Array 1 1958753-1957564 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE702599.1 Escherichia coli UMEA 3805-1 acXuM-supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1958752 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 1958690 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 1958629 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 1958568 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGATTAATGCT 1958507 29 100.0 32 ............................. TTTTCCACCAGTCGCAGTGGGAGCAAAAACTG 1958446 29 100.0 32 ............................. CGCTGCTGTTCAGCGGCAATCAGATCAGAACC 1958385 29 100.0 32 ............................. GGAATCCACCGCGTCGGCTATGGCCTGATAGT 1958324 29 100.0 32 ............................. ATTAATAGTTTTTTCATTTGTTGCCCTTTAGA 1958263 29 100.0 32 ............................. CCGGTGATTGCCTGCCCGTCGTGATACTGCGA 1958202 29 100.0 32 ............................. ACCGCCTATTACAACGAAATCGATCCATTCGC 1958141 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 1958080 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 1958019 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1957958 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1957897 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1957836 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1957775 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1957714 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1957653 29 96.6 32 ....................A........ CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1957592 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAAGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1986596-1985713 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE702599.1 Escherichia coli UMEA 3805-1 acXuM-supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1986595 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 1986534 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 1986473 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 1986412 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAATCC 1986351 29 100.0 32 ............................. ACGAAACGCAGGGGCGCGCTAAAACGTGATTA 1986290 29 96.6 32 .G........................... ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 1986229 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 1986168 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 1986107 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 1986046 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1985985 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1985924 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1985863 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1985802 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1985741 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //