Array 1 27935-29115 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADCOT010000067.1 Klebsiella pneumoniae strain KCJ3K496 NODE_67_length_30520_cov_12.693581, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     27935	    29	 100.0	    32	.............................	ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC	
     27996	    29	 100.0	    32	.............................	GAAACTATTTCGGAGCATCTCATTGCTGAGGG	
     28057	    29	 100.0	    32	.............................	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
     28118	    29	  93.1	    32	............CA...............	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
     28179	    29	  89.7	    32	............CA..............C	CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG	
     28240	    29	 100.0	    32	.............................	TTACCAATGGGGAAAAATCTTCATTTGTAAAT	
     28301	    29	  93.1	    25	............CA...............	AACATCAGTGGAAATCCACTGCGGC       	Deletion [28355]
     28355	    29	  89.7	    32	......T.....CA...............	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
     28416	    29	 100.0	    32	.............................	CCGAGATTGATTAAAGCAAAGTAACGGCGGTG	
     28477	    29	  93.1	    32	............CA...............	CAGGTTATACTGGCAAAACGTCGATGGCTCTC	
     28538	    28	  89.7	    32	..........-.CT...............	TAAATCAGCAAATATTGTTGTCTACCGTGTCG	
     28598	    29	  96.6	    32	.............C...............	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
     28659	    29	 100.0	    32	.............................	TTAATGTTTTGTTAATTTATGAGTGTGGTGAT	
     28720	    29	  93.1	    32	............AC...............	AGCAAATCGAAAATCCGGCTGTTTGAAAAATG	C [28725]
     28782	    29	  86.2	    32	............CT.A............C	CATGAGCCTGCGCACTCTGACGCGCACCTGCT	CC [28792]
     28845	    29	  93.1	    32	............CA...............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
     28906	    29	  93.1	    31	............C..A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
     28966	    29	  86.2	    32	...C........CA............T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
     29027	    29	  93.1	    32	............CT...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
     29088	    28	  79.3	     0	........T.A.CA........-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        20	    29	  93.5	    32	GTATTCCCCCCGTGTGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA

# Questionable array : NO	 Score: 5.35
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGTGTGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [7-27] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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