Array 1 126747-126229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMJ010000009.1 Escherichia coli strain UFMG-H10 NODE_9_length_196959_cov_8.440055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126746 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 126685 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 126623 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 126562 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 126501 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 126440 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 126379 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 126318 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 126257 28 75.9 0 .A.........C..T....T-.G.....C | C [126232] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153940-152447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMJ010000009.1 Escherichia coli strain UFMG-H10 NODE_9_length_196959_cov_8.440055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153939 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 153878 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 153817 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 153756 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 153695 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 153634 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 153573 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 153512 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 153451 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 153390 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 153329 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 153268 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 153207 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 153146 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 153085 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 153024 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 152963 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 152902 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 152841 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 152780 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 152719 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 152658 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 152597 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 152536 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 152475 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //