Array 1 217405-217923 **** Predicted by CRISPRDetect 2.4 *** >NC_009613.3 Flavobacterium psychrophilum JIP02/86, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 217405 36 100.0 33 .................................... ACTGAAAAAAGCACCATTTTCAATATCAGTCAC 217474 36 97.2 33 ......................A............. AGCTGAAAAAACACCCCTTCTAATAGTAGTTAC 217543 36 94.4 33 .................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGTAGTCAC 217612 36 100.0 33 .................................... CTCTGCAAAAGACCCATCTCCAATAGTAGTCAC 217681 36 100.0 33 .................................... ACTGAAAAAAGCACTATTTTCAATATCAGTCAC 217750 36 100.0 33 .................................... ATCTGCAAAAGCCTCATCTCCAATAGTAGTCAC 217819 36 97.2 33 ......................A............. GCCTACAAAAGCATACCTTCCAATAGAAGTTGC 217888 36 80.6 0 ............A.....C.........TT.TTG.. | ========== ====== ====== ====== ==================================== ================================= ================== 8 36 96.2 33 AGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : CCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGATTTGTGATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTTTCCAATAGCAGTCAC # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1327110-1325548 **** Predicted by CRISPRDetect 2.4 *** >NC_009613.3 Flavobacterium psychrophilum JIP02/86, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1327109 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [1327105] 1327033 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 1326957 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 1326881 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 1326805 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 1326729 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 1326653 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1326577 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1326502 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1326426 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1326350 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1326274 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1326198 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1326123 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1326047 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1325971 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1325896 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1325820 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1325745 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1325669 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1325593 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGACAAAAAACAATTTACAACCGATATGAAACTTGTTTATACAGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //