Array 1 2287066-2285842 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CM001469.1 Listeria monocytogenes FSL J1-208 chromosome, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2287065	    36	 100.0	    30	....................................	TGGAAAGCTCTGCAATCTAAAACACTCAAT	
   2286999	    36	 100.0	    30	....................................	GTGAAGCTAGATGACGGTTTCAAAGCACCG	
   2286933	    36	 100.0	    30	....................................	TATGCTTCTAATAAACTGTTTGCTAGGGTG	
   2286867	    36	 100.0	    30	....................................	GGGGATTCAGATTTTAATGGCATTAATCGA	
   2286801	    36	 100.0	    30	....................................	ATTTGTCCATATCGAGCTTACTTTGCAGAG	
   2286735	    36	 100.0	    30	....................................	TGTTTTTGAAAGTGAGACAATTGAAAGTAT	
   2286669	    36	 100.0	    30	....................................	AAACAGCGTTGAGATTCGACACAGTCAAAG	
   2286603	    36	 100.0	    30	....................................	ATGTTGCTAAAAACGCATTTAAACAGTTTG	
   2286537	    36	 100.0	    30	....................................	ATAAGTTTTAAAAAAGAAAACGGAAAATAC	
   2286471	    36	 100.0	    30	....................................	TTTTTACACCTGCAAACGCACTTTCGAAAT	
   2286405	    36	 100.0	    30	....................................	ATTCTTTTTGCTCCATTTCATCAATTACAT	
   2286339	    36	 100.0	    30	....................................	AATATTTTTCATTAGAAGAAGATGTAAAAG	
   2286273	    36	 100.0	    30	....................................	AGGTTTAGCACCAACTTTGACGACGATGCA	
   2286207	    36	 100.0	    30	....................................	TCGAAAACGATTACTACTATACTCGGTTAT	
   2286141	    36	 100.0	    30	....................................	CCATTAGCAATTCTTTTGAATACACCGCGC	
   2286075	    36	 100.0	    30	....................................	ATGTGTTGAAGGCTGGAGAACATTTCAAGA	
   2286009	    36	 100.0	    30	....................................	ATGAACGAATATCAAAAAAATAAGGAGATT	
   2285943	    36	 100.0	    30	....................................	AAATAGAGTTTTCTACCAAATGAGTCACTT	
   2285877	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	 100.0	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                              	       

# Left flank :   TGACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAGTAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAACCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGACACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAACCCAAATAGATCCCAAATACGTACATAAAATC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//