Array 1 61524-55375 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJBT01000184.1 Halomonas sp. MES3-P3E contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61523 28 100.0 33 ............................ CTGGTTGCGGAGCGGCTCAAAGCTGACGCCCTG 61462 28 100.0 32 ............................ ATGCTGCCTAGGTTCATCTGCTCAACAAACGC 61402 28 100.0 32 ............................ AGATCCGCGACATGCGCTCGCCCGCCGCCGAA 61342 28 100.0 32 ............................ TCGTCTAGCAGCTGGTAACCCATAGCCCATAC 61282 28 100.0 32 ............................ TTATTGCCTTTGATGTGGTCGTGACCGGTACC 61222 28 100.0 32 ............................ ACCAGCAGTCAGCGGGGGCTCAGCGTCAACGC 61162 28 100.0 32 ............................ TAGCACGACCCCAGCATCACATGCCGCCAACT 61102 28 100.0 32 ............................ ACAATTAATAAGCAATCGGAATACTCTTTACA 61042 28 100.0 32 ............................ AGGAAGCTTCTTTATATTGGGAGTCGTTAAAC 60982 28 100.0 32 ............................ GTCTGGCTTGGGTTGCTTGCCGTGTAATTGCT 60922 28 100.0 32 ............................ TGCAGCTACACGCCGTATGCCCGCGAAGAGTT 60862 28 100.0 32 ............................ CACTCATTACCTGCGAGATCACCTTGAGGCGT 60802 28 100.0 32 ............................ TGTGCGCGGCGTTGCTGTGTGATGCTTTGCCA 60742 28 100.0 32 ............................ AAAGACTTGGATGAGAACGGCGAACCGCTGGA 60682 28 100.0 32 ............................ GTCCGGCGTTGTTGAGCGTCCCGGCATCTTCC 60622 28 100.0 32 ............................ ATCACGATGCCGCCATCCATACCCGGTACCAT 60562 28 100.0 32 ............................ TCTAGCCCTAGCAGTATTTCAACCCGTGACGT 60502 28 100.0 32 ............................ GACCGTGATTCCGCTGTCAACTCAGGCTGACC 60442 28 100.0 32 ............................ AGACGGCGAGCCTTGCGCAGCACTTCGTAGTG 60382 28 100.0 32 ............................ CGCAAACAACTCTCCGAGCTAAAGCCTGAAGC 60322 28 100.0 32 ............................ TAGCTCCACCGGCTGCGCGTTGATCAACGTCA 60262 28 100.0 32 ............................ ATGATGGTGGGTATCGCGGATGACAACCAGGA 60202 28 100.0 32 ............................ CACACCAGCCTAGCTCCACCGGCTGCGCGTTG 60142 28 100.0 32 ............................ GCATCGCATCTATGTGCGTCGCCGCACCGTGC 60082 28 100.0 32 ............................ CCAAAAAGCGGCCTCTGGCAACCGCACTCGTA 60022 28 100.0 32 ............................ AGACGAAAACGGCTGGCATATTATTCTTTGGA 59962 28 100.0 32 ............................ CATGATTGCCGAATTCGCCTGCCGCTTTATGA 59902 28 100.0 32 ............................ TTCACGCAACAGCGCCTTTAGCTCGTCTTCCT 59842 28 100.0 32 ............................ GCGCCGCACCCAAGCCGGAGGACGTATGACAG 59782 28 100.0 32 ............................ AGCTCGGTCGATTCCTTTTCGGCTACTTCGGT 59722 28 100.0 32 ............................ TCGAGCGCATCTCAATCAGACCATGCCAAGCG 59662 28 100.0 32 ............................ TCTGGCATCCCGCCATCGATCATTGCTTTAAG 59602 28 100.0 32 ............................ CTCTCAAAAATCCGCGCCTCCTCGGCTTCCTC 59542 28 100.0 33 ............................ AAAAGCTAGCATGTGCCGAACCTGCGCCCACAT 59481 28 100.0 32 ............................ ATCCCATGTCGGGCAAAGCCTTGTCTGGGCGG 59421 28 100.0 32 ............................ AGGTACTCGTTAAACGCCTGCACCGTCTCTCT 59361 28 100.0 32 ............................ ATGAACCACGGCATTACTCACTTATACGTAGG 59301 28 100.0 32 ............................ TGTTCGCCATGACTACTTTGGCGGGGTGGCGT 59241 28 100.0 32 ............................ ATAAAGCTCATGAACAACCACCGGAATCTTTT 59181 28 100.0 32 ............................ TTACGCGCTATACCTAGTCGCGTAACTGCAAA 59121 28 100.0 32 ............................ CATACGCAGCTCACCCTCAGCGGGTGATGTGA 59061 28 100.0 32 ............................ AATGAAAAGTCTACTGGGTGGTATTCTCCGCT 59001 28 100.0 32 ............................ ATTCTCTTCTGGATCGCTGTAACTGACGGAAA 58941 28 100.0 32 ............................ AGGAACAAATGCTCTGGATTCACGCATAAAGG 58881 28 100.0 32 ............................ GCCGACGTAGGGGCACATCGAAATAAGCGACT 58821 28 100.0 32 ............................ TTCTGCTACTAATTACGACATGACTGCTATTG 58761 28 100.0 32 ............................ GCAAGACAGCGGCGCGACCAATGAAAAGTCTA 58701 28 100.0 33 ............................ GGCACGAGAGCAATTCCGGGGCGAATGGCTGGA 58640 28 100.0 32 ............................ CCAGCAGTTTGCTGGGACACGCCTCGCGGTCA 58580 28 100.0 32 ............................ TTTCTGATCGATACAAAGAAGTTGGCGAGATC 58520 28 100.0 32 ............................ AATAGCCTGGCTGAGATTGAACAGTTGCTACG 58460 28 100.0 32 ............................ GGCTTCGCCCTCACACCGCCCTGGTTACGGTT 58400 28 100.0 32 ............................ TTCGAGCGCGCTTTTTTAGATCTGTTGGGTGA 58340 28 100.0 32 ............................ ACGCCCCGCCTGCCCTGGTTACGGGCGCGACG 58280 28 100.0 32 ............................ ATCGGTGGCCGCGAACACCGCCGCCGTTTCGG 58220 28 100.0 32 ............................ CAACCCCTACGCAAAAGCCCTCAAGGCCAACG 58160 28 100.0 32 ............................ CGCGACGGTGAAGTCATGGTGCGCATTCTGCG 58100 28 100.0 32 ............................ GTCCCAAATGATGGACCGCCGTGATGCCAACA 58040 28 100.0 32 ............................ AGGAAGAAGCGGCGATCCTTTTCATGCTGCTT 57980 28 100.0 32 ............................ GTGCGCACGCGAAAGTAGCGCTTCTTGGGATC 57920 28 100.0 32 ............................ GCTGGCGTGCTGATGGGCAAAGACCGGGAAGG 57860 28 100.0 32 ............................ TAACGATTCGTTAGAGGTGCTGGATAAGCTGC 57800 28 100.0 32 ............................ GCCCACATCGAGCAGCGCCTGGGCGAACTGCA 57740 28 100.0 32 ............................ ACGATGAAATCTGGATGTCGGCAGGCGACCTG 57680 28 100.0 32 ............................ ATGAAGTAGCGCGCGGGTTTTTGGGCCTGCGA 57620 28 100.0 32 ............................ AAATAGACCTCGTCGACGCCGCCGACCGCCTA 57560 28 100.0 32 ............................ ATCGACACCGGTGCCACGTTCGGCGTTGGCCT 57500 28 100.0 32 ............................ TTCTGGCACGAACGGCGCGCGCACTGCTTGCA 57440 28 100.0 32 ............................ CAGTACTTCAGCAACAAGGACAATAGCACCCG 57380 28 100.0 32 ............................ ATTCCTGTTCCTGCCGCGCGGTGCTGTCATCT 57320 28 100.0 32 ............................ AATGTGGGTAGGAGGTTCGCCTCGCTTCTTTG 57260 28 100.0 32 ............................ AGCCCGCGTATGAGCTGGTCATTGATGAGCTC 57200 28 100.0 32 ............................ ACGCGCAGCACAAAGGTTTGCGCGCTGGCGCC 57140 28 100.0 32 ............................ ATCGACTGGGCGCAAGGCGGGCCGCTAATCGC 57080 28 100.0 32 ............................ GGACGCTAGGTGGCTGCGCAGGTTACGGGCGT 57020 28 100.0 32 ............................ AAGCTAGCTCGCAATCCTGTTAGCTACGAAGC 56960 28 100.0 32 ............................ GGAACTGGAAGCCAGCTTTGCAGATCGCCAAG 56900 28 100.0 32 ............................ AGTAGCTCGGCAGACTCCAAGTGCTCGCTAAG 56840 28 100.0 32 ............................ TCGCTTATGCCGTCAATCTCCCGCATCGCGAA 56780 28 100.0 32 ............................ TGGAGGCCAAGCAGCAATTCAACCGTGCGTTA 56720 28 100.0 32 ............................ ATCTGACCCTGATGCGTCATTCACTACACCCC 56660 28 100.0 32 ............................ TTTCAAGTCGGACATGATGGGCCGCTTGTTGG 56600 28 100.0 32 ............................ AGGTGGCTTTTGCCGGTGCCTACCGTGCCCAT 56540 28 100.0 33 ............................ CGCCGGCATCCCGCGCAAGTTCCTAGGCTCAAC 56479 28 100.0 32 ............................ GAACGAAGCCTTGAAGGCGCTCGGCAAGCTGC 56419 28 100.0 32 ............................ ACTACGTCGTCGGGCAAGCCAGCGGGCGGGAC 56359 28 100.0 32 ............................ ATGTCAGGCGTGACTATCTTGCCTTTGGTGCC 56299 28 100.0 32 ............................ TGGAATCGGCCGCTGTTGGGATTCACGCCCAT 56239 28 100.0 32 ............................ GTTCCAGGCTTCGGCCTTCTCGATGTTGCCCT 56179 28 100.0 32 ............................ CGCCACCACCCCCGCCGCCTGGGAATTCTCCA 56119 28 100.0 32 ............................ GCTAGAAAGCCAGGCCAGTGAGGCGGGCGAGA 56059 28 100.0 32 ............................ TGACGCTATTGGCGTGCCGACCCAGTGGGGTC 55999 28 100.0 32 ............................ CTAACCATTTCAGTGCGTGCCGATGCGAAATT 55939 28 100.0 32 ............................ AAAGCAGCGGCTATCCCCAGCGTCAACACCGA 55879 28 100.0 32 ............................ GACAAGCTGCCGCCCGTATCGCGAATGTAGTC 55819 28 100.0 32 ............................ AAGGGTAAATTCAAATCAACGGCCCCTCCCTC 55759 28 100.0 32 ............................ ACCCGCGCCACCAAGCAGCCGCGCAAATGCCC 55699 28 100.0 32 ............................ CAAGGCGAACCCACATCACCAAGCTGTTCACC 55639 28 100.0 32 ............................ ATTCGTCGCGCAGGGCATCTTGAGTGCTGGCC 55579 28 100.0 32 ............................ ATTCGTCGCGCAGGGCATCTTGAGTGCTGGCC 55519 28 100.0 26 ............................ TGTTCAAGCGCCCAGGCGTAGGCATC 55465 28 89.3 30 C...T............T.......... CGTCAACGAAGCGCAGAAGTATGGGTGAGA TG,T,G,G [55436,55453,55455,55459] 55402 28 75.0 0 ..A........T........T.TT.CT. | ========== ====== ====== ====== ============================ ================================= ================== 103 28 99.7 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGTTTGCAGCAGCTAATGAGAGCGGACTGGCTAACCGGTATGCGCGACCACACCCAGGTGAGCGAAGTGCTTGCGGTACCTGCAAATACTCAGCATATAAACGTGGCGCGTAAGCAATTTAATACGGGCAGTGAAAGCCGGGCCAAACGTTACGCCAAACGGCATGATATTTCAGAAGCAGAGGCGCGGAAGATTTATGCCAAGTTGGCTGAACGACGCATTGAGCTCCCCTTTGTGCAGATCAATAGCCGCTCCACCCAGCAGCGTTTTAGCCTGTTTATTGAACATAGCAAACCGTTGGCTTCTGCAACGGAAGGCACGTTTAGCCATTACGGCCTAAGCCCCAACGCCACGGTGCCCTGGTTTTGACCCTTTTTTCTAGCATGAAAATTGGCCACCAATAATCAACCACTTAGCGGTGTCACTCTGAAAAGGGTGATACCGCTTTTTTCGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGGTATGCTCTA # Right flank : GATTTAAGATGTGTACTGGTAGTATCGCTGTGCGGTGCTTTCGGGGTGCGCTAGCGCTCATGCCAAGCTACAAGTGACGTGCATTGGGCGAGTAAGTGGTTAGGCCTGACTGCTTTCATGCGATTTAGTGCTCGACAGGTTGAAACGTTACCGCTTCATCGAAACTGTACATACACTTTTCTGGAAAAGCGTGCAGCTCGCTATCGGTCTCAATCGCTGCTGCGCGGCGTGCATCTTCGTACGCTTCGCTCATCAGTTCAGGTAATGATGCTTTTAGGCTGGGGTTGTCGTTCAGTAAGCGATTCGTTTTGGCTTGGGCATCAATGATCGTCAACCGCCAGCTACGTGAGCGGCGTTCGGGCTGGTGATCCCATTTCAGCAGGTGCATTAACAGACGAGCCAATTGGCTGACCAGCGCGCGCCGTTCGCTTTTGCCCATGCTCTCAATCTCCTCGGCGAGGTGCTCAAGATCAAGTTGCTCCAGTTTCCCCGCCCGCAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //