Array 1 1036-397 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHU010000017.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
1035 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT
974 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC
913 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA
852 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG
791 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC
730 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC
669 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
608 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
547 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
486 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
425 29 96.6 0 ............................A |
========== ====== ====== ====== ============================= ================================ ==================
11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGG
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 8891-10079 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHU010000053.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
8891 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA
8952 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC
9014 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA
9075 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG
9136 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC
9197 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA
9258 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG
9319 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA
9380 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA
9441 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG
9502 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA
9563 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG
9624 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC
9685 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
9746 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
9807 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA
9868 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA
9929 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA
9990 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA
10051 28 72.4 0 .AA........C..T....A..-.C...C | T [10070]
========== ====== ====== ====== ============================= ================================= ==================
20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//