGGTAAAACAGCAGGAAGGAGA 1043315 29 96.6 32 ....................T........ GTCAGATCACGTCAACCACGCTTGATTTTACC 1043376 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 1043437 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 1043498 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 1043559 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 1043620 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 1043681 29 100.0 32 ............................. CTCGGTGACCGGCAGATCGTTTTGAAACACAT 1043742 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 1043803 29 100.0 32 ............................. CCAATTCATTAAAATACTCTGCAAGTATATCG 1043864 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 1043925 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 1043986 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 1044047 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 1044108 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 1044169 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1044230 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 1044291 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 1044352 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 1044413 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 1044474 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1044535 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1044596 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1044657 29 100.0 32 ............................. AACGTAATTGGCTTACGGGGCGGTCGGCACAA 1044718 29 100.0 32 ............................. TCGCCGCCTGTTTTTGTCTCTTTCCGGGTGAG 1044779 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1044840 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1044901 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1044962 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1045023 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1045084 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1045145 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1045206 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1045264 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30772-31892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFTH010000002.1 Klebsiella pneumoniae subsp. pneumoniae strain mS2H5 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30772 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 30833 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 30894 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 30955 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 31016 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [31070] 31070 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 31131 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 31192 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 31253 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 31314 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 31375 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 31436 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 31497 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [31508] 31559 29 86.2 32 ....C........T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [31563] 31621 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [31626] 31683 29 96.6 31 ..............C.............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 31743 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 31804 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 31865 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //