Array 1 340591-340881 **** Predicted by CRISPRDetect 2.4 *** >NC_020411.1 Hydrogenobaculum sp. HO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 340591 24 91.7 43 .T...G.................. AAGATTCTAACCCTGGGAACATCTCACTAAGTTTTAGGTTTTG 340658 24 91.7 42 .T...G.................. CGCTAGTGACAACAAACTGTAGTGCATGACCAATAAGTTTTT 340724 24 100.0 43 ........................ GCACGCACAAAAACTGCACAAAAACTGCTAAAAAATGGTTTTT 340791 24 100.0 43 ........................ TATAGTGAATAACATCATTTTTACATTTTGCAATGAGGTTTTT 340858 24 95.8 0 .......................A | ========== ====== ====== ====== ======================== =========================================== ================== 5 24 95.8 43 TGTGTACCTATAGGGGATTGAAAC # Left flank : AAAAGTATCTCTTCTTATATAACAGAAAAGTTAAAGGCTTTGGATTTGAAAGAAGATATACAAACGCTTATGCAGACCGAAGGCGATGTAAGGAAAACCTATTATCAGGCTTTTAACAGTATACTAAAAGATATGGAATTTGAAAAAAGAACCAAAAGACCACCGGAAGACCCTTTAAACGCCATGATATCTTTTGGCAATTCACTACTTTATACTACAGTGCTTAGTGAGATATATAAAACGCATTTGGACCCGCGCATAGGATACCTTCACGAAACAAACCAAAGAAGCTTCACTTTAAACCTTGATATTGCAGAAGTTTTTAAGCCGGTGATTGTGGACAGAGTAATTTTTCAGCTTTTAAATAAAAATCAAATAACTGAAAAGCATTTTGACAAAGATATAAGTTTTGCTTACCTAAACGAATCAGGGCGAGAGATATTTGTAAGAAGTTTTGAAGAAAAGCTAAATACAACAATAAAATACAAAAATATGTTTTG # Right flank : AGAGTTTTTGTTAGGTTATAGAATAATTGCTGAGATATATAAGAATGTCATGGTTTATGCGTTCACAATGTAGTGAATTTGTAAAATACATTGACAAAATGCATAAGTTGTCATATAATATACTATAATATGAAAATATAAATTAAGATATTTAAGGAGACTTGTCAATAATTTTGTGTCTCATAACAAAATCTCCTGTTGAATATTTGTAAAACTTCATATGAGGACCCTTTTAATGCAGGAACTGGCTTACTCCACTTATTGTTCTTTAAAATATCTCTCTGGACAAGGATATTTATTTCAAGAATCTCAGCAGATTGGAAATAGCCTCCTAAGTTTATCCTTGCTTTTTCAATCATGCTATTTATACTTTCTACGGGATTGGTAGTATAAATATGCTTTCTTAGATTTTCTGGATATTTCAAGAAGCATAAGTACCTTTCTTTGTTAGCTTTTATCCTTTTTATGAAGCTTGGATAAATAGACTTAAATCTCTCACA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTACCTATAGGGGATTGAAAC # Alternate repeat : TTTGTGCCTATAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 346993-347154 **** Predicted by CRISPRDetect 2.4 *** >NC_020411.1 Hydrogenobaculum sp. HO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 346993 30 100.0 35 .............................. ACAACACCTTTGCCGTTTACAAGCACGTTTGAAGA 347058 30 100.0 37 .............................. TGATTTGACAGCATCAAATACAGTTGCAATAATCTGA 347125 30 93.3 0 ............................AA | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 97.8 36 GTTTCATCTGAACCGTGTGGGTTAAGAAGC # Left flank : ACTTGTGAATCGTGGCATACTTGTCTTTATAGGTGCTCACTCAACTTATACACCTTCGGATTAAAATATGTTATACTATCTACATTGGGGCTTATTGAGCTTCTTAAGTTTTTCTTAAGAGCTGGCCGCACTTCAATAGCTGAATAAGCGTAGAGAGTGTTGGTATGCTTGTGTTGAACCCCACGGCATTTTTAACTTTTTTAGTTAGGGTTTTTAGTAGGTTGTTTATACAAAAATAAGTTTTATTAGCCTTCCAACTTATTGTCTGACAAGCAATTAATTTTGCCGTAAAACCGTAAAGCCGTAATTACATAAAACCGTAAAGCCGTAATTACGGCGAATTTGTAAAAAGCTTGTTAGACAATTATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGGGGGGGTACCCCCTTGACAAAACCATTGATACACTATATAATATTAGGAGTAGTGATTTCTGGG # Right flank : AAGAAAACGTATTGTATAAGTTCAGATAGACTGAACATAGAGTGCCTGAGCATGTTTCAGATGCCTGTCTTCTTAAAAGACACTAATCTCATGATGTAAAAAATGCCCTTGGCACACTAGTGCGTGAGCATGTTTCAGATAAGCATGTTCTTAGAATACACTTATCACACGACAAGTATGCCACACAATAGTAAGAAATGCCTTTGGCACACTAGACTCTTGAAGAAGTACATAGAAAATACAACTTTGTAAGATCTACAAATCTACCACGGTTTATGTGTTCACGATGTAGTGAACTTATACACTATAGTATGCCAACGATACTCCTTACATCGTAAGTAAAAAGTTTGTTAAAAATATAAAAGCATTTAAAACATGCTTACAGCATTCTATTTATATCCTATCCAAACTCATTCACTTTGTAGGCTAATTTTACCTATATCAGAATATGCTATATCTCCGGCTATTACATAAGATTTATTTTGATATTTAAAAGCCAG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGTTAAGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 591447-592133 **** Predicted by CRISPRDetect 2.4 *** >NC_020411.1 Hydrogenobaculum sp. HO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 591447 28 100.0 38 ............................ TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG 591513 28 100.0 38 ............................ TATAAGTATGAAGCGTATGAATATATTATACCTGATAC 591579 28 100.0 39 ............................ TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA 591646 28 100.0 38 ............................ TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG 591712 28 100.0 38 ............................ GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG 591778 28 100.0 38 ............................ GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT 591844 28 100.0 37 ............................ GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC 591909 28 100.0 38 ............................ GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT 591975 28 100.0 38 ............................ GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT 592041 28 100.0 37 ............................ GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG 592106 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 11 28 100.0 38 GTTTCATCTGAACCGTGTGGGATATAAA # Left flank : TGTTATAATTTTTTTGTATGTATGTGTTCACGATGTAGTGAACTTGTACAACTTATACAATTCGGATTAAAATATGCTATAATATTTACATAGCCATTAGGGCTTATTGAGCTTCTTAAGTTTTTCTTAAGAGCTGGCCGTACTTCAATAGCTGAATAAGTGTAGAGAGTTTTTACATACTTTTGATAACCCCACGGCATTTTTAACTTTTTTAATTAGGGGTTTTAGTGAATTGTTTATACAAAAATAAGTTTTATTATCCTTCCAACTTATTGTCTGACAAGCAATTAATTTTGCCGTAAAACCGTAATTACATAAAACCGTAAAACCGTAATTACGGCAAATTTGTCAAAGGCTTGTTAGACAATGATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGAGGGGTACCCCCTTGACGAAACCATTGATACACTATATAATTTTAGGAGTAGTGATTTCTG # Right flank : ATTATATATACCTCCCAAACTTGCGTTTATATTTAAAATACTACAACACAATTAACTTGACAATGCTTTTTATAAGTTCAATATATCGTGAACACATAAACCTTGCTTATAAAACGTGGCATGCTCGTCATATGATAAGTATTTGTTAAAAAGATAGGTATCTGAAAAGTGGTAAACCACTCTGCATTCATAGTCTATCTGAACTTATACATACTGTTTGATTAGCTTTTATGGTTTTTATTATAGTCAAATAAATTATTCACGTTACTATTAGTAAAATGGGGGATCTATAAAATGAGGGTAAGAATAGTGCTTAAAACAGATGAAATGCCACTTTTATATAGGCATAGGATTATATCTTTAATTAAAGAGGCACTTATGAGGTCCGATAAGGATTATAAGGAATTTTTGTACGATGGTAAGATAACAAAACCCTTTACCTTTAGCTTGATGTTTCCTAGAACAAAAGAATTTGTAAATAAAAAGGTTATTATAAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGATATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 4 929301-928155 **** Predicted by CRISPRDetect 2.4 *** >NC_020411.1 Hydrogenobaculum sp. HO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 929300 29 100.0 35 ............................. TTGGCATCTACAAATTTAAACTGTATCTTTGGAAG 929236 29 100.0 38 ............................. CCTCTATCAGGCTTGAAATCTTCATTTTTTAATATCGC 929169 29 100.0 36 ............................. TTTTACAATATTGACTCTAATCTATAAAAATGATAT 929104 29 100.0 42 ............................. CCATATCATAAAAAAATACTCTATTTCTTGATACAAATCATA 929033 29 100.0 36 ............................. TTAAATTAGGGAATGGTGTTTGAAATTCAAAACTTG 928968 29 100.0 37 ............................. TCCAGAGTTTATGCTTTGGTGTAGAGTGTATAAGTGT 928902 29 100.0 36 ............................. TCTTGTATATCAAATGCAAACAATCCTAATGATTCT 928837 29 100.0 37 ............................. GCTTGTTCTAAGAGTTTGAAAATCCTAATCCACAGCT 928771 29 100.0 37 ............................. ATCATGGACGCTGCGATTGAACTACTTGCTTACAACG 928705 29 100.0 35 ............................. CCTTTTAAGATTTTCTTCATTTTCTTTTCTCGCAA 928641 29 100.0 37 ............................. ATGGCTTGGCATATTAGACCCTGTCAAACTAAACACA 928575 29 100.0 34 ............................. ACACATTTTAGCGTCACAGACAATGATGGACTGA 928512 29 100.0 38 ............................. TACTTCTTTTACATTGTTAATGTTCCTTTCAACAAAGT 928445 29 100.0 37 ............................. AGTCAATCAAGCAGTGCAAGACTTTATAAATTGGACT 928379 29 100.0 37 ............................. CTATCTACTACGCTAAATCTTTAACGTGGGATGGACA 928313 29 100.0 36 ............................. CTTTACGAAAGATTGAAGCCAAAGAGAAAGAAATTT 928248 29 100.0 36 ............................. TTGCTTTAAATGTGTTGTGGAAGGTGTGTAATAATA 928183 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ========================================== ================== 18 29 99.8 37 GTTTCATCTGAACCGTGTGGGTTAAGAAG # Left flank : TGTCTTATAACATGTCTCTGTTAAAAAGACAGGCATATAAGACGTGCTCACTCAACTTATACACCTTCGGATTAAAATATGTTATACTATCTACATTGGGGCTTATTGAGCCTCTTAAGTTTTTCTTAAGAGCTGGCCGTACTTCAATAGCTGAATATGTGTAGAGAGTTTTTACATACTTTTGATAACCCCCACGGCATTTTTAACTTTTTTAGTTAGGGGTTTTAGTGGATTGTTTATACAAAAATAAGTTTTATTAGCCTTCCAACTTATTGTCTAACAAGCGATTAATTTTGCCGTAAAACCGTAAGTACATAAAACCATAAAACCGTAATTACGGCGAATTTGTAAAAAGCTTGTTAGACAATGATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGAGGGGTACCCCCTTGACAAAACCATTGATACACTATATAATATTAGGAGTAGTGATTTCTG # Right flank : AAGAAAACGTATCCTTTAAATACTGTATGAGTTCAGATAGAGTGTGAGCGCACACCTTGTTAAAAGTATGTGTTCACGATGTAGTAAACTTGTGCATTGATATTGACTTTTACTTTATATATGGTATAATAATAGGCTATTAAGTTTTATAAAATGGAGGCAATATGGATAGCGTGAAGACTATAAGGCCAAAACCACAGGATATTAAAAGAGAGTATTGGATAATAGACGCTAAGGATATGGTGTTAGGAAGACTTGCAGCTAAATGCGCCAGCATCTTAAGGGGTAAGCACAAGCCTATATATCAACCAGATGTAGATTGTGGTGATTTTGTAATAGTTATAAACTCTAAACTGGTAAAAACCACAGGTAATAAGCTAAGAGATAAAGTCTATAAGTTTCATACAAACCATCCAGGCGGTCTCAAAGAGAAGTCTCTTGGTTTCATGTTGGAAACCAATCCAAACCAAGTTATTATGTTGGCGGTAAAGAGGATGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGTTAAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 930895-931319 **** Predicted by CRISPRDetect 2.4 *** >NC_020411.1 Hydrogenobaculum sp. HO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 930895 29 100.0 36 ............................. TGATTATGAGTTATTGACAAATGATACGGTACAATG 930960 29 100.0 37 ............................. TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA 931026 29 100.0 39 ............................. TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT 931094 29 96.6 37 ............A................ GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG 931160 29 100.0 36 ............................. AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT 931225 29 100.0 37 ............................. TCTTACCTACTATTTGACCTTCATACATAATAAAGCG 931291 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.5 37 CTTCTTAACCCACACGGTTCAGATGAAAC # Left flank : CGATTTAAATCTATAAGTATATAGTTTAGCTTAGATGCGTATTTTTCTAATTTGGTATTTTTAACAATAGGTAAAGATGTGGGTACGTTCCATTCACCTTTTCCATGATAAAAAACAATGTTGATAATAGGAGGGTAATAATCTTTTTCTTTTATAGCTTCTTCCCAGATAGCGGCGTTGTAGTATAGAAGCTGAATAGGTAATTCTTTATCAAGATAAGATTTGTGTTCAAGTACAATCCTTATATAAGCATCTTGATCTTCTACCTTGCAGCTAAAAAGTAAATCAAGCATAAACTTTTGAGATTTAGAAGAAAACTTTTCTGTATTAACAGGTGTTATAGAGTGTATCTCTTGCCCTATATCTTTAGCAAAGATATCAAGAAGCAATTTTACCCTCTTAGGGTCAGAAAATATCTGCTTAAAAAATGAATCATGGGGCTGTATATCCATAGATCTATTTTACTACAAATTAAAAGTATTTAGAGGATACGTTTTCTT # Right flank : CAACAAGCCTTTTACAAATTTGCCGTAATTACGGTTTTGCGGTTTTATGTAATTACGGCTTTACGGTTTTACGGTAAAATTAATTGATTGTCAGACAATAAGCTGGAAGGCTAATAAAACTTATTTTTGTATAAACAATCTAATAAAACCCCTAACTAAAAAAGTTAAAAATGCCGTGGGGGTTATCAAAAGTATGTAAAAACTCTCTACACATATTCAGCTATTGAAGTACGGCCAGCTCTTAAGAAAAACTTAAGAAGCTCAATAAGCCCCAATGTAGATAGTATAACATATTTTAATCCGAAGGTGTATAAGTTGAGTGAGCACCTATAAAGACAAGTATGCCACGATTCACAAGTCTGCCACACCCTACAAGTCTGCCACACCCTACAAGTCTGCCACACCCTACAAGTATGCCACGGTTTGGTACCTATACTTCCCTTCATGGTACCCACCACACTTAACTCCTTGTAAAATTTTAAGGAATATTTTAACAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTAACCCACACGGTTCAGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 6 1024574-1024077 **** Predicted by CRISPRDetect 2.4 *** >NC_020411.1 Hydrogenobaculum sp. HO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1024573 30 100.0 38 .............................. AGTTTGTTTTTTATCACAAAGCCCCAATTTTTAATCTT 1024505 30 100.0 37 .............................. TCCATAATCGGCACTTTATTAGTTTTGATGTCAATGT 1024438 30 96.7 37 ...............G.............. AATGATACCACACAAGAAAGCGACACACAAGAAGGAA 1024371 30 100.0 34 .............................. TATTTTAATATTTGATTCATTATTTCCCTAATTT 1024307 30 100.0 39 .............................. TTTGATTAAAGAGTTTGACTTTACACCATCATTGTTTAA 1024238 30 96.7 36 ......C....................... TCCTCCTCGAATATCGGCGTGACGCCGACTTGAAGA 1024172 30 96.7 36 ......C....................... AATCTTCTATATCGTCTAATATACGCTCTATCAATA 1024106 30 86.7 0 .........................T.CTT | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.1 37 GTTTTGTTTGTACCTATAGGGGATTGAAAC # Left flank : GACACCTGCGCTGGGGAGTTTAGGGCTTATACGCCTTATTATTACTCCTCTTGGGAATATCCATACTATAAAATCGGGCAAGAAGAAGCTATTTTTGACAACGACTAAATTTTGCATAAGTCCAAAAACTACTGCCAAAGATAGACATAAATAAACCATCTCATAAAGATTTTATTTCCTAATTTTATTTTCTAAAAGCCTAAAAATGTTAATATAATTTCTAAATTATTAACATCAAAATCCCCAAAATCATTGTCTATCAACGATCTGTCGATCGGCAAAAAATTATTAAAAAACGCCTTGTTTTCAAACAAAAAAATACCTCATTTTTGGCATCTCAGCTATATCTGACAAAGAATTGTCGATCTCCTATGATTTTGCTCCTATTGACGATCGACGGGAAATATGTTATATTATAAGCTGTTGATAGGTTGATGGGGTACCTCAAAAACCTTGCCGGCGAAGGGTTTTAGGGTAGTTCACAATTTTTTCATTTTGGT # Right flank : TTGTAAATAATGTTAGTAGTAGCAATTTCTGGTTTCATCTGAGCCGTCTGGGTTAAGAAGCTGTGAAATCATATCCTTTAAATACTTTTGATTTGTAGTAAAATAGATCTATGGATATACAACCTCACGATACATTTTTCAAGCAGATATTTTCAGATCCCAAAAGATTAAAGATGCTTCTTGATATCTTTGCAGAGGATATAGCACAGGATATACATTCTATAACACCCGTTAATACAGAAAAGTTTTCTTCTAAATCTCAAAAGTTCATGCTTGATTTACTTTTTAGCTGCAAAGTAGAAGATCAAGATGCATATATACGGGTAGTACTTGAGCACAAATCTTATCTTGATAAAGAACTACCTATTCAGCTTTCATACTACAACAGTGCTATCTGGGAAGAAGCCATAAAAGAAAAAGAGTATTACCCTCCTATTATCAACATCGTTTTTTATCATGGAAAAGGTGAATGGAATATGCCAACATGTTTACCTATTGTT # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTGTACCTATAGGGGATTGAAAC # Alternate repeat : GTTTTGCTTGTACCTATAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 1088952-1092284 **** Predicted by CRISPRDetect 2.4 *** >NC_020411.1 Hydrogenobaculum sp. HO, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1088952 29 100.0 39 ............................. ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC 1089020 29 100.0 40 ............................. CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA 1089089 29 100.0 36 ............................. TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA 1089154 29 100.0 35 ............................. TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT 1089218 29 100.0 38 ............................. TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA 1089285 29 100.0 37 ............................. CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT 1089351 29 100.0 37 ............................. ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT 1089417 29 100.0 36 ............................. GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA 1089482 29 100.0 35 ............................. ATCTCCTACAGCACTCCATTGATAATATGTTATTT 1089546 29 100.0 36 ............................. TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA 1089611 29 100.0 36 ............................. TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT 1089676 29 100.0 38 ............................. TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA 1089743 29 100.0 39 ............................. AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC 1089811 29 100.0 40 ............................. CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG 1089880 29 100.0 37 ............................. TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG 1089946 29 100.0 38 ............................. TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA 1090013 29 100.0 36 ............................. TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG 1090078 29 100.0 37 ............................. GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG 1090144 29 100.0 36 ............................. TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC 1090209 29 100.0 39 ............................. GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA 1090277 29 100.0 36 ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1090342 29 100.0 37 ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1090408 29 100.0 36 ............................. TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA 1090473 29 100.0 37 ............................. TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT 1090539 29 100.0 36 ............................. AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG 1090604 29 100.0 36 ............................. ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC 1090669 29 100.0 37 ............................. TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA 1090735 29 100.0 36 ............................. GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA 1090800 29 100.0 38 ............................. GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA 1090867 29 100.0 37 ............................. CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA 1090933 29 100.0 36 ............................. TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT 1090998 29 100.0 36 ............................. CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG 1091063 29 100.0 36 ............................. TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT 1091128 29 100.0 37 ............................. TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA 1091194 29 100.0 36 ............................. AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA 1091259 29 100.0 42 ............................. ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA 1091330 29 100.0 37 ............................. ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA 1091396 29 100.0 36 ............................. GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT 1091461 29 100.0 36 ............................. CTACCAATCGCATCTACGCCTATCACCTTCCAACCA 1091526 29 100.0 37 ............................. TTGATTACAAACATTATCAACGCACTTGTAAAACAAA 1091592 29 100.0 37 ............................. GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT 1091658 29 100.0 37 ............................. TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT 1091724 29 100.0 37 ............................. GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG 1091790 29 100.0 36 ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1091855 29 100.0 37 ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1091921 29 100.0 41 ............................. ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG 1091991 29 100.0 36 ............................. ATTACTGAAAAATTGCAACAATTATTAAACTACATG 1092056 29 100.0 39 ............................. CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA 1092124 29 100.0 36 ............................. AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT 1092189 29 100.0 38 ............................. ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA 1092256 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 51 29 100.0 37 GTTTCTAATTAACCGTGTGGAGTTGAAAG # Left flank : ATAAATAACTTCAATGATTAAGGGCTTTATAAAAGCCCTGTGAACTTCAACAGCTGAATATGGCGTTAGAGTTTCTAATGAAGATATTCTTCCGCTTTAACAACTCCGCCGTATTTTTCTTTATATTCTTCTAACTCATTTAGCTTTTGGACTATCAGATCTCCCATAGATATTTTCTTGGTTATAGCCTCTATGCGCAAAGCCCGGTGAACATCGGAAGGTAATAAAACTGTTGTTTTAACCAATTTCTTGCCTTTTTTCCTCATAGATTTAAATATATAATCTTGCCGTAAAACCGCAATGCCGTAATTACATAAAACCGTAAAACCGTAATTACGGCGAATTTGTCAAAGGCTTGTTAGACAATGATTTAAACTTGATAGTGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGGAAATTACCTTCATTTGCGATGGGTACCCCCTTGACAAAACCATTGATACACTATATAATTTTAAATATAGTGATTTCTGG # Right flank : GTTTCATTCTACTTTGTAATAAAGGGTTATCTCTTTGTTGTCCCTTATGATTTTTACGCTGAAGCTTTGGCTGTTTCTTAATGTACCTAATATTCTAAAAGCATCTTCTGGAGAGTTTAGGCTTTCGTTGTTTATAGAAAGAAGTATATCACCTGGTTTTATACCCATCTGGGCAAAAAGCGATCCTGGTTTTACGCTTTTAAACATAAAACCTTTTGGAGTAGGTACAAGGTCTATATCGCTAAACATCTTGTAGGGGTTTGATGTAATTTCAAGAAGCTCGTTTCTATTTACTGTATAAGTATTTTGATTTAAACTACCGCTTAAAAGCTCTTTCAAAGAAGGAAGACCGCTTGGTGTATTGGCACTGTTTATCTTAGCACCTTTTGAAAGTTTTAGAGTAAGGGTTTTGCCGTCGTTGCTTGCTATTATATAAAAAGGTTTTATCTCTTCTATTGTAAAACCGCAAAAACTATCTCCTACCATAAGCACTTTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATTAACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //