Array 1 127063-126030 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUI01000002.1 Thermococcus sp. LS2 NODE_2_length_358036_cov_111.068093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 127062 30 100.0 36 .............................. CGTAGTCGGGATCGCGTCTGATTTTCTTCCTCCTTT 126996 30 100.0 38 .............................. AAGACCCACGCGATAATGTAAAAGATGTTCAGCACAAA 126928 30 100.0 37 .............................. TATCCCTAACCGCTGCAACCATTATATTACCATTTTG 126861 30 100.0 37 .............................. GTATCTTCGTCAAACCATACTGCATGTTGCTTAGGAT 126794 30 100.0 41 .............................. ACCAGCTAAGCCTTGAGGACATTAACGCAATGGTCGAGAAC 126723 30 100.0 34 .............................. TGTGGATTATCGCGAGAAGCCAAGAGAAAGACGT 126659 30 100.0 36 .............................. GAGGGCTTTATGCCCGATGGGGTTAAGCAAAAGGCA 126593 30 100.0 34 .............................. AAGAGAATATGAAGGTAGTCAAGAGGGCTCTTTC 126529 30 100.0 38 .............................. CTTGCACTTGCAGAAGCCTTTGCTCACGTGACTTTTTG 126461 30 100.0 37 .............................. TTTCAAGCGCTCTCTTTAGCTGGTTCAACTTCACTAC 126394 30 100.0 37 .............................. AGGAACTTTGCCTTATAAGCAGGCATGAAACCCTTAG 126327 30 100.0 38 .............................. CTCTTCAAACTCATGTTTGTAAAGTGCTGCACCATTCG 126259 30 96.7 36 ...T.......................... TCAAAGACAGTCATGGCTTTTTCACCTCATGCTCAA 126193 30 96.7 37 ...T.......................... ACGGTGGTGGGCAAGATGGACGGTATAGAGTTTTTAG 126126 30 96.7 37 ...T.......................... GGCTACAAAATCGAAATCTACGTTATGGACTTAATAA 126059 30 90.0 0 ...T.......................G.T | ========== ====== ====== ====== ============================== ========================================= ================== 16 30 98.8 37 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : GAGTACTATTACGTTGACTGAATAATTTTCGCTTCTCGTTATCTTTATTGTTTTTGTAGTTTTCGGCTCTTTGCAGTCTTCTTTTCTGGAATACTGTCCTGAGAGTTCCTTGGAAGTTTTTAGTAATAATTTGTTATTAAATTACATTATGTTGCAAATTTTTGTTAAAATTGTAACGTTTTGAATGTGCACATTTGGATTTGAGATTTTTGAGAGCTTCTTGGTATGCGCTCCTCATGGAAACTTGATCATTTTAAAATTAAAAGCCAAAGAAGTTAGATTTTTGGAATTAAAGGATTTTTTGAACGTTGGAAGTGTCTTGCACATTATTGTGCAGCAAAGAATTGGATCCAACGGTGGAACCTATTCACCAAGAGAAATCATGAAAATTTCTAAATTCCGGGCTTGCTTTGGCTTTGTTATTAACCCCTCAGCAAAAAACTTTTATAATTCAAGCGTTTTTATAGTCTCATTGGGGAAATAGAGCAAAATTGCGCCCT # Right flank : TCTCTTTTTCTACAATCTTAACTTAATAATGAGCCTCTAGAGAGTTAACTGCTCAGTACTCTCTTATGATGTGATTAATCAATTAAATAATTCAACAATTACAGAATTAAACATCTGCATAAGACAATGTTTATATTTTTAAAATGGCACTCCATTTGGGATGAAAAATGCTGCCTACTGGAAAAGTTCCACCAGAGAAGCTTAAAGAGATAGTTTTCAAACACCTAGGCGTTCAGGGGGAGAGGGTATTAATTAAGTCCGGTGTTGGGGTTGATGCAGCTGCTGTAGAATTTGGCGATGAAGTCCTCGTAGCATCCACAGACCCAATAACCGGTGCAGAGAAGCACATAGGATTTTATGCGGTCAATGTGAACGCTAATGACGTTGCAACTTTTGGGGCAAAGCCGAAGTGGTTCTTAGTCTCAGTTCTTTTGCCAGAAAATGCTGATGAAACTCTCTTAGAAGATATAATGGCGGATATTGATAAAAGTGCAAAAGAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 50534-49170 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUI01000005.1 Thermococcus sp. LS2 NODE_5_length_178884_cov_111.649748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50533 30 100.0 36 .............................. AGAAAAGATAAAGTCCTCAAAGAAGCTGGGAAGGAA 50467 30 100.0 38 .............................. CCCTTCCATTTGTTGGAATAAGCTCGCGGAGCGTGCCA 50399 30 100.0 37 .............................. GTTCCCCTTCAGCCTGTAAAAACCCTAGATGCCTAGC 50332 30 100.0 37 .............................. CGGATTGCCCAAACATCGTTAATTGGATCAACACGGC 50265 30 100.0 36 .............................. TGAGTGCCTACGGAAACTCAACCAAAGAAGCCGTTG 50199 30 100.0 36 .............................. ATTGACATCAAGGCTTACGTGCAAGACGGCACGATA 50133 30 100.0 37 .............................. TAAGACGCTCCTTAATATCCTCGAAAGTCTTAACCGC 50066 30 100.0 36 .............................. ACAAGTTGGATAGGTTTGAGGACGAGACAGCATGCA 50000 30 100.0 37 .............................. ACAATTGCCCCAAAAGTTGATGTTCTCAGAGGTTTTG 49933 30 100.0 37 .............................. GCCCAAAAGAGTGCCCCTGATACTGTCCCCTCATCGT 49866 30 100.0 37 .............................. ATATAGTTTTTCGGATAGCCCGCTTTAGGGCTATCCG 49799 30 100.0 35 .............................. TAGGCTTAACAACAGGTGGTTTTATAACATGGGGT 49734 30 100.0 38 .............................. CATCATCTTTGGAACACCTCTGTTTGTTCCATTTCTGG 49666 30 100.0 38 .............................. TAGTCTGATTGCTGAAAACGCTCCAGTAGAACAACTAA 49598 30 100.0 36 .............................. CCTCACAATAATTCATACAACCTCTTCAGTATCCAA 49532 30 100.0 36 .............................. AAGAGACTATACGAATTAGCCGAGCCAGTGGTTGAA 49466 30 100.0 36 .............................. TTCACTTTTTCACACCTCCAAAAAAGAAAAAGAAAA 49400 30 100.0 37 .............................. ACTGTAGATATTGGGTTTTCTGGTTCTCTAACCTCAT 49333 30 100.0 38 .............................. GGTTATAATCAACGTCTTTAAATAGTTCTAATAGTGTG 49265 30 90.0 36 ..............C..AG........... CCAAGAAGCATGAGGTGTGGGAACTTGCCGGGGAAG 49199 30 93.3 0 ....A............A............ | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.2 37 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : CACTCCATTTAATCTTTTTGAAAATTTTTCGATCCTTGCTGACGTTCTAGTTTTTGAAATTTTTGGGTTCTAATATGGTTTGATGTCAAAATGGAGGCTTGAGAACGTGTTGGAAGGCTTTAGTAATTGATTGTTATTAAATTACATTGTGTTACAAGTTTTTGGCAATTTTATAACATTTTAAATGTGCACATTTGGAATGGAAGCTTCTTGAGGCTTCTTTAGTGTGTTCTCCTCCTGAAAATTTGACTATTTTGGATTTAAAAACTTTGTTAGTTAGATTTTTGTATTTTAACACCTAAAAAGCCGTTGGAGAGGTTTTGAACATTGCTGAACATCCTTAAAAATATGGAAAAATAACCGTGAATTAATTTAATGGAGTGATAATAGTGTATTAACTGGAGGTTTGTTTGGGTTTTGTTATTGACCCTTTGGGGAAAAGCTTTTATAATTCAAGTGTTTTTATAGTTTTATTGGGAAATAGGACAAAATTGCGCCCT # Right flank : ACATTAAGAGAATTGGGATTATTGCTAGGACTCTCCACGTTTTAATAAGGCTCTACTCCCTAGCAAATGCTCACCAAAGTCAATAATCACTTTTGTCCCCTCAACATTTAAAAACACATGAGGTTAGGATATTTTAGGTAAACCTAAATTCTGGGGTGATTGCATGGAAGCAGTGAGGGCAGAGAATGTCAGCATTTACTATGATGGCTACACAGCTGTGGAAAACTTAACTTTTAAACTCGAAGAGGGTGAAACCTTACTTCTCCTAGGCCCAAACGGTGCTGGCAAGACAACACTTCTTAGAACATTAGCTGGATTTCACAGAGAGTATACAGGTGAACTCTTGATATTTGGAAAGCATCCGCTGGAAGCTAAAGATCTCATATCCTATGTCCCTCAAAGCCATTATCTGAATGAAAGAGTTCCCTTAACAGCTCTTGAAGTCGTTGCAATGGGAGGAATCTACAAGAGAAGTTTTGTCCACTTCAAAATCCCAAAGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 61435-62406 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUI01000001.1 Thermococcus sp. LS2 NODE_1_length_506361_cov_143.937055, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 61435 30 100.0 36 .............................. TACATTTTTTATTTCATCGAGTACAAGGGCAGGAAG 61501 30 100.0 38 .............................. ACTGTTGACGAATCTCTGGACTTTGGCTTCCCTCTTGA 61569 30 100.0 37 .............................. CACTTCTGTTGATACTCGACAAGTGCTGTGAATTGTA 61636 30 100.0 38 .............................. ATAGGACAATATAGGACAATACCCTTTGGACTCCCCGG 61704 30 100.0 37 .............................. CAAGAAATACGAGGAACGCATTAAGGAGCTTGAGAAT 61771 30 100.0 36 .............................. ATGTTGGATGGCGACCCTTATTGGGCTGGGTATGCT 61837 30 100.0 38 .............................. GTTGCTACCTCGATCCAGAAACCTTTGTAAAAGAAGCC 61905 30 100.0 37 .............................. GAGATTAAGGAATTCATCAAGAAGTACTTGGCACCCA 61972 30 100.0 38 .............................. GCTATAACAAGGTTTGCAGGATTCTCAAACGGTTCTAT 62040 30 100.0 37 .............................. AAGCTTCAGCCTTGCTCTTGCTTGAGAAAGTCTGATG 62107 30 100.0 37 .............................. ATCATCAGGATCCCTCTCGTCCCGGAGCGCAAGAATC 62174 30 100.0 38 .............................. CGTTGTTCTCAAGCTTGACTCTTGATGCAACAGCCCCA 62242 30 100.0 37 .............................. TCAACCCATCACCTCCAAAATCTTTGATGCTGGGATG 62309 30 100.0 38 .............................. CCGCACCCGCTAAAGTTGCCACTCCCTTTTTCCATGCC 62377 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 37 GTTTCAATAAGACTCTAAGAGAATTGAAAG # Left flank : TCTTTCTTAATTTTGTCGAAGGTTTTTCAGTTCTTATTTGTTTTGCTTTTTCTGCAATTTTCAGCTGCAAAAAATCGTTAATTTTAGAATGACGGCTTGTGAGTTCTTTGGAAGTTTTTAGTAATGTTTTGTTAGGAAATTACTTTGTGTTATAAATTTTCCTTGGAATTGTAACGTTTTAAATGCATACATTTGGATTTGAGGTTTTCGAGAGGTTCTTTGGCATGTCTCCCTAATGGAAAGTTGACCATTTCGAGTTTAGAAGAGTTTAAGACCAGATTTTTAAAATTAGAGGTCTAGTTGGGCGTTGGAAGTCTCTTGAACATTTTTGTACACTGGTAAATTAGAGCGAGTTGTGGAATGGATTTGCCATGAAAAAGCAATAATAGCGTCTGAATCTGAGGCTTACTTTGGCTTTGTTACTAACCCTCTGACGAAAGGCTTTTATAATTTTAGTGTGTTTACAGTCTTATTGGAGAAATAGAGCAAAATTGCGCCCA # Right flank : GAAGGATGGGATTGACGAACTGATTTATGCTTTCTTTAACCCCAATAAGAACTAAATTCTCATTTTTGAGTTCTTGATAAAAATTAGAGAAAACCTTAAAGCCTTTCAATGCAGAATCTATGAAATAAAACTAACTGGAGGGATAGCAATGTTTGACGTGGTTGCAATAGGCAACCTCAACTACGACATAATAATGCTCGTTGACCGCTTTCCAGAATTCCACGAAAAGATACCAGCAAGAGATGCCTACTTTGGGCTCGGAGGAGCAGCAGGAAATACAGCAACATGGCTAGCTAATATGGGTCTTAAAGTGGGATTCATAGGAGCTGTAGGAAAAGACGAAATTGGAGAGGCTCATATAAACTTCTTCAAAAAGATTGGTGTTGATGTAAAAGGCATAAAAATCGTTGATGTCCCCTCAGGTGTTGCCGTGGCAATAATAAAAGGCGAAGACAAGAGAATCGTGAAGTATTTAGGAGCCAACGCATACAGAGAGCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 259183-258215 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUI01000001.1 Thermococcus sp. LS2 NODE_1_length_506361_cov_143.937055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 259182 30 100.0 36 .............................. GCTCTCCTGATAAGCCCAAAACCTCTCAAGAGGGTC 259116 30 100.0 36 .............................. ATTGGATCACGAAACGAACTTATGAAAGAATATTAC 259050 30 100.0 38 .............................. CCAAAGCATTGACAAAGTCCTTTCCCAAAAGCTCCAGC 258982 30 100.0 37 .............................. CCTTCGGGCTTGATTGCTATGGGTTGGCCGTTGTAGA 258915 30 100.0 36 .............................. AACGTTCGAGGAGGGTGACTCAATACATCAGGGCTT 258849 30 100.0 37 .............................. GACTATGAAGAAGATGAACAGCCCTGCTAGTGGTGAG 258782 30 100.0 36 .............................. AGCTCGATGATGAGCTTGCGCTGATCGAGAATGCAA 258716 30 100.0 37 .............................. GTCTTCAACCTGTGTGTTTACAAAGACAGCTTTTGCA 258649 30 100.0 38 .............................. CTTTGGCTTGAGATACTTCTTTTCATCATCATACTTTC 258581 30 100.0 37 .............................. TGGATTGCGGATTTTGGCCTCAATAACCCAAACGTGT 258514 30 100.0 37 .............................. AGATGATGTCCTCAAGGTCTGGGAAAAGGTTCTTCAA 258447 30 100.0 38 .............................. TTGGTATAGCTCCACCAATTGCCTCACCGATGTCGTGG 258379 30 100.0 37 .............................. ACGGTGGCGTACCGCTTCCTCATTGACATTCCAGAGT 258312 30 100.0 38 .............................. CACCCAACGGCTCGGGCTTTAGCTCTCGATCTTGAAGC 258244 30 93.3 0 ...............C..........G... | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.6 37 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : AGAGGCAAGGGTGATTCTGAAAATTTTTCGATTCTCGCTTATTTTTCTGTTTTTGCAGTTTTTGACTGTTAAAGTTGGCTAATTTCAAAATAATGATTTGAAAATTCTTTGGAAGTCTTTAGTAATTATTTGTTAGGAAATTACTTTGTGTTACAGATTTTCTCTAAAATTATAACGTTTTAGATGTACACATTTGGATTTGAGGATTTTTAAAGCTTATTTTGTATGCACTCCTTATGGAAATCTGACCATTTTGGGTTTGGAGAGGTTTGAGGTAAGATTTTTGAAATTAAGGGTTTGTTTGGGCGTTGGAAGCTTCTTGAACATTTTTGTGCATTAGTAGATCCGAGGAAGTAATGGGGGTTACTCCATAAGAAAAAATATAAGATCACCTAAATCCGGGACTTGCTTTGGCTTTGTTATTAGTCATTTAGCACAAGGTTTTTATAATTCAAGCGTTTTTATAGTTTCATTAGGGAAATAGAGCAAAATTGCGCCCT # Right flank : TGCAATAACAAAAGCCCAGAATCGTGAACCCAAGAAAAACCTCTGAGCTTGTGGTGGGGCCGCCGGGATTTGAACCCGGGTCCCCGGCTCCCGAAGCCGGAAGGATAGGCCAAGCTACCCCACGGCCCCTCGAGAATGAAGTTTAAGGAAACTGTTATAAACATTTCGCAATGAGATTGAGAAAAAGCAGGAAGGGGTTTCTATGATTTCAATTATAGTGCCAACATACAACGAGCGTGACAACATTGAGGAGCTTGTGAGTAGAATAAGCAAAGCGTTAGAAGGTTATGAGTTTGAAATCATAATCGTTGATGATGATTCTCCAGATAAAACGTGGGAAAAAGCACAAGAATTAGCACAAAAATATCCAGTTAGAGTGATTAGAAGGATAAATGAGAAGGGTCTCTCTTCTGCGGTGATTAGGGGATTTAAAGAGGCTGAAGGCGACATTTTTGTAGTCATGGATGCTGATTTGCAGCATCCTCCAGAGGTAATTCCGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 72091-72929 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUI01000007.1 Thermococcus sp. LS2 NODE_7_length_100530_cov_117.537723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================= ================== 72091 28 100.0 51 ............................ CCTACAGTTCTGTTCAAAACGGCTTCAAGTTGGGCTTTGACTTCCTTGACA 72170 28 100.0 44 ............................ TGAGGTACAGGTGCAGATCCAAATATTGGGTATGAAGCTGCTAA 72242 28 100.0 40 ............................ TGCCCCGTCTTGATTGCGATGTATGGGTAGAACCTCAAGA 72310 28 96.4 42 ..........A................. CCACTCCTCCTGCAGTATCGCATAGACCTTCTTCTTTCCGTC 72380 28 100.0 40 ............................ CTAATAATTAACCCCCCAACCATCTACTGGCGGAATTTCC 72448 28 96.4 45 ..........A................. CTGGTCTCCTGCATCGACGAGGTAGTAGTCAAAGTCCTTCAAAGA 72521 28 96.4 50 ..........A................. CCTTCTTGTAAATTCAATTATTGCTTCTGCGACGACTTTGGGATTCCTGA 72599 28 100.0 46 ............................ CTACATGTTTAGTTGTAGTAGGCTTGAGCCTATGTACTCGATAAAC 72673 28 100.0 45 ............................ CTTTGGGACGGGCTGTTCAAAATCAATCCAACCGTTGCTTTTCTT 72746 28 100.0 55 ............................ GTTCCTTTCTGGGAGGAAATCTCTTATTGTTGTCTCTTGTTCTACTTCTTCTTGA 72829 28 96.4 45 ...................A........ TCTTGACCTTGTCCATTATCTCTGGAACTCTCTTAACGCTGACAA 72902 28 78.6 0 ..................G..G.TCT.C | ========== ====== ====== ====== ============================ ======================================================= ================== 12 28 97.0 46 GTTTAAGAAGGACTTAGTAGTATGGAAA # Left flank : TCATTCAGGCTGGAAGTTCTGTACAACAATATTCACTCTGTATTCTCAAAAGGCTGAAATAAAGGCTGATTTTTGCAGTTTTAAACTTTTAATGCCTTATTTTGGATAATAAACAATTTTCAACGGAACTTAAATTATGGGGATGCTAAAAGAGAGCAACGGTTAATTGGAGATATTTCAAATTCACATTATGAATTTATCTCATACTGTTCTGCTCTTCTCTTGAATGAAGCCGTTTTAACTTCATAATTTGTGGAAGTAAAATTGGGGAATCTATTAGACTTTCTCTACCAGTTTTTTAAGTGTTGAGGTTTGGTTTATCCCCATTAATGTACAACTATCTGGATAGCGTTCTATTTGTGGAATTAAGATAGACAGACAAACATTTTTAACTTCCTACTTTTGAAATACTTTAAATTTTCCAGGCATTTTTAGTCCGAAAGTTTTAAATACCGGTTTTAGAATAGTCCCGATTGATAAATGGAGGGCTTCAAGATATG # Right flank : CCCTGTTGAGGGGTGAAGTACATGCCCCATCCTCTCTTCATAACGCAACACGGTGAGCTGAGAAGGAAAGACAACACCCTGCACTTCGTTGGCGAAACATTGGAGAAGGCAATTCCCCTTGCCCAAGTCTCTGAAATCCACTGCGTTGCAAGGGTAACGTTGACCTCTGGAGCAATTGACTTGCTCTCCGTTGAAGGCATACCCGTTCACTTCTACACAGTTGAAGGACTCTACAAAGGCTCCTTCATCCCAAAAACTGGAGGTAATGGAAAGCTTAAGATTGCCCAAGTCCAGCACTATCTCGACGAGAAAAAGAGGCTCTACATAGCCCAACAAATAGTGCAGGGCATAAAGAACACAATGCTCAAATCCCTGAGAGGTCAGGACACTTCGAGGCTTACGGAGATAGCGGTGGGGGGAGCAACAATTGAAGAAATCCGCGGCATTGAAGCCAAGCTCTGGAGGGAGTACTATCATCTATTCGCACAAACACTGAAGAT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGGACTTAGTAGTATGGAAA # Alternate repeat : GTTTAAGAAGAACTTAGTAGTATGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 76665-75437 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUI01000007.1 Thermococcus sp. LS2 NODE_7_length_100530_cov_117.537723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================== ================== 76664 28 100.0 44 ............................ GGACGGATTATGTAATGGGGCAAATTGCTCCAGGGTTTAACTAT 76592 28 100.0 44 ............................ GGACCACATTGATATGGTGGCAGACATGAGTGCATACAGACCAT 76520 28 100.0 49 ............................ GAACTCCAGAATCATATTTCCTGAGGGCACTTCTTAACTCTCCACAGGA 76443 28 100.0 45 ............................ GTTTTACTTACTCTCATAGAACATCACCGTTATTTGCTATGACTT 76370 28 100.0 43 ............................ GCATATGGAAACCTGAGCCCGACAAGCTCGCCTTCCTCTGTCT 76299 28 100.0 47 ............................ ACTTCTGCTCTAATAATAAGGTTGCTGGCATCCCTTGTGATTACTAG 76224 28 100.0 51 ............................ ATGCGTGGTATTTGGTTCAGTGCTTGAATCTCATCTTTGGTATGTTCTTGA 76145 28 100.0 49 ............................ CAAGGGGTGGAGGTTCAAGGACGGGAGTTTTGCTCCGAGTGTTTGATTT 76068 28 100.0 45 ............................ CCTTGAGGAATTCTTGAGCAAACCAGTAGCACCCGCCATCCTGGT 75995 28 100.0 45 ............................ CACACCCCATAACGGGGCAAAAATCGAAAGCCGCACTAGTCTCGT 75922 28 100.0 50 ............................ CCTCCAAAACCTCTACCACCTTCATACCCAATGGCGTCACTTTAATCTGT 75844 28 100.0 47 ............................ TGAACCAGTAACATCCCCCATCTTGATCTCTACTTGGATCCCATGAT 75769 28 96.4 45 ..........G................. TAACATGACTGCCTTTTGTGTTTCTTTGTTTATGTATCCATAAAA 75696 28 96.4 53 ..........G................. TTTGTCCTAAGACGAAATCGTTTCCGAGCGTTGCTTAAATGAAGAACCCTCTC 75615 28 96.4 46 ..........G................. TGCAATGTAAATTCTATACTTGCGTCTTTCTCCATTTTTTTAATTT 75541 28 96.4 48 ..........G................. GAGCTCAGCGCCGATGGGGACTTCGTACCCTCAAATAATGCTGTCTGT 75465 28 78.6 0 .......G.....CC......G..A.C. | T [75459] ========== ====== ====== ====== ============================ ===================================================== ================== 17 28 97.9 47 GTTTAAGAAGAACTTAGTAGTATGGAAA # Left flank : TTCATTTTCGACAGAAGCTGTGCTCAGAAGTGTTCATGTGAGTTACGGTTTAAGGTTTTTTAGGAGTGCTTTCAGGTGTTAGAGCTGTTTTTAACTGTATTTTTAGTAAATCACGGATTTTAGGGCTTTTGAGTGTGGAGGTAAATTTAACCACCTAAAAATGAAAATAAGCTGAAGTTGGTTCTCCCTTGGGTATGTTCTCAATGGTTTTTTGGCATTTTGGAAAACAAAGGCTTGTGATGCTTTAAATTTGGTAGGAATTTTGGGAATATTTAAACAGGGATTTCTTCACCGTGCTTTTAATTTTCAAGCATTAGCTTTCCTTATTCTGCTGGATGCTAAAGGTATCGAGTTAATTTTAAGAAATTTTAGACAATTCAGCGGATTTTTATTATCCTTGTTCACTATAGTCCAATAAGTTTCAAGCTATTCCCTTTCGAAAGTTTTAAATACAGGTTTCAGAGTAGTCCCGATTGATAAATGGGGAGTTCCAAGATATG # Right flank : TCTTGGATTGTTTAAGAAAAACATTAATTCTGGCTTCAAGGAGAAAATTTTATGAATCCCTAGTAATGCCAAAATAACTGGGTAGGTACTTCATTGGGGGATTAAGATGCTCGGCTTTCTGCTTGTCCTGGCGTCCCTGTTCTCACTCTGGTATGGAATGAACATACAGAATGAAGCCCTCCTGATAGTTGCTGGGATTCTCTTCATCTTCGCCCTGACAGACTATGCCGCAATGATAATTCCAGTAAAGCTCGCACAGGCCGGAGTCTTTGGCATAATAGCATTCTACCTGGACTACTTTGGTTACGCTTACCTCGTCTTCCCCCTCTTCATAATCTTCGGAATAGCAACCCTGTTCAACAGGGAAAAGATAGCATACTGGGCATTCCTAGCCTCAATCCCAATAGCATTCATAAACTCCTACCTTGAACCCCATGCAATTGTTCCAATATGGACGCTCATCGGCTTGATGCTCGGCTTTACAGAGCACGCAATAGTTG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGAACTTAGTAGTATGGAAA # Alternate repeat : GTTTAAGAAGGACTTAGTAGTATGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 88364-87367 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUI01000007.1 Thermococcus sp. LS2 NODE_7_length_100530_cov_117.537723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 88363 29 100.0 42 ............................. ACAAGAATTACAAAGGAGAAGGGAAATTCTACTACACACCAT 88292 29 100.0 43 ............................. CCAAAGACTCATCACTAAATTGGTGGTCTAGCATGATTGTTGA 88220 29 100.0 39 ............................. GTAGAAGTGTGGAGTGGCATTTTCTCTTTCCCAAATCAG 88152 29 100.0 48 ............................. TGTTTTTGAGATATGCAACTGCGCCCTCGAACCCATAGACACTTGCTT 88075 29 100.0 40 ............................. AAATTCCGAGTGATTCTGATCCTATCTTTGCTACCACTAT 88006 29 100.0 50 ............................. CATCAACTGCACACATTGGGGTGTAGCTGCTTATTTTCAGGAGTTCTTGG 87927 29 100.0 54 ............................. TCCGGAGGCTTTTGCAATGGCAGCTCCGAGCTCCCAGGGGAGCTTGTATGGGTT 87844 29 100.0 48 ............................. TGTTAATACAACTCTTTTAAACTCCTCCATTCTTTCATCCCCCCACAA 87767 29 100.0 43 ............................. TTACACTGCGTAGTTGTGGTTTCTTTGCTTTTTCTTCTAAAAG 87695 29 100.0 45 ............................. CTAGTATTGAACAATAGTCCAGCTCGCTGCTTGTGTCGTAAGACA 87621 29 100.0 48 ............................. ACTCAACACCATAAAACTCCTTCAGTGCCTTGACGACCTCTTCCCTCG 87544 29 89.7 44 .............T....A......G... TTTAAGAACTGTTCAGCGAAGTCTTTAATGAGGTCTCCGACTGC 87471 29 79.3 47 ............TT.G.CA.....A.... TTCTGTGAATGAGTTGCTTATTCACATGTCTCTTCTTGACGTCTAAA 87395 29 79.3 0 .............T....GA......GCT | ========== ====== ====== ====== ============================= ====================================================== ================== 14 29 96.3 46 GTTTAAGGAGAACATAGTTGTATGGAAAC # Left flank : TTTTATTTCCGGTGGAACTTATGTCCCAAATTGTGCATTAGAGTTTTGAATTGGTGACAAAAGGGTACTATTTTTGAAAACAAGCTTTAAAAATGCTTGTTTTCAATAGTCGAGGAATTTAAAGACTCAACAATCCAAAAAGTTCTAAAATTCCTTAGATAGCCGCAAAGCTTGAGAGTTTCAGTCCTTTGTTAGATCTCCCGACTTGTCTATCCCGTTTTGGATTTCTAAATGGTTAGATTGGGTTTATTTTTGGTTCATGTTCAGGTGGTTCAAAAACGAATTACAGCAGTGCTTTCCACTGCCACTGTCCTGACACTCCTGAATTGTCTCAATTTAAACCATCAAGCACCGCTTTTTTGAAGTTCGTTTAATTTTGACGAAATTTTGACTTTTTTAGTTCAAAAAACTCCGAAAAATTAACACTCTTCACCATCCAAAAATTTTAAATATTGTTTTTGAAATAACTTGATTAGGCAGAAGAAGCTCGCGAGCGTATG # Right flank : GATTTATGATTAACTGGCTTCAGCCTCATAAGATTTAAATACAAACCGAACTAAGCATTGGAAGATGTTGAGAAAGAAAGTGCTGGTTTTAATCTCCCTAATCCCTCTCGCATACCTTACCGCAGATTTGAGAACTGCAACTGCCTGCACGCTGATAGTTCTTTTCATCTTGTTCTACTGGCACTTTCACGCGAGAATGAGCAGAATACTCCTTGACCTGATGGTAGTTCCTCTCCTACTGATTGAGGAACTTTTGCTCAAGGGCGGGATTGACTTCAAGCTCGTGCTCGTGGCAACTGCAGCTGTTTTTGCCATTCATTTCGTGGGCAAGCCATTTAGAAAAGGCCTCAAGGACATGGAAGACAGACCCTATGACTTGCACTTCAACCTAAAGCAAGTACTGCTGTTTGTCATAGCCTTCACATTAGTTGCACTAGTGCTGGGAATAATAACAAAATAAAGAAAAGCTAAAACTTAACCAAACACCATCCCATTGGCTT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGGAGAACATAGTTGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //