Array 1 3200-3363 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUN01000013.1 Hydrogenispora ethanolica strain LX-B Ga0244694_1013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3200 30 100.0 37 .............................. AAAAAAGCTCAAGCCGTAGGAAAAGAAAGTTTAGAAC 3267 30 100.0 37 .............................. ATTATACCACTATAGTGTCATAGTGTCAACTGATTTA 3334 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 38 GTTTTTAGACTACCTACGAGGGATTGAAAC # Left flank : GATGGAGTTATATAAGGTGGAAAAACATTTGATGGGGGAAGAATCATACAAGCCCTTTGTATCGCAATGGTAAAAGTCGGTACGGAGGTGAATTCAGCTGTTTGTAATCGTGGTTTATGATATTGCTGAAAAACGAGTCGCCAAAGTGCTTAAAAAATCTCGCCAATATTTGTACTGGGTTCAGAATTCGGTCTTTGAAGGCGAGATCTCGGAGGCCAAGTATAAGAAATATGTCACGGAACTAAAGAAAATAATCAATTTAGAAGAAGATTCGGTGATCATCTATAATTTAAGAACCAGCAAATATTCCTCCAGAGAAGTGATCGGCCTTGAGAAAGGAGGACAGAGCAATATTTTGTAGTTGACCCGGAATGATGTAAAAATACCGGGGGGTCGACAACAGCCCCAAATTTCAATCGAGCAGCGAGTTCATTAGAAAGTTGTGTGGAAAAGAGTCCGAACATTTGAGTTTCGGACTTAAAAAAGCCCATTTTGGAAGG # Right flank : CTTGAGACGGATTGACCGAATCCATTATATTTTTTCAAAAAACTTTCCTGCCTCCATGCAGGAGTTTATTTTAAAAGACCTGTTACATATAAACAAATAATCTATTGATTTAATGATACGAACCTGATATAATAGGGTCATCGGATGAAGCCTAGGCAGCCGAGTCTAATCTTATCATTTACTAGGGGGAATGAATTGTGACAAAAGAACAAACCATCCTGTCCAAGCTGGGCCGGACCGAAGAGATGCTGGCCGGACTGGCGGCGCATGCCGAACAACTGGCGCGCCGGGGGATCGACGCCGCTTTCATCACCAAGCTGACCACCGCTCATGGCAACGCCCGCGACGCCCATACCGAACAATTGGCCTTCAAGGCGCGGATGATGGAGAAGACGAACGAGTGCCAGAGGCGCCTCGATGAGATGCTGGATCTTTACTCCGAGGCCCGCAAGCAAGTGAAGATCGAGTTGCCGACCGAAACCTGGCGGGAGTTCGGCATC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGACTACCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 39235-37810 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUN01000016.1 Hydrogenispora ethanolica strain LX-B Ga0244694_1016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39234 32 100.0 33 ................................ CAAAGCAAGCATAACGGCAAAATACTTGAGTGC 39169 32 100.0 35 ................................ ATAATATATTGAATATCAATTTTGGTTCCATCTGG 39102 32 100.0 35 ................................ AATCTTGCTGCTAATGCAATTTCTGCTGCTGTTCC 39035 32 100.0 34 ................................ GTTGCAAAACGGTCGGTTTGTCGAGGCTGGTGAG 38969 32 100.0 34 ................................ ATATCTCTTTTTTATTGTAAATTATTAACAACCT 38903 32 100.0 34 ................................ GCCATTGCTCCGCTTTATTCAGCCAGTTTCGTAT 38837 32 100.0 36 ................................ ATCGAGAATGCGCTGAAACATTTGCAAAAAATCAAG 38769 32 100.0 33 ................................ TTGCATTAAAAAATACAACATACAAGGAAGTTT 38704 32 100.0 35 ................................ TAATATTCTTTTTTTTATTTGCTGTTGACTATGAC 38637 32 100.0 35 ................................ ATAGGAGGACACGATGGTAATTATTAATTATACAA 38570 32 100.0 35 ................................ AAGCTTGACATGCCTGGTTGGGAAAAGGGCCTTGA 38503 32 100.0 34 ................................ AGCTAGTTGAGGTGAAGAGATGACTTACCTGGAA 38437 32 100.0 33 ................................ TTGGATCATCCAGATTTATAGCCGCATCCGTAT 38372 32 100.0 34 ................................ TTTTATCGTAAGGCAATTATATCCATCCTCGCTA 38306 32 100.0 35 ................................ TTTTGTCCGCCTATCATCTGGATTGATAAGCAAAT 38239 32 100.0 32 ................................ TTGTTCTATTGTCTCAAAAGTACATCTATCAC 38175 32 100.0 35 ................................ TTATGTTGGAAACCATGTCGGAGTATACCTTGGGC 38108 32 100.0 35 ................................ AAAATCACAATTATATAAATACATATAAGTTAATG 38041 32 100.0 35 ................................ TTCATCTTGTCCCTCTTCAATTTCAATGATAGAAA 37974 32 100.0 34 ................................ TTAATAATTAATTCTGTCGTCTCTCTAGTTGCTC 37908 32 100.0 35 ................................ AATGTTATCATTTTAGGGTGTTAATAAAATAGAAT 37841 32 93.8 0 ..................A.A........... | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.7 34 GTCGCTCCTTGCACGGGAGCGTGGATTGAAAC # Left flank : GAAGCGTATCCGCCATTTCTAATGAAATAGGGGTGAAGCGGGATGATGGTTTTAGTAACCTATGATGTGAATACGGAGAAGGAAGCGGGTAAGAAACGCTTGCGCAAAGTAGCCAAATTATGTAAAGATTACGGACAAAGGGTGCAAAACTCCGTTTTCGAATGTCTGGTGGACCCGGTTCAATTCGCCAAACTTCGCAAAAGACTGGAAGAGATCATCGATGCTGAAAATGATAGCTTGCGGTATTATTTTTTGGGAGACAATTGGAAATCACGAGTCGAACATGTAGGAGCCAAAGGAACCTACGATCCCGAAGGCGTATTAATGGTGTAGCGCGAACCCCAAGCGAACGTGATTTTCCTAGGAGATTCGCGGAGCTTGATACGACTGGGTTTAGAGCATTTTTTACGGATTTTGGGGCAAAAACCGGATGATTCGAACCCCGGTTCGCGGAATCAAGGATGAAAAGTCAAGCGGGATAAGCTTTTTTAGGCAGTACT # Right flank : TAAGGAATTTAAAGCCGTTTTATAGTGAGGTATGTCGCTCCTTGCAGTTCAAGGAGTGAAGCAATGCTTGCCGCCATGCTGAAGGAATGAAATGGATACTAACGCATCGGCCCCGATAATTGTTTGGTTCCCGGATAGTATAAATATCACATATTTATGATAATTTATGGTAAAATTAGGATAATGGTATACGGATGAAAGGGGGAATCGTTTTGAGTAAAGGCAATTCCTACAATGGCGTGATCATTTTCATCCTTTGCTTTATTGCCGTTTCCGGTATTCTCGCCTGGATCACCCGATGATGTGACCGAAAAAATTCTTCCTCATTATTATAGAAAATGATTGGTTTCATTTGAAAGAGTCCGGCACCGGTTGCGCCGAACTCTTTTTATTTTACCCGCTTGTTTTCCAGGGTCGTACCTCAAACCGGAGGAACATTCCTCAGGCTAATGGTCGATATGACCTCCGGGATCAGGGGGGACGAAAGGCGTCGGGGGCTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 100315-100609 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUN01000021.1 Hydrogenispora ethanolica strain LX-B Ga0244694_1021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 100315 32 100.0 34 ................................ GCGAAGATGTATATTATATTCATAAGGTCAAATA 100381 32 100.0 34 ................................ CGCTGAAGTATACCCAACAAGGAAAAGCGGTTAC 100447 32 100.0 33 ................................ AGTTTCGAAAACTCTTGACCGTTTGATGGCCTG 100512 32 100.0 34 ................................ TCAACTGGGATGTAAACGGTGGTTGAAAGGTCAT 100578 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 34 GTCGCACCTCGCGCAGGTGCGTGGATTGAAAC # Left flank : CCTCTGAAAGGATCATAGCATCCCTTACAAGGATGAAGACCATACCTTACACGGATGGAGGCATACCTTACAAGGAGCGAAAGATCCTCTGAAAGGATCGAGACATCCCTTACAAGGATGGCTTTCATCCTAACAAGGATGAAGAATATCCTAGTTGGACCAAAGACCATACCTTACATGAGGGGGAATCTACTGATATATTAGGTGGGCCGGGATGGGGGACGGAGCGATGGTCCATGAGTTTCGAACTTCGTGGAATGGCGGGGAGCTTCATATCCTACAGTAAAAATCGTTATGGCTGATTCATTCTTCAACGATGAAGCTGTGTTTCGGCCGCTAACCGGAAGCGGACCCGGTTCCATCGGGAGATTCGCGGTTCCCGTTTGGCGCGGGTTTTAGCGAACGGCTCGTCAAATGGGTGGCTTTTTTTGGAAGAAAAAAAGAGGTTCGCGGAAACGCTCGTCGAATCCTTTGAAGACAAAGGGTTCGCAGGATACGCT # Right flank : CCAATGGGAAAAAGGAGTACGGAATTGCGGAGAACGATACTACGGTTCGCATGTTGTATCCTTTTACTATGCGGCGCGGTTGCTTTCGGGGAGCAGGACATGAATGTCAAGACGCTTTTCGATTTGTTCCGGGGTCAGGAAAAAGCGGCGCTCGCTCTATTCGACGACTCTTTTTTGGCCCAAGTGCCGCCGGAGAAAGTCATCGCAATCCTCAATCTTTATCAGCAGCAGCTGGGCCCGTTGGTGAATGTCACCGGCAGGGACGGCCAGTACACGCTGGTATTTGAGAAGGGGACCGCGCCCGCGAGCATCACCTTGAACGGGAACCAAAAAATAATCGGCCTATGGTTCGGCCATTGGGCCTTGAACGAGGACTCCAAGGAAAAAATCATGGCCGAGTTTCAAAAGCTCCCCGGAAAAGTCGCGGTCTGTGTCATGAAGAACAATGAACAAGTGTTGCTGGCGCTGAACGAGAATACTCCGCTGGCGGCCGGGTCGAC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCGCAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45032-45731 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUN01000003.1 Hydrogenispora ethanolica strain LX-B Ga0244694_1003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 45032 32 100.0 38 ................................ GATATGAAAACCTACCTTAATATATACGACACCGGTCT 45102 32 100.0 36 ................................ CAAACGGAGGCGGTCAGCGCCGCCGATGCGCGCGGC 45170 32 100.0 33 ................................ ATCAAGGCCCGGATGCACGGTTTGGGTCGGCGG 45235 32 100.0 33 ................................ CGGGGTAAACCCTTATCATTACTACGTTTTTTT 45300 32 100.0 36 ................................ GGAATGTAATCGTCACATGTTCCCAGGCATACTGGA 45368 32 100.0 35 ................................ TGATACCGCGCATTACTATGATCGCCGGGACGTTT 45435 32 100.0 36 ................................ CATTATGAAGAGCCGGAGGACCTGAAGTCAACCGCC 45503 32 100.0 33 ................................ CAAAGACGCAGCCGAAACATTTAAATTGCTGCA 45568 32 100.0 34 ................................ ACCGAAGCGGTTTGGCAAGATCCTTCCGGTAACA 45634 32 100.0 34 ................................ TGGAGCGGGTCGAACAAGCCGGCGACTACTATTG 45700 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 11 32 100.0 35 GTCGCACCTCACGTAGGTGCGTGGATTGAAAC # Left flank : ATCCTATGAAAGGATCATCGGATCCCTTACAAGGATGAAGACCATCCCTTACACGGATCATGGCATCCCTTACAAGGATCGCAGGATCCTTTGAAAGGATCGAGGCATCCCTTACAAGGATGGCTTTCATCCTAACAAGGATGAAGAATATCCTAGTTGGACGAAAGACCATACCTTACATGAGGGATGATGGACTGATATATTAGAGGGGCCGGGATGGGGGATGGTGTGAGGAACCATTGGTTTCGAACTTCGTGAACAGAAAAGGAGATTCATATTCTACAATGGAAATCTTCATGGCTGATTCATTTGGCATTGCTGAAGCGCGCGTTTCCGCGAACCGGAAGCGGACACGGTTTCTCTAGGAGGTTCGCGGCGCCGGTTCGGCGCGGGTTGGAGCGATCGGAGCTTCAAATTTTACAATTTTTTGGGAAGGAAAAAAGAGGTTCGCGGAAACGGTTGTCGAATCCTTTACGAATAAAGGGCTTGAAGGGGATGCT # Right flank : CCACAACCCCGCAATACACCTCGCATAAGCGGGATTGAGCAATTCGCGGGTTTACTTCCGCGTTTTTTTATTTTGCTTGACTAAATTGCTTTTTGAAAGGATGTTTTCTCATGCCCATCTACGAAGCCTGCGTCGGGGATCTGGAACAGGCGAAGCGGGCGGCGGCCCCGGGGGCGGACCGTATCGAGTTATGCACCGTTCTGGCGGAGGGCGGAATCACGCCTTCGCCCGGCGTCATTGTTTTGGCAAAACGGGTCGTGAAGATTCCGATTCATGTGATCATCCGGCCCCGATGGCTTTAGAGATATCGAAGGAGAAATGAGATGGCTCACAGAAACCCCGATTGGGCTTTTTTGATCTTCATTGCCGCAGCACTTTTGGTTATTGCTTTTTATGCACTGAAAATCAATCAACGGGTTACGATACGTTGTCTCTTATCATTGGAGGGATTTGATTCGTACCACCACTTTTGGTATTATTTTCGGCAGGCAATCAGGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8360-10222 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUN01000061.1 Hydrogenispora ethanolica strain LX-B Ga0244694_1061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 8360 28 100.0 38 ............................ CACTGATTTTCAATTTTGAAAACGGAACGATAACAATG 8426 28 100.0 36 ............................ CCAGGAGCCATATCGGCCGCAAATTGTGCTTCTTCG 8490 28 100.0 37 ............................ TCGTCAAAATACCAGGCGCGAGGCTCCCAATATTCTG 8555 28 100.0 37 ............................ ATATAAATATCTCCAGATAACTGAGCTTCCACCATCG 8620 28 100.0 37 ............................ TAATCTAATTCCCATTCTTCAGCATCAGCGGACTTCG 8685 28 100.0 38 ............................ ACCATTGCCAATAATTCTCGCGGAGATTAGAGTAATTG 8751 28 100.0 40 ............................ TAAAAAAAAGCGAAAATGCCGTTACCTTCCAATGTACGGG 8819 28 100.0 38 ............................ TTTTTTGCTTATGCAATCTATATTCTCTATGCCATTCG 8885 28 100.0 36 ............................ CAAGTTTTCCAAGTACCGGCTGGGAGTCCACTTTCG 8949 28 100.0 36 ............................ AGAAGACAAGGTTGGAAACCCGAACAGGCCCGTTCG 9013 28 100.0 39 ............................ TCAAACAATTTTTCTACGTATCCAATACTAATATGTTGG 9080 28 100.0 38 ............................ CTTGTCAAGGAATATCTTTTTAAAATGGGGTGCTTGCG 9146 28 100.0 38 ............................ TTCACCTCTTTTTTAAGATAAACGAATTGAACGATCTG 9212 28 100.0 36 ............................ TATTTGGAACTGCGGTCGAAAAATCCGGTGATGGCG 9276 28 100.0 40 ............................ TCAAGATTCAAAACAATATCCCCGCAATCATCGACTCGGG 9344 28 100.0 37 ............................ TCGGCAATTCCAGTCCACGCAAACTTGATGATCCGCG 9409 28 100.0 38 ............................ AGGGCATTAAAAATGTCTTTGGCGGTTCTGGATTCGCG 9475 28 100.0 36 ............................ AAGTTCCTAACAAGATTGACAGTACGAACGCTAGGT 9539 28 96.4 37 .......T.................... ACATTCCTAACAGGTCGGAAATCGCGCTGGTGGTCGT 9604 28 96.4 40 .......T.................... CGGTTCCGTGGCTGCACTCAACGGCGGACAACTCCAATGT 9672 28 96.4 39 .......T.................... CCAGGCTCCGCTCTTGCGGCGTAAGGTCGGCCGCTTTGT 9739 28 96.4 39 .......T.................... TGTTTGCCAGCTTCCCAGCACTTCAACTGACCTTCGGGT 9806 28 96.4 40 .......T.................... AATAATGGTTGGACGGCAAGTGCGGAAAGATATTGGGCGT 9874 28 96.4 38 .......T.................... TCAGAACTGCATCGTCGTTCGAACAAGGGCGGCCAGGT 9940 28 96.4 40 .......T.................... ATGATGTTGCTGAAATCTGAGACGATCTCACGTCCGGCGT 10008 28 96.4 39 .......T.................... CCGTCGAGCAGGTAAAGGCGGTCCTGCAACGAAAAATGT 10075 28 96.4 39 ......T..................... TTTATCTTATTTTAATTATCACGTCGTGGGATTTTAAGT 10142 28 96.4 23 ......T..................... CTCGCCATTTAAGGCATCGCGAT Deletion [10193] 10193 28 78.6 0 .....A.A.T...T...T.G........ | C,C [10196,10209] ========== ====== ====== ====== ============================ ======================================== ================== 29 28 98.0 38 TTTTAGACTACCTATGAGGAATTGAAAC # Left flank : AACGCCCGCGACGCGCATGCCGAGCGTTTGGCCTTTAAGGCGCGGATGATGGAGAAGACCGTCGAGCGCCAGCAGTATCTCGACGCAATGCAAGCCCTGTACTCGGTGGCCCGTAAGCAGGTGAAGATCGAATTGCCGCCCGAGACCTGGCGGGAATTTGGTATCGTTGATCAGCGGTAAAGACAAGATATGAGATTATTTTGAAATATGTATGGGTACGGAAGAGGTAGGCGCGGCGAGTCAAGCCCGCCTACCGCGAAGCATACATATAAACTACCTCTACAATAAACATAATGACCTGGTATAATAGAGTCAATGGCTCAAAAGTTTCGTGCCATGCGAGATCATCTTTGTTTTGTCGTCGACCCGGAGTGATGTAAAAAAGCCGGGGGGTCGACGACAAATCAAAACCGGAATGGAGCATGCGGTTCAATAGAAAGTTGTGACGGAGAAGCCCGAAGGTTGATGGTCCGGGTTTAAAAAAGTCCATTTGGGAAGGG # Right flank : CGCCGGGAATAAGAAAAAAGACTGATTGCTCAGTCTCGGATCGCGGGGGAAGGGACTTTCAAAGCCATGGTAAAGCCTTTTGAAACGGAAATCGCTTGATAAAGGTCGAAAAACGACTTTACCCTTGCTTCGCTGCGTTTTTGTAACCACCTTTTATCAGAACGCTGTTAGAACTTGACCGTGCGGGAGGCGCCTTTCATGTCCATGAAGGTGGCTTCGGCGTCCTCGATATAAAACGTTTCAAAGATTGAGTCGTCGGCGCTGTACATTTTTTTGAGCGTCGGCATGGCGTTCAGCGCGGCCTCTTTGGACTCCCGGCTGGTCTTGAAGACGGCCTTGCCCTTGAGGCGCAGCCATTCGCCGGTCTTGGAAGTAGTGCTGATCTCCAGGCGGGGATTGGCTCGGAGCTGCTTGTAGACATCCTTTTGATTGTTGGTCGCCAGATACAGCTTACCTTCCCATTCCATCGCGAAGCCGAAGGGACGCACTTTGGGAACGCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGACTACCTATGAGGAATTGAAAC # Alternate repeat : TTTTAGATTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 13590-14145 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUN01000061.1 Hydrogenispora ethanolica strain LX-B Ga0244694_1061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13590 30 100.0 36 .............................. TCATGGTACGGCGAATTTGTTTGATGAGTTCTCAAA 13656 30 100.0 38 .............................. TGCAATGGTTGGTTGCATCGGCTCCCGGAAAGGAAGCA 13724 30 100.0 37 .............................. TTGCAAATTGGACAAATGTCAATTGGTGTTTTCTCGA 13791 30 100.0 35 .............................. TCTGGCGACCGATACGGTCCTGGTTCTTGATGACG 13856 30 100.0 35 .............................. AGCAGGTTACAATTGCCATGAGTATCCCTCCCTTC 13921 30 100.0 36 .............................. TGACTTTTATACCAGCAAACTGATCTTCCCGGCTGC 13987 30 100.0 35 .............................. CAATATAGTGTCCAACGGGCCGACGTGATGGAGAT 14052 29 96.7 35 .......................-...... TCGAATGGTGCAACAAAAAGTATGGTGGTGAAGTG 14116 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.3 36 GTTTTTAGACTACCTATGAGGAATTGAAAC # Left flank : AATCCGCGTGGTGGAAAAAGCTCATGAAATTGTAGTCCAGCCCGAAAAGGAAAATATCCCTTCTTGCAAGGCGCTATTAGCCAACAACTATGTCTATGATGAGGAAAAAGGTTATTACTCGAAAGTATTGATCCATTCGGTAGGCTGATGTAGTGTTACGCTTTGATGGCAATTGAGATGCATTTTAATCGGTGCATATCCAGCGATTCCTGAGTGGAACGGCGGTATCCTATACTTTTGGTCGAACCTGATCGATTTTCGATACCATGGCAGGGGTCATGCCACTCAATCGCAATATGACCCGGGATATGGTCGAGATCGTGGCGGGAAGTTGGGAACGTGGAAGATCTCTATTTTGTTGTCGACCCGGAAGTGATGTAAAAATGCCGGGGGGTCGACAACAAGTTAAAATCTGATGGAGAATGGGGTTCAATAGAAAGTTATGATGGGAAAGTCCGAAGATTTGACGGTTCGGGCTTAAAAAAGTCCATTTGGGAAGG # Right flank : CTGGATCAGAACCTGTCGGATCAATGATTCTTGTTATGACAAATTCAAACATTTTTTGAAGGTTTTTTATGTATGATAGCGAAAAAGATATGGCAAATGATTTGGAAGATATTTTTATTGTCGGGAAATTGCGGTAAATCAAACTTAAAATTGGCTTTTTCATGGACGGAACATTTTAAATGGGTTTTGGCAATTCGTGATCGAAAGATAGGTTATTCAAAGGAGCAGAAATTGCGTTTAAAGATCAGCTTTAATTCCGATGCCCCCATCGACCTTCCGGTTCAATACAATCATTGGTTGCAAGCCACATTGTATGCGTCCTTGGATCCGGAGTTCGGCGCTTTTCTGCATGACCGGGGGTTTGACGGCGGGGGCCGTGTTTTCAAGCTTTTTACTTTCTCACGGCTCTTTGGGACTTTTCGGATTAATGGACCGCAAATAAGTTTCACGCCGCCGTTACAGTTGATCGTCGCGTCGCCGGTGGAGCGGTTTTGCCAGTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGACTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 14400-8671 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLUN01000058.1 Hydrogenispora ethanolica strain LX-B Ga0244694_1058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 14399 33 97.0 34 ................................G AAACTCAGGATAATGATTTCCCTCAACCATAATA 14332 33 100.0 31 ................................. AATTCCGGTTTTCCTTTTGAAAAAGTAGTAC 14268 33 100.0 32 ................................. ATGTTCCTGAATCTACGGTATTTTTAGTAATA 14203 33 100.0 33 ................................. TCAACTTCTTGATCTGTCGAATGAACATATAAT 14137 33 97.0 33 ................................C CGGATTAATTTTGCCCGATAATTGTCATTGGGA 14071 33 97.0 32 ................................T TGATTCTGTATATTAGGTAACAATTTACTTAA 14006 33 100.0 35 ................................. TTCGAACGATAACAAAATATTCGAAGGTTATTCAA 13938 33 97.0 33 ................................C GGCTTCGGTCCGCGAAAGACTCGGTTTCTATGG 13872 33 97.0 33 ................................T TGAGGCCCTAAATGAATCTGGCTTATTCTGTAA 13806 33 97.0 34 ................................C AAAAGTAATGCTCATATCAATCACCTCCCTTCGC 13739 33 97.0 33 ................................T GAGATTATCAACCTTAACTCTTGGTATCAAGAC 13673 33 100.0 33 ................................. AGAATCTCCTAGAATCTCCATATCATTAAAACC 13607 33 100.0 33 ................................. AGGCCATTAATGATATCAATAACTTCCGATAAA 13541 33 97.0 33 ................................C CATAGTTTCGAACATTGCTACGCGCTGCAATCG 13475 33 100.0 33 ................................. GCTTTGCCGTGTACCATTGCGACACCCCCAAAA 13409 33 97.0 32 ................................C CAATCGCGGGCTTTTTAGCTGTCTCCGCTTTG 13344 33 97.0 36 ................................T AATAGTTTTAGCGCCACCGGCACGGATACAGGCCAT 13275 33 97.0 33 ................................T GCTTTTGCCTTTTTGGCAGGCGCAGGTTTGGTT 13209 33 100.0 33 ................................. AGTGATACCCGCTCAAATCCACGAACCTTACTC 13143 33 97.0 33 ................................G GACGTCCCGGCAACGGAAAATCGCATCTGGCCG 13077 33 100.0 32 ................................. GGTACCTAAATGGAATATCATACCAAACTTTT 13012 33 97.0 33 ................................T GCTTTTGCCTTTTTGGCAGGCGCAGGTTTGGTT 12946 33 97.0 34 ................................G TCGTATAACTTCGCGATATTCGGTTCCGGCGTAA 12879 33 97.0 32 ................................C ATTGTCCTTTGCGCAATGCATAGCCAACAGGT 12814 33 100.0 33 ................................. TATCCCAATATACCGTTTTAACGTGCTTATAAC 12748 33 97.0 33 ................................T ATTTGTGGGCGCAAATACTCCGCCATCACGAAT 12682 33 97.0 33 ................................T CTCCCGTAATGGTCATGATCATATAAGCTAAAC 12616 33 100.0 34 ................................. AGTTGGGTATTAACCCCATCGAAGCAAGTGTAGT 12549 33 100.0 33 ................................. GTCGAACCAAAGGAATCCGCCTATTATGCTATC 12483 33 97.0 34 ................................C CAATCGCGGGCTTTTTAGCTGTCTCCGCTTTGAC 12416 33 97.0 33 ................................G ATTCACATCCGTTACAACTGGGATGATGTCTAC 12350 33 97.0 35 ................................C TTAGTTATAAACTTAGGGCACTTAGCATTTCTTTT 12282 33 100.0 32 ................................. AATTCAGACTCAGATAAATTTTTTAGAGTTCC 12217 33 100.0 34 ................................. GAAAAAGGAAGATATCTAAAACTCTCTTATACCA 12150 33 97.0 34 ................................T CTTCAAAGCCTTTAAAGCGTCCGAAATAATAGGC 12083 33 97.0 33 ................................T TACTGCCGGATCAAATTTGATGCTGGCGGGCCG 12017 33 97.0 35 ................................T TGGTCTTCGCTGGATATATTATGAAACATTTTGAG 11949 33 97.0 34 ................................T TTGCCCTCAACGCTCGCGGCGCTCTGGTCGCCCG 11882 33 97.0 33 ................................G CTTTTAAACACCAACGAATTTCTTGGGCAGAAA 11816 33 97.0 34 ................................G CATTTGGCAGCCTCCCGTTTAATTCTTTGCATCA 11749 33 97.0 32 ................................G CGGTATCAAAATCAAGCCAAGAGAACATAAGC 11684 33 97.0 34 ................................G TTTCCGGCGTTGTTGTCTCATGGGTTACCTCCTT 11617 33 97.0 34 ................................G AATTCGAAGTCCTCAAATTAATCAAGGCATTAAC 11550 33 97.0 34 ................................C GAAACGGAGGTACTGAAATGAGAGAAAATTTATT 11483 33 100.0 33 ................................. ATGCGTCAAGGTTGACGGAGAAGCAATCAAGGC 11417 33 100.0 33 ................................. GGCGACACTATCGCCGTTAAAGTCGCGTGGATC 11351 33 97.0 33 ................................T GATAGTTTTGAATTTCCTGATTGTTTTTTTCCT 11285 33 97.0 32 ................................C GGCGCTGCCGGAGGCAGTTCGAGCATTAATTG 11220 33 97.0 35 ................................C GGATTATCTATCCCCTTGGAACCCAAGATTGTGAT 11152 33 97.0 33 ................................G TCTTACCCATTGGTAGTTCGCTCATATCAACGC 11086 33 100.0 33 ................................. TGTCGTCACCTCGCCAACCACAAAAGACTGTCC 11020 33 100.0 35 ................................. GGGCGATGATGGCCCCTTTCGCCTGGTCCACGGTG 10952 33 100.0 34 ................................. AGGACCCAACGGCCAACCGGCCTTTCCCTGGGCC 10885 33 97.0 36 ................................C TGTATCTGCGGGGTTTAGTATCCAAGACCGGCGCGA 10816 33 97.0 33 ................................C AAGGCGGCTGAAATGATATTTCAGGTATAAACC 10750 33 100.0 33 ................................. TGAGCCGGGTGGTTACCGTATTAGCCCCTGAAG 10684 33 100.0 32 ................................. TTTCCTCCCCGGTTATTGTTGTTCGTTCGAAC 10619 33 100.0 33 ................................. AAAGCTGGGAGTTTCGACATCGGCGGGCGGCTC 10553 33 100.0 34 ................................. ATATAATGCCAGAAACGGCAAATATGGCGAGATC 10486 33 100.0 32 ................................. GCATCAGTACTCGAATAAAACCAGACGGGCGG 10421 33 97.0 34 ................................C TAGAGGCAATAACAATTACGGATCTGATTACGAC 10354 33 97.0 32 ................................C AACAATCCCGCCAAAAATCATCATCCTCAGCG 10289 33 100.0 34 ................................. CTGTTGTAGCGCCATCCGCGCCGCCAGTGTTATC 10222 33 97.0 36 ................................T CGGCCACCGAGAAACCCCTTCCGGAAAAGCCGAAGG 10153 33 97.0 33 ................................T ATGAACTACTATAACGATAACGACCCCAAAATC 10087 33 100.0 35 ................................. TTTCTATTAATTAATCTTTTGGCCGGGCTAATTAC 10019 33 97.0 32 ................................C TCGCGCTCGATGTCGCGTTGGGTCTGTTCGGC 9954 33 100.0 32 ................................. TCATCCCTATGTATTGGTCACGGAGGGATTGA 9889 33 97.0 33 ................................T TTTTTGGCGGAAAAATTAGATGGTAGAGCCCTC 9823 33 97.0 32 ................................G CCATTGTTTGTGAAGTGGATATCGACGAGAAT 9758 33 97.0 32 ................................C CGGTTTTTGCCGATATCGATAGCCGGGCAAAA 9693 33 97.0 33 ................................C TCCTTTACGTTATTGACTGATTGGGATTACCGG 9627 33 100.0 35 ................................. CCTCTTCGATGCTCTGGGAAAACTGGAGCGCGGTC 9559 33 97.0 32 ................................T AAGAAGGGCGGTTATAACGTGCAGATCGAGGC 9494 33 100.0 34 ................................. CAAGCCGGTGCAGGCATTTGTTGAACCGTTCCCA 9427 33 97.0 32 ................................C CACCGGAGTCTGCACATAAGCCGGGGCCGGGC 9362 33 97.0 32 ................................C GATAAAGGACGGTCCTGAAGTGACTTTCCTTG 9297 33 97.0 33 .............C................... TGATGGGCGACATAAGTCATCAGCTTACTCAGG 9231 33 97.0 34 .............C................... GAGCGGTAATAATCCCCTGGCCGTTAAGATACGC 9164 33 93.9 32 .............C..................C GGTCCGATCAGGTCGTTATACAAATCATGATT 9099 33 93.9 35 .............C..................G TGAAAGAGTCTTTATTGTGGCCAACACCCCAGGCG 9031 33 93.9 34 .............C..................C GGTTGATGGTTTTGGCGAAAACCGGCATCTGCTC 8964 33 93.9 33 .............C..................C CGTATATCGTGGCCCAGAAGCTTGATGAGGAAA 8898 33 97.0 33 .............C................... GGAAGGGTTCGACAGGTTCGAACTCGCTTTGGC 8832 33 93.9 32 .............C..................T ACTTGATCAATGTCCGCTTTTGTGGCATCTTC 8767 33 100.0 31 ................................. GTTCGTCGGGATTGATATCCCTGCCGATTTT 8703 33 90.9 0 ..........A......C..............G | ========== ====== ====== ====== ================================= ==================================== ================== 87 33 97.8 33 GTCGCACCTCGCGTAGGTGCGTGGATTGAAACA # Left flank : TGCAACCCATGACCCAATACCTGGATTGTCTGATCACGGAGCGGGTGGCCGAATTCAGCGGCAAAGTCCTGCCGAACGACCCGCAGCTCCAAAAGAACCGCGCCGAGATGGGTAAGTTTCTGAAACTCCTCGAAAACCTGTTGCCCCAGCCAGACAGCGCGGTGATCCTCGCCGCCATCAATGAAACCGCCTGCGTCATGGCGACCCGCTGCCAGGAGCTGGTCTACCGCCGGGGCCTGGAAGACGGCGCCGAATTGGCCGGCATCCTGGCCCGAAACGGCCGCGAGCGGAGTGAAAGCTGATTCACTCTCGGGGATGGAGGTTCCGCTGCGGCCGCGAACCGGAAGCGAACATGGTTTCCCCGGGAGCTTCGCGGTGCCCGTTTGGCGCGGGTTGAAGCGATCGGAACGTCGAATCGGAGGATTTTTTTGGAAGAAAAAAAGAGGTTCGCGGAAACGGTTGTCGAATCCTTTGTGGGGAAAGGGTTTGAAAGGTAGGCT # Right flank : AAAGGGAGTGGCTCCATGCTGATGTTAGCCATGTCGCACAACCAATAAGTTGGTATTCGACCGAAACTATCTATAGGAATATATCCGCAATGGATGTTATGGTAATTATGGGACTGCTTTTCACAATTGTAATTAAAGAGAGGTTATCAATGAAAGAAAATCTCGTTAGCCGCACAGCACTAATGGCGGCCTATTTACGGAGTTTTCATTCAATCCATGACACGCCTAAGATATTTGATGACTTTTTGGCTCATCAATTACTCACGGCAGAGGAACATAAATCCTTTCAAGATTATTATCTATTTTTGCTAAAAAAAATTAATAACGAATTATCATCCAATGGTCAGGTAATTTCCCTAGCAAAAATGATGCAAGCCATGACTGCTTCATCCCTCATTTTGAGTCGTTCAAGGTATACAGAAGATACTCTAGAAAAGGCCGTTCAATATGGAGTAAAACAGTATGTAATTCTTGGAGCGGGGATGGATACCTTCGCTTTC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCGTAGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //