Array 1 206106-208572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAZC010000002.1 Klebsiella pneumoniae strain NMI4146_17 NODE_2_length_389115_cov_40.743607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 206106 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 206167 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 206228 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 206289 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 206351 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 206412 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 206473 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 206534 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 206595 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 206656 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 206717 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 206778 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 206839 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 206900 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 206961 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 207022 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 207083 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 207144 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 207205 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 207266 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 207327 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 207388 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 207449 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 207510 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 207571 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 207632 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 207693 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 207754 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 207815 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 207876 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 207937 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 207998 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 208059 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 208120 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 208181 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 208242 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 208303 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 208364 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 208425 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 208486 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 208544 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 373-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAZC010000071.1 Klebsiella pneumoniae strain NMI4146_17 NODE_77_length_408_cov_9.359431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 372 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 310 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 188 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 127 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGACAGGCTTACCCGTATTGAGACGGTTGCTGA # Right flank : GAATGCAGCAACCGGCAAATATATCGCCGGTAAGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //