Array 1 2267475-2265852 **** Predicted by CRISPRDetect 2.4 *** >NC_013198.1 Lacticaseibacillus rhamnosus GG, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2267474 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 2267408 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 2267342 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 2267276 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 2267210 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 2267144 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 2267078 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 2267012 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 2266946 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 2266880 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 2266814 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 2266748 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 2266682 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 2266616 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 2266550 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 2266484 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 2266418 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 2266352 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 2266286 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 2266220 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 2266154 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 2266088 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 2266022 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 2265956 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 2265890 36 83.3 0 .......................AA.A....G..AA | T,CA [2265855,2265861] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //