Array 1 156263-161340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKO010000001.1 Halarchaeum rubridurum strain DSM 22443 Ga0451173_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 156263 30 100.0 34 .............................. GCCGACTCACCCAACTGGCGTGTTGTCACGGTTG 156327 30 100.0 36 .............................. ACTCGGTTCGTCGGCACCCACTTGATGCAGTCATTA 156393 30 100.0 34 .............................. CTCTCCTACGGGAACCGAAGCGGCCTCCAGGGTG 156457 30 100.0 38 .............................. CAGAGCTCCGTTAGACTCTGGGGATCATCCGGCTCCTC 156525 30 100.0 36 .............................. CTCACTCGGTCGTCCCTGCGGTCCTCCCGACCTGCG 156591 30 100.0 36 .............................. CACTGGTCGGGCGTCGTCGGCTACCCGAGCATGCGC 156657 30 100.0 36 .............................. GATAATCTCGTCAGCATCGTCCGGGAGGCGGACGAG 156723 30 100.0 36 .............................. CTCCTCCAGCTCGTCGAGCGTCGCCGTCTTGAGTGT 156789 30 100.0 35 .............................. CCGTACATCGGGAGCAAGACGTACCTCGCACCGTG 156854 30 100.0 34 .............................. GAGAGCGCGATCCGCTCCTTGACGGTGTAGCCGT 156918 30 100.0 35 .............................. GGCTTTCTCGACCTTCTTCCGGTGCTCCGGCATCG 156983 30 100.0 37 .............................. ACGAACTGCGCGAGCGCATCAAGGACGGACGCATCGG 157050 30 100.0 36 .............................. GACGACGTCGAGAGCGAGGACGTCGCGGAGGACGTC 157116 30 100.0 37 .............................. CTCTTGCTACGCGGTCTTTTGTGGCGGTAGTTTGATA 157183 30 100.0 36 .............................. ATAGGCTACGGACCTCGGCGTCCGCCGTCTTCGTTC 157249 30 100.0 34 .............................. TCGGAGAGCCGCCACTCGAAGTGGAACCGCTGAC 157313 30 100.0 35 .............................. TCCGTCACGGCCGTCACAGTCGCGTTGAGGCCGGG 157378 30 100.0 35 .............................. CGGGTTGCAGTCAGGTTGTGGAGTGACGCCTCGGT 157443 30 100.0 38 .............................. AGGAACCCGGCAGGGATGATCATGTGGGGGCTGGCGGT 157511 30 100.0 35 .............................. GATCCGGGGCGCGCGAAGAAGCTCTACGCCGGGTG 157576 30 100.0 36 .............................. GACGAAATCGGCGCTGGGGCGGACTCACGGCGTGCA 157642 30 100.0 37 .............................. TTGGTCGGGAGTCTGGCCGCGACGGGCTGGCTACCGC 157709 30 100.0 36 .............................. GTGTATCTCGTTGGTGATGGTGGGTCGGCGGAGGTG 157775 30 100.0 35 .............................. CTCGCGTTCTTGGCGGCTCTCGCGCAGGTTTAGGC 157840 30 100.0 36 .............................. GACCGCGTCGAGCGCGAGGGGACGTGGCTCTCGAAC 157906 30 100.0 33 .............................. AACTTCGAGGAGGATTACGTAGACCAGTGGGGG 157969 30 100.0 36 .............................. CTGCTCGACGTCCTCGTCGAGCGCGTCGAGCGCGTC 158035 30 100.0 35 .............................. TGCTAGCTCTCCCCGTCCCCCTCCTCGGCGCCGAG 158100 30 100.0 35 .............................. GATAAGTACGTATCTGACCAAGAGGTATCGAATCA 158165 30 100.0 36 .............................. AGAACGGACGCGTAGCTGCACGTGCCGCCCGACGTG 158231 30 100.0 36 .............................. TGTCAGTCATGGAGAATCACCCGAGCCACGAAGCGG 158297 30 100.0 36 .............................. GGTCGTGGGACGTCGACGGCGAGACCTGGCACGTCG 158363 30 100.0 35 .............................. GTCGACGGCCGCCAGGCACGCCTCAACGAGCGACG 158428 30 100.0 35 .............................. AACTCGCCCGCCGCGCGCTTCTCGACGAGCGCCGG 158493 30 100.0 35 .............................. TTGCGGTGTGAGTGGTTTGGGACGTCTTGGGTCGA 158558 30 100.0 37 .............................. TCGACGGCTCCGAGCTGCAGGCCGACGGCTGTCGTCG 158625 30 100.0 34 .............................. CAGAGCTCCGTTAGACTCTGGGGATCATCCGGCT 158689 30 100.0 34 .............................. TCCGTCACGGCCGTCACAGTCGCGTTGAGGCCGG 158753 30 100.0 34 .............................. TCACCGATCCTGTGATTGTTATTCGATAGGTCCA 158817 30 100.0 37 .............................. TCCGTGCTCGTTGCGCGCCGTGAGTCCGCCCCAGCGC 158884 30 100.0 35 .............................. GTCGACGTCAATCTCTCGTTAACGCGCGTCGGCGA 158949 30 100.0 36 .............................. CTGCGAGGCTTGCTGCTCAGCCTCCTCAACTTGCCG 159015 30 100.0 36 .............................. TGAACAAGCCGAAGGGCAGTGCCCTCCTCTTGGACG 159081 30 100.0 36 .............................. CTTGAGAATCCACGCGGTCGACTCCGATGGGTGCTC 159147 30 100.0 35 .............................. ACGTTGATCACTCGCTGACAACGGACTACCAGTCG 159212 30 100.0 36 .............................. TCATGATTACCCGCGAGGCTGAAGTACGTACACGGC 159278 30 100.0 33 .............................. GCGGCGTCGCGTCCGAAACACCCTCAAGACTCA 159341 30 100.0 36 .............................. GCGGCTACAACGCCGTTGCGTCCGTGAGTGAAGTTC 159407 30 100.0 35 .............................. CACGAGTTGGGGTATGGGGTGATGCGTGCGCCCGC 159472 30 100.0 40 .............................. CGTCGTTTATCAACTCGACTGAGAGCGGGGCGATTGATGC 159542 30 100.0 35 .............................. GTCGGGGTCGCGCTCAGCTACTCGGGGCGCATCTG 159607 30 100.0 36 .............................. TCTATCTCTGTCACAACAATATTTACACAACCTATA 159673 30 100.0 35 .............................. GTCCACGGCAACGACTTCGCGCCCTTGAAGGCCGT 159738 30 100.0 37 .............................. GCCGCGTCGAGCTCCGAGTCCGGAATGAATGGGGAGT 159805 30 100.0 37 .............................. ACCACAATGTACGATCACATCGTTAGCTTCCGCGAGA 159872 30 100.0 35 .............................. AGCGCCGTCGTCCGCGAGAATCTCGATGACGCGGA 159937 30 100.0 36 .............................. TCCTCGCGGAGTGACGCCGAGGATGCCGCCGAGACG 160003 30 100.0 36 .............................. GTGGAAGAGGCGTAGGGGCACGCCGAGAAGGATGCC 160069 30 100.0 35 .............................. TTCGAGGTCAGCGACCCAGCGGTCGTAGTCGCGGC 160134 30 100.0 37 .............................. CCCGTACTGCCGCCGAGCAGGTCGAGAATCGGGAACG 160201 30 100.0 36 .............................. ACGAAATGGATATGCGGAACCTCACCACGGCTCTCG 160267 30 100.0 36 .............................. GGAACTCGTCAACGTCTCCCCCGACTGCATCGTGAA 160333 30 100.0 35 .............................. CACTTCAAGGACGTCCGCGCCCTGCTGCTCGGTTT 160398 30 100.0 36 .............................. GCGCTCACTCCGCTCGATGAACGACCCCCACTCAGG 160464 30 100.0 36 .............................. GTAGACCTCCATCTCCTCCGTGTAGTCATCCGCGAG 160530 30 100.0 36 .............................. GACGCGGTCGGCGGCGATAGTCGTCAAGAAGTAGGC 160596 30 100.0 36 .............................. AAGTCGGTGACCCCGTCACGACCCACACAACGATGT 160662 30 100.0 36 .............................. GGGGCCAACGGGGTCAAGTGTGCGTGCATCCACCTC 160728 30 100.0 37 .............................. GGACGTGTCCCGTGGCTCGGGCGGGCAAGGTCCGACG 160795 30 100.0 35 .............................. CTGACGAATACGATAGAATCTAATACAGCCCACCT 160860 30 100.0 33 .............................. GCAAAGCCATGCGGTATGCGGCCGAACGCGGCG 160923 30 100.0 35 .............................. TCTGCCTGGCCGGGACTGGTTATCTGGCTGGACGC 160988 30 100.0 33 .............................. ACTCGGCGCGCTCTCGTCACTCTCACGCGACGT 161051 30 100.0 35 .............................. GAGGAGGCGGCACGACGGACGGGAGAGCGTGCGTC 161116 30 100.0 35 .............................. CTGCTCGACGAGGAGGAGTGGACGTGACCGATCAC 161181 30 100.0 34 .............................. CGAGGGTGCCGGTGACACGGCGTTCAGCGACGTC 161245 30 100.0 36 .............................. GCAGACCGAGCAGAGCGAGACGTCCGCGTCGACGGT 161311 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 78 30 100.0 36 GTTTCAGACGTACCCTTGTGGGGTTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGCATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGATGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGATAGGACCCACCTGATGCTAAAGCTCTGTCGCCGCTATCTTATTCACGTCCAGAACTCAGTACTGGAAGGGGAAATTTCGGAGGGAGATCTAGCGACACTGAAAGGGGAGATTGAAGATATCCTTCAGGAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGATGATCCGGCCGAAGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCAGGGGGTTCGGGGGGATTGAGGGTCGACGGAAATGATGAAGTGTATACCGCTGGTAGAAGTGATATGGTGAGCAAAATCGCCATG # Right flank : CGGGACGGGCGAGTCGCCGCTGACGGTGACGTCGACGCCGTACTTGATTCGATTGTCGGCCTTCCCACAGGGCCACAAGAGAACGAGGAAATTGCGACGGAGCTTGTACCGTGGCTGTTGGCCGTCCTCTCAACTACTGGTTGAGAACCGTTCCCGAAGCGCAGCTTCCCGAGTCTCGAACTGCGCGACCTTCGCACCGAGGTCGCGCTCAACGCGTTCGATGTGGGCGAGCGCGGCGTGGCCGTCGAGGCCGGTTTGCCCATCGTCAGCCGTCTCTGCACGCACCTGCTGGCGGTACGTTTGGGTGAGTCGGTCGAGGGTGCCCGCGGGGTTGAAGAGGATGTCGTTGGCGACCCGGACGTACCGGTCGAGTGCCGCGCCCTCCTTACCGGTGTAGAAGTGGGTGAGAGCGTGGGTGGCGCCGGAGTGGAGCGTCCACATGTCGAGCTCGAAGGGGTCGTCGGCTTCGGCCCGGGCGTCACTGGCGGCGCGCTCTGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 316688-313295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKO010000002.1 Halarchaeum rubridurum strain DSM 22443 Ga0451173_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 316687 37 100.0 36 ..................................... TCCATCACTCCCCGTCCTCCGTCTCGGGCGCGTCGA 316614 37 100.0 35 ..................................... GCGCTCGACGCGTGGCTGAAGTGCCACGAGGCCCC 316542 37 100.0 37 ..................................... ACGTCGAGGCCGGCGAGTTCCTGGAGGGCGTTTGAGG 316468 37 100.0 34 ..................................... GCGAGCCGCTGCGACCACTCGGGGACGTCGTCGT 316397 37 100.0 35 ..................................... CATCGAGCGGCGGCGCGACGGCGGCCGTCGCGCTC 316325 37 100.0 34 ..................................... GCAGCCTCGCGAGCGCGGGCGCGCGAGCGCCTCG 316254 37 100.0 35 ..................................... TCGTCTGAGCGAGATTCTCCTTTGCGAGCTGGGCC 316182 37 100.0 35 ..................................... ACGTCATGCCGACCGCCCCTCGTAGAACGCGCTCG 316110 37 100.0 39 ..................................... AGGTCGGGCGTGCTCACCGCGCGTCACCCCGTTCGGTTT 316034 37 100.0 36 ..................................... TTCAGAACTCGCCCGGTTAGCAGACTCTCGACGAGG 315961 37 100.0 36 ..................................... ACCCCGGCGTCGCGGACGACCCCAACTCTTCGTCGG 315888 37 100.0 36 ..................................... GCGGACTACTCATCATCGCTCACCTCCTTGTTTCCG 315815 37 100.0 35 ..................................... TTATCACAACAACCGGCCAGACTGTGGTTCGGGAT 315743 37 100.0 33 ..................................... AGTAGTAGGTTGCTGTTTCACTTCCGGCGTCCG 315673 37 100.0 38 ..................................... ACGTGCAGTACGCGATGGATGGGCGGGGGAGTCGCCGC 315598 37 100.0 37 ..................................... GTCTGGAACCCACGCGGATGCGTCTCCATACTGATCG 315524 37 100.0 35 ..................................... GCTCCTCGACGCTCTCTTTCGGACGGTCGGCGGTG 315452 37 100.0 34 ..................................... TCGGACACGAATCTCACCCTCTCAATTCCGCATC 315381 37 100.0 36 ..................................... ACATCGGCGAGCGTCAGATCGGTCAGGACGCGGGCT 315308 37 100.0 34 ..................................... AGCACGCAACCGTCTGGGCCGTCACGCGCAACGA 315237 37 100.0 44 ..................................... GGTCACACTCCTCAGCAAGCACATCGCGGACACAACCGCGCTGT 315156 37 100.0 36 ..................................... AGGAGTAGGGTTCTATGCGGTGTAGGTCGCGGTCGC 315083 37 100.0 38 ..................................... GAAGAACAGGCAGCCCAGAAGCGCCGCAACGAGATTAT 315008 37 100.0 35 ..................................... GTGTGGGCGGCCTCGTCGACGTGGGCGAGCAGCTG 314936 37 100.0 37 ..................................... ATCGGCCCGCGTCGGTCAGCCAATAAACCTTGGCGGA 314862 37 100.0 37 ..................................... ATCGGCCCGCGTCGGTCAGCCAATAAACCTTGGCGGA 314788 37 100.0 37 ..................................... ACGAGTACGAGGAAGTCGGGTCGGTGACGGTGCGTGG 314714 37 100.0 34 ..................................... GCCCTCCACCTATCCCTCCTGGTGGCGTCGACAC 314643 37 100.0 39 ..................................... TGCCGACCGTGACGGCCATGCGACCGTCGTGCGTCGACG 314567 37 100.0 37 ..................................... AGATCGACAACCTCGACGCCAAGAACGCGTACGACTG 314493 37 100.0 37 ..................................... TTATGGAGGACGCCGGTGTAGCGGTCGGTCTCGTCGA 314419 37 100.0 37 ..................................... AACTGCCAGACGGTCGCGCTCGCGCAGTCTCCGACGG 314345 37 100.0 36 ..................................... ACTGGTAATCACTCGGTTCGCTGTCCATACTGCGGG 314272 37 100.0 36 ..................................... CTCCTCACCGACGGCGAACGAGCCGCAGTACGGGAC 314199 37 100.0 36 ..................................... TCGTCCTTCGGGACCGGCACCGTCACGGACTCCAAC 314126 37 100.0 37 ..................................... CTACTGGAGCGCGATGCAGACGAGAATCGGCTGAACG 314052 37 100.0 35 ..................................... CTGGCTGCGCGTCCGCGCCACCGATGTAGACGCGA 313980 37 100.0 39 ..................................... ACCGCACTATGACGGCGCGAAACGGACGGTCATGTGCGT 313904 37 100.0 34 ..................................... ACGATGGCTGAGAGCCGTCGCGCGTTCTCGGACG 313833 37 100.0 35 ..................................... TCCCGGACACGGAGGTGCTCGACGATCTCTTCCGC 313761 37 100.0 34 ..................................... TCGTCGAGTGCGTCGGCCGTCCGCTCACGGCGCT 313690 37 100.0 36 ..................................... TCCCGGACAGCAACGTCAAAACCGACCTGCCGAGTG 313617 37 100.0 37 ..................................... GGAGGCTGGATAACTCAATTTCCGGCGCGTTCGCCTA 313543 37 100.0 36 ..................................... TTGATGGCGATCTCGATGTGGCGGCCGGGCTTCGCA 313470 37 100.0 34 ..................................... CGGGCTGCGCTCGAAAGAGTGGCTTGACGTGGAG 313399 37 100.0 31 ..................................... CCTCCCAGTTATCGACTACGTTGGCGGGTAT 313331 37 94.6 0 .............................GC...... | ========== ====== ====== ====== ===================================== ============================================ ================== 47 37 99.9 36 GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CTAGAGGCGGCAGACGGGACTGTCGTACTCAACTTCGATGGAGGGCCGCGAGAAATCTTTCTGCCGTTGACCGTTGCTGCGATTGCTCGACCGACCGCCGTTGACCTGGCACTCCAGTTCAGAGATGTGGACGAGGAGATCGAAGAACTCACGATTCCGAATCTAATGAGTCGTCCATCGGATGCGACCCTTGAGACGCTCCGCTATCTCGTCTCTGCCGATGAAGAAATGACACTCCCCCAGCTCTCCAAGGAGGCTGACAAATCCCGGAGCACTGTCGGCCGACATCTCGATGCACTTGAGGCCGATGGCACCGTCGAGACATGGATGGAAGGGAAAACGCGCCACGTCGCTCCAACGCTCGCCGGTCAACTTCGCGTATGATCGCCGTCTTCGTGGACCCTTTTCAAAGCCGTGGACAGGTGGGGTCCACGAATCGACTCCCCTCTCACGCGTCTTCAGAGAAAGATATAGGTACTATCCCCGAAAAAATACCCCCT # Right flank : AAACGCTACGGGACGCCTGGTCGATGACCGAGACGATGGTGTGTTCGTGGGAGAGCGAGCGCTCAGCGGCCTCGGTCGCCATTGGTGGCGCCGGCGGCACGAGTGCTCGTCGCCGTCGCGTTCGCGTCGGCCGGTCGTCCGCCGCGGGTCGTCGTGGTGTTCTCGTCGGTCGACGGCGCAGTATCCGCCGTCGCGTTCGAGTCGGCCGTCCGCTCGTCGCTCGGCGTCGTCGTACGCTCACCGGACGCCCGTTCGTCGTTCGGCGTCGCGTTCGTGCCGAACGCATTCCCGTCGCTCCCCGTCGCCGCCGTATCCTCGCCGGGCGTTCGTTCGCCATCTACCACTGCCGTCGCGTTCGCGCCGGACGCATCACCGGCGCTCGGCGTCGCGTTCTCGACCCGGTCGCTCGCGGGCGTCGCCGGTCGGTCGCCGCCGGCCGTGGCGGGCCCGCCACCGACCGGCGTCGCGGTGCGGTTGCCGTCGGAACCGGGGTGTCGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 2 327696-330587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKO010000002.1 Halarchaeum rubridurum strain DSM 22443 Ga0451173_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 327696 37 100.0 37 ..................................... AACGCTTCGAAGGACTCGGGGAGGGGGTGGCCGCCAT 327770 37 100.0 36 ..................................... AGGTCTATCTTCGCGTAGTCTCCCTGCGTCGTCTTC 327843 37 100.0 35 ..................................... GACTACGAGCGCGGCGTCCCAATTGAGGACGTCGT 327915 37 100.0 34 ..................................... AACTCGACGGTCGCGAGGTCGTCCGTCGAGACGC 327986 37 100.0 36 ..................................... ACGTCGTCGTCAACGAGACCGTCACGCTCGACAACG 328059 37 100.0 36 ..................................... GCCGCGACGATCGCGTGCTGCTCGCGGCGGCGCTCG 328132 37 100.0 48 ..................................... TCTGACGCTCTATCACCGGTATTGTTAAGTTGATAACCTGCGACGGTG 328217 37 100.0 36 ..................................... GCCGCAACAGCGATGTCGACGATGTCGGTGAGGTTT 328290 37 100.0 34 ..................................... GCACCGAGTGGCGGCTCATCTGCCTCGATTGCGA 328361 37 100.0 35 ..................................... AGCGCGTCGACCGTATCGTCGTGGAAGCCCTCCGG 328433 37 100.0 44 ..................................... AGGGACTGCATCTTGTCGGGTGGTTCGCGGAGCCCCTGAGCTTC 328514 37 100.0 36 ..................................... CGACGGTGGTACTGTACGGGTTTGACGCGCCTATCG 328587 37 100.0 35 ..................................... AAGAGCATGCGCTTGATGGAGTCGTCAAGTGGCGC 328659 37 100.0 35 ..................................... AGCATCCTCCAACTCTACTTCGACGATAATCGCGA 328731 37 100.0 36 ..................................... AGCATGGATTAAGTATGCGCGCGAGGAGGTGAATCC 328804 37 100.0 37 ..................................... AGTTTACGGTCTCCGAGATGCGGAACGCGAACGGCGA 328878 37 100.0 40 ..................................... GATTCAGCCCCGTCGAGTGGGACATCGCCGAGACCCTCAC 328955 37 100.0 35 ..................................... GAACCAATCCGCGACGAGGCTGGTGTGCATGGCGA 329027 37 100.0 35 ..................................... TCGGTTGCGTGGTACATCTCTCGTGCCATACTACA 329099 37 100.0 35 ..................................... AGGACAAGGAGGACCGGCAGGATGCCCCAGAGGGC 329171 37 100.0 37 ..................................... CTGACGTACATCGACAAGGCCGATAGCCTCGGCGGGT 329245 37 100.0 36 ..................................... ACGCCGAGACTTCGGTCACGCGATCCGTCGCAAGTG 329318 37 100.0 35 ..................................... ACGACGACGAGAGTGAGACCGAACCGGATGGTGGC 329390 37 100.0 35 ..................................... CTTGATGGATTCGAGGGGTCAATCAACATCCTGAT 329462 37 100.0 37 ..................................... ACCGAAGCCGATGCCCGTACTCAATCCCGCTCGGGCC 329536 37 100.0 38 ..................................... ACGTAGATGCGGCGTGGCAACTCGGTGCGCGTGGTGGT 329611 37 100.0 37 ..................................... AAAGAGCACGCGGATGCCGACCCGGAACTGGCGGTTG 329685 37 100.0 36 ..................................... TCACGGTCACGGTGTTCGCCGCGTAGTCGACCGAGT 329758 37 100.0 35 ..................................... AAGACAAGCGAATGCGAGACGAGTTCTTCGCTATA 329830 37 100.0 39 ..................................... GATGCCGTGACACGGCTTTCCGTCGTCGACGTGTGCGGT 329906 37 100.0 34 ..................................... GCGACGGAGAAGGAAGCAGAGCGCGAAGAAGAAC 329977 37 100.0 34 ..................................... TCCGTCACGTCAATAGTGTCCACAGGCACGCTGG 330048 37 100.0 35 ..................................... GTCGAACTCGGGGAACGGCGTCGCGTGCGCAATTG 330120 37 100.0 36 ..................................... ATCAGCAGGACGGCGGGGAGGAGCCACCACGGGATC 330193 37 100.0 32 ..................................... CCGGCGAATAGGTCGAGGCAGACCCGAGTCAT 330262 37 100.0 37 ..................................... CGAATGAGTCGGCGCTCCATCGAGATCGGGACGTCCG 330336 37 100.0 36 ..................................... TCGTCGCTCCATCCCCGCTCGGGCTGGCGGCCGAGG 330409 37 100.0 32 ..................................... GCGTACCACGAGTCCTCGAAGTCTCGTGGCGG 330478 37 100.0 36 ..................................... CGTCAGCAGTCAACCAGACGCGACGACCATCGTCAG 330551 37 94.6 0 ..............................G.A.... | ========== ====== ====== ====== ===================================== ================================================ ================== 40 37 99.9 36 GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CGCACTTCGACTATCGCGTGAGCCGTCGAAAGGCGATCCGACAGCAAGTGATCCTCCTGCGGAAAGCGATCACGGGCGAGCTCGACGACTACCACGCACTGGAGGTGTCGAGATGAGGTTGGCGGTGACGTACGACGTCAGCGACGACGCGAATCGGCGGCGCGTCTATCGGACGCTCGAACGATACGGGGCGTGGCGACAGTACAGCGTCTTCGAACTCGACGTCTCGAAGAGCCAGCGGGTCGAACTCGAAGACGAACTCGAGAGTCACATCGAGCCAGCCGATGGCGACCGTATTCGATTGTATCGACTCTGTGAAGCCTGTCAGAAGGCGACGACCGACCTCGGAACGGAGCCGCCGGGGGAGCAGTCGAACGTCATCTGACACCCCCTTCGTGGACCTTTTTCAAAGCCGTGTACAGCGGGGGTCCACGAACGGTCGCCACTCTCTCCTGCCGCCAGAGAAAACTATAGGTGCCATCCCCGAGAAAACACCCCCT # Right flank : CACGACGCGGCAGCTGTTTCAATCAGTAGATATCGACAGTAACGACCGATTTCGCCGAGAGGGAGGTCTCGACGCGATAGTGGCGGCTGTCAAGGGCGAGGGGACGGTCGCCGGCGGATCACTGTCACGTGTAGTCGCGTCGGACCGGAGTATGGCCGGGACGGACTCAATGGCGGAGTCGAAGAACACGACAGCGCAATCGGCCATGAGGGGCGATGCTGGGCAGCCCACACGACTGCGGGACGGCGTCACGCGCCTCGGAGTGCAGAGACGCGACGACGAGTGTAGCTAACTGTCGACCGTCTCGGGATCGAACCACCATCGGTCGAGGCGAGGGAACGCTTCAAGAACCGGAGGCTCGGCGACGAACGCGTCGTGATACCGGTGATGACCGCTCCCACGATGGCTTCACGTCTCACTCACCGACTGGCGGACCGATAGTGGTTGCTCGCGTGGTAGCGGGTTCTCTCCGTGCCGAGCCACGGCATACTTGACGGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 3 426294-424861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKO010000002.1 Halarchaeum rubridurum strain DSM 22443 Ga0451173_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 426293 37 100.0 37 ..................................... AGCGGAGAGCCGACGAGGCCGCGCTTAACGACGGTGG 426219 37 100.0 38 ..................................... AGAATCAAGTGACGACGCCGCTCTCGTGGAACGACGCG 426144 37 100.0 35 ..................................... TATCCGATGATCGACTTTGTCGAACTCAACTCCGT 426072 37 100.0 35 ..................................... GGTGATGAGCGCGTGCTGTGTCGGTGTGATGCGGA 426000 37 100.0 39 ..................................... TGATCGTGTCGATCCTCTCCGTCCTCGGGATCGCGCGCT 425924 37 100.0 36 ..................................... GGAGACGCGAGAGACCGAGTTAACGACAACTGCATC 425851 37 100.0 38 ..................................... CTCTGGGGGATCATCCCGGTCATCGTCGTGCTGGCCGT 425776 37 100.0 37 ..................................... ACAGCGTGTCGCACTCGGGGACGCTCGCGGACGGCGC 425702 37 100.0 34 ..................................... ATGGTGTGGGATTTCCCGAGGCTCGTGGGGGCGT 425631 37 100.0 35 ..................................... ATGTTGATCGAGTTCCAGAACGACGACGGGGAGTT 425559 37 100.0 45 ..................................... TCACAGTGTCGTCTGACGTTGACAGCGCAACCTCAAGCCAGAGCA 425477 37 100.0 33 ..................................... TGGTACGCCGTCGGCACCGTCTTCCCGTGCCGG 425407 37 100.0 36 ..................................... GACGCTCACGGCCCCCGTGCTGACGAGGACGGCGGC 425334 37 100.0 38 ..................................... GAGTTGCAGCCCGGCCTCAACGCGACTGTGACGGCCGT 425259 37 100.0 34 ..................................... AGTGGCGCGGCGACGAGTCGAGAACTGCCGGACA 425188 37 100.0 36 ..................................... GACTGTCACGTCAGTCCCGACAATATCCAGTGCAAA 425115 37 100.0 36 ..................................... ATCCGCACCGTCGTCCGGGAGTCCGTCTGGAGCGGG 425042 37 100.0 35 ..................................... AATCAGCAGGTTAACGAATCGATTAACGAGCGCGT 424970 37 100.0 36 ..................................... GAGACGGGCCAGGAGTCGATGAGCGGGATGCACGAG 424897 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 20 37 100.0 37 GTCGCAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : TCCGACGAGCGCTACCAGCTCGTCTTCGAGGGCGAGCGCGGCTTCGTCGTCGTCCAGCCCTACGAGGAGCTCGGCCCGCAGGCCTGAACCGGAGCCACTACTCGGTCTCGACCTCCTCCTCGCAGACGACGTCCGCGACGACGCGACGCTCGCCGTCCGCGTCGTAGCAGTACGTCTCGTCGGCCACTTCGTCCTCGGTCGCCCGATGCGAGCCGTCGCAGAAGGGGTGGTCGTCCGAGAGCCCGCATCGACAGACCGCGACATCGCCCTTCTCCGGGTCGATGTCGTCGGCGTCGAGTTTCACGGGGCCGTGCGCGTCGCGTTCGACGAGGCGGGACATACGGAAACAAAGACGACGGGCGCACAAGACGCCGGCGACACTCGGGGCACGCTTCGTCGACCTTTTTCAAAGCCGTGTACGGTGGGGGTCCACGAATCGACGCCGCGCTATCGCGGGTGGAGCAAGCTTTATGCAGCCTATCGGTGAATATTCATCCCCT # Right flank : TGTTCTTGCTCGGCGCGGGCGTCGGCTACGTCTTGAATCTCCGGAGAGTGTGTATTCGGGTGGCGAATCGAAGTGCCAGTTGACGCCGACGCGTTCGCCGCGACGCAACCCCGTCCGTCGCGGACGGCAAAGCCGCGGCCCGCCGGACCCGACCGGGTGAAGCGTTGGCGTCGAGACCGGATGCACTTTAGCCCGCATGCCCGGACTGGTCGGTCGCGAGCGACGCGAACGGTGAACACCGTGAACCGACGAGGCCACCTCGGTTGTCCCTCGACTGCGGAAGCAACACAGAGGCGTGCAGCAGCGGTCCTCGTCAGTAACGCGAACGAGGGGCAGCGAGACAACGTGTTTCGGACGGGTGCCGAACGAATATGCATCTCCGAGCGGAAGGGTCGGCCAGTGCGTTCCGAGTATCAGGACCTCCTTCTCTTCGGCGCGTACAGCGTGTGTGGTGCGCTCGTCTTCGTCGGCGCGAAACTGGGGATGCCGGACGTGCCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //