Array 1 48265-48032 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDB01000041.1 Helicobacter cinaedi strain JCHOHcF02 isolate F02 scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48264 36 100.0 30 .................................... CAGCATTCACACCGCCCACGAACACATCTT 48198 36 100.0 30 .................................... TCAATCGTTTGCGTCCTAAGTTTGAAAGCA 48132 36 100.0 30 .................................... TACACGCTCACAGCCCATAAGCTAGATTCA 48066 34 86.1 0 ....................A--.........T.T. | T [48037] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAATACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 21226-21527 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDB01000008.1 Helicobacter cinaedi strain JCHOHcF02 isolate F02 scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 21226 37 100.0 29 ..................................... TGCTGCTATGTGGAATACAAAATCATAAA 21292 37 100.0 29 ..................................... CTAACTTTAGGAATAATAGGAGGATTTTT 21358 37 100.0 30 ..................................... AGTTCTTGTAATGCTTCCTCTTGTGTGATA 21425 37 100.0 29 ..................................... TACGATTTTCCATAGAGGTAAATCTTTCC 21491 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 5 37 100.0 30 AATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : AAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACTTAGTAATATGCAAGTGAGATTGAATGGA # Right flank : CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTAGCAAACTACAATTATATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACCGAGTATAAAAACGGGTATAGACTTGTCATATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACAGTATTTCGCTACACCCTTTATATTATACCAATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAATTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 21624-21792 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDB01000008.1 Helicobacter cinaedi strain JCHOHcF02 isolate F02 scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21624 36 100.0 30 .................................... CGAGTATAAAAACGGGTATAGACTTGTCAT 21690 36 100.0 31 .................................... AGTATTTCGCTACACCCTTTATATTATACCA 21757 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 99.1 31 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACTTAGTAATATGCAAGTGAGATTGAATGGAAATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACTGCTGCTATGTGGAATACAAAATCATAAAAATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACCTAACTTTAGGAATAATAGGAGGATTTTTAATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACAGTTCTTGTAATGCTTCCTCTTGTGTGATAAATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACTACGATTTTCCATAGAGGTAAATCTTTCCAATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTAGCAAACTACAATTAT # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //