Array 1 1069759-1070397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADJH010000002.1 Escherichia coli strain NCTC10963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1069759 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 1069820 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 1069881 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 1069942 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 1070003 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 1070064 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1070125 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1070186 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1070247 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1070308 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1070369 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGCTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1098422-1100093 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADJH010000002.1 Escherichia coli strain NCTC10963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1098422 29 79.3 28 ......................ACTCT.T AAAAGTCTGGTTCACGAATATCAAAAGG 1098479 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 1098540 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 1098601 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 1098662 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 1098723 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 1098784 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 1098845 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 1098906 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 1098967 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 1099028 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 1099089 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 1099150 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 1099211 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 1099272 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 1099333 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 1099394 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 1099455 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1099516 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1099577 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1099638 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1099699 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1099760 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 1099821 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 1099882 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 1099943 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 1100004 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1100065 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3670217-3670419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADJH010000002.1 Escherichia coli strain NCTC10963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3670217 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 3670278 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTAAAAGTTGGC 3670338 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 3670394 26 85.7 0 ................A...-A..-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //