Array 1 1172-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNTA01000039.1 Escherichia coli strain 1513e NODE_39_length_44566_cov_24.464862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1171 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 1110 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 1049 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 988 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 927 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 866 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 805 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 744 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 683 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 622 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 561 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 500 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 439 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 378 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 317 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 256 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8684-10115 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNTA01000013.1 Escherichia coli strain 1513e NODE_13_length_99707_cov_21.956859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8684 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 8745 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 8806 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 8867 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 8928 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 8989 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9050 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9111 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9172 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 9233 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9294 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 9355 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 9416 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 9477 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 9538 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 9599 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 9660 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 9721 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 9782 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 9843 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 9904 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 9965 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10026 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10087 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.1 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //