Array 1 119760-117941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMH010000001.1 Holdemanella biformis strain MSK.13.45 NODE_1_length_175124_cov_312.682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 119759 36 100.0 30 .................................... GCAGAGTACTTTGACAAACTTTTCTCATCT 119693 36 100.0 30 .................................... TTCAAATAATGATTAACAGGATTGAATAGA 119627 36 100.0 30 .................................... ATAACACCTCTCTAAAACAAACATAAACGA 119561 36 100.0 30 .................................... GTTTTCGGTTTATACTGGCGGAGACGGCGG 119495 36 100.0 30 .................................... TTTTAGACACAATAAAAAGACGCAAAAATC 119429 36 100.0 30 .................................... TTTTCGGATTATTCCGTCTCCGCCGACGGA 119363 36 100.0 30 .................................... GAAATGGTTAGGTCAAGGAAAAATAGGAGA 119297 36 100.0 30 .................................... ATTCATAATCAAGCACAAGAGATTAATAGA 119231 36 100.0 30 .................................... GGGCTAGTAAAGCTACAAAGGAACAGATTT 119165 36 100.0 31 .................................... CTTATGCACGTAAGTATACAATTACTACCGC 119098 36 100.0 30 .................................... GATGGTGTTGATTATTTTTACCCAACATTT 119032 36 100.0 30 .................................... ATATGCACCGTTTCCTTTAAATGATATGAG 118966 36 100.0 30 .................................... AATATTCTGTTAGCACAAATAGTTCATCAT 118900 36 100.0 30 .................................... TTTAGAGTTGGCAATGTTATAAATGATTGT 118834 36 100.0 30 .................................... AAAATCAAATGTTCGTGAATGAGCAGTTAA 118768 36 100.0 30 .................................... CAGGACTAAAAAATATGGTATCATTTGTGT 118702 36 100.0 30 .................................... GTGCCTTCCAGCATTTCTTTTTTATGTTGT 118636 36 100.0 30 .................................... GATGGTGCATGCTTACAGTTCGGCTGGTCA 118570 36 100.0 30 .................................... CTAAAGTTTGGTACAACGATAACGGCGTTA 118504 36 100.0 30 .................................... ATTTAAACTTAACATTTGCAAATATGTATA 118438 36 100.0 30 .................................... CAGTGACGCGCAGTAAGGCTTACGAATATT 118372 36 100.0 30 .................................... AAAGAGTCAGAGAATGGCTAAACCAACCTT 118306 36 100.0 30 .................................... ATCTAAAGAAAGAGGGAAAATTACATGGCA 118240 36 100.0 30 .................................... TTAAAGGTCAACACGTATACTACGACAATT 118174 36 100.0 30 .................................... TTAAGACGGTACAAAACAGACCTAAAGAAA 118108 36 100.0 30 .................................... ATTTGGTGGAAATACTCAATTTACCGCTCA 118042 36 100.0 30 .................................... ACTAGTAGTAGATTCTTATTACAATGAACT 117976 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 100.0 30 GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Left flank : AAGCAATTGATAAAAATGTTGTCACCATATTATGAAGACGAATTACAAAAAGATGAATTTGATCTAACGAGAGATGAATTGATTTTGTTTCAATTGGATTTAGTTGAATATATATCCAATCATAATTCAAAATATGATAATATCTTTGTTTTCGGCAAACTAGATAATTTAAGTGATAAAATTCTTCAGAAAATCAATAAAATTGAGAATGTTATATTGATGATTTTTACAAATTATTACAACGATTTAATGAATGTACAAAATACAGCTTTATTGCAAGATAAAATAATAGATTTAGCAGACATGGAACAAATTTATTACGACCTATCACAAAAATCACTTCAAACATATACGTTACAGGAGGTAGAACAAATGACAATTGATTATTTACAACAAATATACACTCATAAAACACACGATATTTATCAAGAACTAGATCATTTTTCAATTAAATAATTAGTATTCTATTACATTCAAAAATGTGCTACCATATTTTTGAG # Right flank : TTTTTTATCATTCGTTATCATCTACTTTCCGTTTTGTTACCATAAGGATTTTTATTGAGATGGATTTGAAAAATGAAAAAGGGAGTGTCCTCCCGCCAAAACCGGCAGAGGTGCACTCCCACCTATATTTTATTGTGTAAATGTTAATTAAACAAGGAAGAATATAAATATTTGATTAATTAAAAGGTATGTATTGTGCTTTTTAGAAATACAATACAAATAAATTTAGTTCATTTTGTTACTGTATATTTTTGCTAGAATATCGTTTATTTCTCTTGTTTAATATTAACTACCACATACTCACATATACCCTCTGTTCTTATTGGAAAACCTCAACCAACAAGGCCTGAGCTAATGATTTTTGTGTGGTGCTTGAATGTTTCTTTTCCATAATTACCCGCAAAGTCGGGTTGTAGGTGGTAAGAGAAAGATAGTGGAAACATTTGTCCGTTATGAGTATGATCACTGAGTTGAAGGTCTATGTTGTTTTTAACATTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //