Array 1 1192984-1194875 **** Predicted by CRISPRDetect 2.4 *** >NC_013960.1 Nitrosococcus halophilus Nc 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1192984 28 100.0 32 ............................ TCCAGGCTTTCCATAAATCTCTTAACAGCCGT 1193044 28 100.0 33 ............................ ATACTTACAAACTTTGAATGTACATCTCCTAAT 1193105 28 100.0 33 ............................ ATGCTGGAAAAGGAAGATCCACGTACCCCGCAA 1193166 28 100.0 32 ............................ ATCGTCGTTGCGGTAGAGGAGAAACTGATGCC 1193226 28 100.0 32 ............................ TACAAAAAATGATAGGTAGGTGGAGTCTTGCT 1193286 28 100.0 32 ............................ ATCCTCCTGGGTTTCGTAGCGGCCATGCTTAC 1193346 28 100.0 32 ............................ AAAAGTTTAAGCATCCCCTCAGACATTTTCCT 1193406 28 100.0 32 ............................ ACTCGGGTGGAAAAGTGCTTCCCGGTAATTCC 1193466 28 100.0 32 ............................ ACAAAGACCGGGCGTTATGGCTGACCAAGCGA 1193526 28 100.0 32 ............................ AAAGATCTATTCATAGACACAGATCATAAGTT 1193586 28 100.0 32 ............................ ACCCGACCCTCGCCGCTTCATCGTATGCGGTC 1193646 28 100.0 32 ............................ CTATGAATAACACACCACTGCGATTCAATTCC 1193706 28 100.0 32 ............................ TGATGCGGTCCGAAGGAGGGCAGTGCCTAGGG 1193766 28 100.0 32 ............................ ACGTGTTTAATAACCCCGTAGTTCGTAGTGGG 1193826 28 100.0 32 ............................ ACCCGACCCTCGCCGCTTCATCGTATGCGGTC 1193886 28 100.0 32 ............................ CTATGAATAACACACCACTGCGATTCAATTCC 1193946 28 100.0 32 ............................ TATCGGATAGGACACGGGAGTCCTACTAACTA 1194006 28 100.0 32 ............................ TGAAGATATTTATGGGGATGAGATAGTTTAAG 1194066 28 100.0 32 ............................ ACCCGACCCTCGCCGCTTCATCGTATGCGGTC 1194126 28 100.0 32 ............................ CTATGAATAACACACCACTGCGATTCAATTCC 1194186 28 100.0 32 ............................ CGAAATTGCGGAAGTCAGCGTGATAGCGTTAA 1194246 28 100.0 32 ............................ TCCTGCCACGGCAATAAGTCCCATCTTGGCTT 1194306 28 100.0 32 ............................ TTCCACAAATCTCTAAGTAACCGCTTCTCCGT 1194366 28 100.0 32 ............................ ATACCGAACACGACGATCTCAGGCCGGATGGA 1194426 28 100.0 33 ............................ ACAGGGGTCTAACCCTATAAGAATCAATATATA 1194487 28 100.0 32 ............................ TTTAGCGATGAAAATAGGTGTTCCGGTGCCGC 1194547 28 100.0 32 ............................ TTGCGTATATTTGGGAGCAAGAGCTGTCTAAT 1194607 28 100.0 32 ............................ TAAAAGATTGCCAATAACTATTCCATCTCTAG 1194667 28 100.0 33 ............................ CTCCTGAATTCATTATTTCTAATTTTTCAGATC 1194728 28 100.0 32 ............................ AGGGGTATCAAAAGATATCTATTTGAATTTCC 1194788 28 100.0 32 ............................ TGACAGCGGATTGACGCATTTATCCCATGCAG 1194848 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 32 GTTCGCCGCCGCGTAGGCGGTTTAGAAA # Left flank : GCGCGGGATGATTTCAATCAGGCCCATAATGGCCGTGCCTTCTAATGCAACAGCAATCGCTTATCGGCGTGATCGTAATGCAGAGAAGCATCTAGCAGGGTTTAGACAACGGCAAATGCGCCGCCGAATCCGGCGCGCCGACTGCACCCAAAAGCAGCTAGGAATGGATTTCAAGTCGGAGGATAGGCTACAGGATAACGAGGAGACGAAGCGGCCACCTTATTTATTGTTAGAACGTGATGGTCGGCGGTTACCTATTCATATCAGCACTGTAAATCTTCAGATTGATACTGATATTTGCCAATTTAGCAGCTACGGGTTGGCTAGAAAAGTTGAGAGTAAGTACTCAGCCGTACCCATGTTCTGACCTTGCTTTATTACATAGGATAAAAAAATAAATAATAACAAATAGTTAGCTTAGTTTAAGAAAATGGAAGGTTTTAGGCTAATGCTCAACGTAAGTCTCTGTGGTTATTGTGTTTTTTTAGCTTTAAGTTACT # Right flank : AAAACACGAAAGCGTTACTTATAGCAAGGTCTTTCGTTACTCCAGTTCTCCTTAACAACACTTTCCCCATGCAGTGGGAAAGAGTAAAGAATACCAATTTGCATTTAACCCCTTTCATTTCTTGTGCCAACCAAAGTGTGGCAACAGTCAGTAAGATTGCAGTGGGTTTTTTGCGAATTGGTATAGGGTACGCTATTTTGTGATATAAGCATGACTAAGCCGTCCGTAGGGCGTCGACAATATTCATCCGGGCGGCGCGAATAGCTGGTAAAAAGCCTCCCACCAGGCCCATCAATAGGGAAAACAATACCGATTGCCATGCAATCTCCTTGGTTAAAGTGAAGGTAAAAGCCAGCTCGGAGAAGGTTTGCCAATTCATGGTGGAAATGGTTAGTAACTGCGTCAACGAGGCGATGGCGAGGCCGACGATACCCCCCATAAAACTCAGGGCGAGGGATTCCAAAAGGAAAGCTTGTAAAATGCTTTGTTGGGGGAAACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCGCCGCGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2010352-2010683 **** Predicted by CRISPRDetect 2.4 *** >NC_013960.1 Nitrosococcus halophilus Nc 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 2010352 38 100.0 34 ...................................... CCACGACCTCCAGCTCCCCCCTGCATCTGCCGCA 2010424 38 97.4 37 T..................................... ACGTATGATTTGCTGCGCTACGGGGTGAAGGTCAAGG 2010499 38 100.0 35 ...................................... TTCTATTGCTTCTCCTTTACGATTCCAGATCCCAG 2010572 38 100.0 36 ...................................... CCTCCACCACTCTAAGGCATAGTCATCCATGGAGGC 2010646 38 94.7 0 G....................................T | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 98.4 36 CGCATCACCCGTCCTTCGGGGCGGGTGTGGATTGAAAC # Left flank : ACCTTTTCTAAACCGTTAAGGAAAGTACAAGCTGTGTTAATTCTCGTGACTTATGACGTTTCCACAGAAACCCCTGCCGGCCGTCGGCGATTACGGCAAGTAGCCAAAGCCTGCTTAAATTATGGGCAGAGGGTACAAAAATCGGTATTTGAGTGCAAGGTTGATCAGGCTGGTTTAGAGGCGCTACAGCGTTATTTGTTGAAAATCATTTGCGAAGAGGAAGATAGCCTTCGCATTTATCGTTTAACCGAACCACTGGAACGAAATGTCCAAGAGTTCGGTAAATTTCGTGCAGTAGATTTTGAGGCTCCGCTAATTGTATAGCGCGAACCCTAAGTGGGCAATGAAAGGCTGGGAGGTTCGCGCATTATGTATGTTATTGAAATATATTGGATTAATGTATCTATAGTTGCACATTTCTGGGGCAAAGTGGATCAAAAAAGACCAGATCGCGCTATGCGTTTTGTGGAACCTGCAATATCATTATCTTGCGGCGACGC # Right flank : TACTCTTAAAGATAAGGCTCCTAGTTTGTTGGCTTTGATGAAACATCGGTTTGAGGCCAATGGCGGAGGAGATCGCGCAGCAGCCAGGGCGCAAGAATACAAGTGCCTGCCGTTACCAGCGCCATGCCCGCATAGACTTCGTTGGAAATTACGCCCATTTTATAGCCTTGGTGGGTAATAATCATGGCAATCTCTGCTCGGGGCACCATACTGACACTAATCAGTAGCGCACTGGTGGGTTGTGCGATGAGTAATGCGGGAATTCCTGCACCGATCACTTTCCCCAAAATCGCAGCCAACAAAAAGACATCCCCAAACCCGATTGCCTGGGTGAGAGCGGTGGGATCAATGTGGATGCCAATACCAATAAAAAAGAAAGGGGTAAAGAAACTATAGAGGTCTTGGAAGGACGCTTCGGTTTTTACTGCCACGGGATCTCGACTGAAGACAAGTCCTGCGAAAAGCGCGCCGATAGCCAAAGAAAAACCTAGCCAGTCGGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCATCACCCGTCCTTCGGGGCGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.60,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 3 2905751-2906492 **** Predicted by CRISPRDetect 2.4 *** >NC_013960.1 Nitrosococcus halophilus Nc 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2905751 37 100.0 32 ..................................... GCACGGCCAACATTACGTTAGCACGAATTTCG 2905820 37 100.0 35 ..................................... ACGTACCTGGTTATGGAATATCTCGCTCACCGTCT 2905892 37 100.0 34 ..................................... TGTCGAACCGGCTATCTAGTATATCGAATAGGGT 2905963 37 100.0 35 ..................................... GTCATGATATGTCTCCTATGTTGATGGTGTTGAGG 2906035 37 100.0 32 ..................................... TCGAGTTCGGAGTTGTCTTCTTCTGTGAGTTG 2906104 37 100.0 33 ..................................... ATCTAAATATACCCCATTGAATTCTATATCAGC 2906174 37 100.0 33 ..................................... CATCCACGGTGATACGTTTAATGCCTGTGGCGA 2906244 37 100.0 34 ..................................... TCAGTATTGATGATCTTTTCCTTCCTATCCTTCT 2906315 37 100.0 33 ..................................... TTAGGGATATTGGAAAAGTCTGTTAAAGCTTTC 2906385 37 100.0 34 ..................................... TCAGTATTGATGATCTTTTCCTTCCTATCCTTCT 2906456 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 11 37 100.0 34 GTTTGAAACGTAGACCTGATAAAGAAGGGATTAAGAC # Left flank : CAAGTTTCCCGCCGAGTGGGTAGGGAGTTAGTGAGAAACGAGCTAGATGTGGCTTTCCTGGCCGATAACCGTCTATATATCATCGAATGCAAAACCCAGCGTTTTGATAATAGCGCCCCTGGGCCGGGCAGCAGAGGTGCCGCTGCCCTCTACAAGCTCGATGCCCTCAAGGATCTCCTCGGAGGGTTGCAGGGGCGGGCAATGTTGGTGACCTATCAAGTTTTGCCTCCCGTGGACCGACAAAGGGCCAGGGATTTGAACATTCAGGTCTGTAGCGGCGCCGAGACCTCTGGGCTGGGCAAAAAAATTGAGGCTTGGGTGCAGTAGTAGCTTGTAATAGGGGGAACCCCAGTGTGGGTTCATTGCCATTTTTGTTTGTTAATAAGTGCTTGGAAATAGAATTAAAGAGAAGATTATGGAGAGTCAGCTTTTGAGCTATCGAAAAAATTGGGAACCCCCTCTGCAACTTTTTGAAACAAAAGGAGGAATAACAGCGAGGA # Right flank : CCATCAATCTTTGTATCTTTATATTTATCTTTTAGTTTGAAACCGTGTTTCCGCACCCTGATGAGTAGACAAAAGGATTTTTAGCCTCCAAATTAGCTTTTCTATTTTAGCTGAGCCAAGGGAGGAAGGGGGCATGGCCGAAGCATACCAGAGCCAGACTTTAGACCATTTAGGGTTAGTGGCCTCAATGTTTGATGAATTGGGTCTGGGCGAGGGTTTGGATGAACAGATCCCGCAGGATCGAGAGCAGCGAAAAGTCTCGGTAGGTCAAGCGGTGAAAGCCCTGGTGCTCAATGGGCTAGGGTTTGTTAATCAACGGCTTTATCTGGTGCCGCGTTTTTTTGAGAACAAGCCTACCGAGCGACTGATGGGTCCGGGGGTGGAACCGGCCCATTTAAATGACGACACCCTGGGACGTGCCTTGGACACATTGTATGCCCATGATGTGACCGCTCTGTATGCGGTACTGAGTGCTCAGGCGGCAAAGCGGCTAGGATTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACGTAGACCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 2908266-2908654 **** Predicted by CRISPRDetect 2.4 *** >NC_013960.1 Nitrosococcus halophilus Nc 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2908266 37 97.3 33 .G................................... AGTGTTAGGTAGTCATCATCGCTAAAATTGGCC 2908336 37 100.0 35 ..................................... CCCGAGCAATAAAGCTATCTCTGAAACGCTGATAT 2908408 37 100.0 31 ..................................... GCCGACCGGCTAGCAGTTCGATTCCTTTATA 2908476 37 100.0 35 ..................................... GAGGAGGATCGACGGAATGAAGTAGCATACGGAAG 2908548 37 100.0 33 ..................................... CTATTTTTACTGATGGAATCATTATGACCCTCC 2908618 37 94.6 0 ................................G..G. | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 98.6 34 GTTTGAAACGTAGACCTGATAAAGAAGGGATTAAGAC # Left flank : CTCCCCAGACCCGCGAAGCGCTGCTCACCCGCAAAAGTCGCTTTATTGTGGCCACCAACGAACTCGATGCCCACCAACTCCCACCGGCTGAACTGCTGACCGCTTACAAGCAACAGAGCCAAGTAGAGCGTGGCTTTCGCTTTATGAAGGACCCCTTGTTTCTCGCCTCTTCGCTGTTTCTCAAATCCCCTCAGCGTATTATGGCCCTGATGATGGTCATGACCTTGTCTCTGCTCGTCTACGCCGCCCTGGAGTATCGGATGCGCCAGGCCCTCACCCAACATCAACAGACTTTCCCCGACCAAAAAGGTCAACCCACTTCCAAACCTACTGCCCGTTGGGTCTTTCAGTGCTTTGTCGGCATCCATGTATTAATTGTGCAACAGAGCCAGACCTACGTCCTCAATCTCCACGACCACCACCGAGGCCTCTTGGCGATCTTAGGTCCCCCTTATGAAACCCTTTATTCTTGAAAATCCACTATAGGGGTGCGGAATGTC # Right flank : CCTATTTATCGCCTCGTTATTGATCTATTTTCTACTGCACCAAAAATTTTTTAGCCGCAACTTTCCTCACCCTATCCCGCAAGCTTGTCATGCCAGACTTTTCTGGGTGGTTATGTTTCAATGGCCGCCATGATGGAATGTGGAGAAAACAATGGCATCTCGACAGCTTTATCTTGCTGCTTATGACATTGCCAGCGCGACTCGTCTGCGCCAGGCTTTGTATTGTTTGAAAAAGTACGCTACGGGTGGGCAAAAATCTGTCTTTGAGTGTTACCTCACGAAAACCGAGCGACGGAAGCTGTTGCGTGAGATGGAAGGAATCATTGATGCCGAAGAGGACCGGTTTTTGCTATTGCGTCTCGACCCTCGCAGTCGGGTTAGAACCTTGGGTATCGCGGTAAAGCCCGTGGACCCGGCATTTTTTTATGTGGGTTGAGAAGGTATAGCGTTTCCCCAAATAAATAGGGCGCGAATATCCGACGCAGTGGGAATTTAATTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACGTAGACCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 3003701-3005980 **** Predicted by CRISPRDetect 2.4 *** >NC_013960.1 Nitrosococcus halophilus Nc 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 3003701 28 100.0 36 ............................ GCTTCTATCTTTTGCTTGCGAATCGTCTCTGCCCAG 3003765 28 100.0 37 ............................ AACAGTAGCGCCACGCTTGATTTCACGACGCTTGAGA 3003830 28 100.0 36 ............................ GGCTTTGATCCAGCAAAAGAAGCCTCTGAACCAGAG 3003894 28 100.0 36 ............................ TTTGCCGGGCCACTTTTACAGGAGTAAAAAATCATG 3003958 28 100.0 37 ............................ TCTACCTCCAAAAGATATGGTTAGCTATCCGTAGCGG 3004023 28 100.0 37 ............................ CAAGGATTAGCGGGTCAGATATCAAGTTTTCTAAATG 3004088 28 100.0 36 ............................ CTTTGGTGATCTTGCCCATCACCTGACCAATGGCGG 3004152 28 100.0 37 ............................ CCGTCCATGGTGACATCCTCTATAAACGCTTCCATAG 3004217 28 100.0 36 ............................ CTTCTCTTTCGCGTATTGCTTCAATTGCCCGTAAAA 3004281 28 100.0 36 ............................ GCTCACCGCTAAACTTCAGCATCAGCTCTAACGGAG 3004345 28 100.0 36 ............................ TTGATGTTCGTGAACGTGTAGGAATCACCGCTAGAT 3004409 28 100.0 36 ............................ TGGATAGACCTATTACCACTTTGTGGCGCGTCCAAT 3004473 28 100.0 36 ............................ CTGCCTAAGCGATAGAAATGTGGCCCCGCTAGTCCA 3004537 28 100.0 35 ............................ ATTTCTGTTGGCGTGCCACCTAAAGAAATTTTCAG 3004600 28 100.0 36 ............................ GGCGATGGTGGGAGCAGACCAAAGGGGCAGACGCCC 3004664 28 100.0 36 ............................ CTGCCTAAGCGATAGAAATGTGGCCCCGCTAGTCCA 3004728 28 100.0 36 ............................ CCTCCCCTCAGCCAATTTCTCAATATATTTTTTAGC 3004792 28 100.0 36 ............................ AATTCAAATATTTGGTCATCCGTCCATTCTGGAGAC 3004856 28 100.0 38 ............................ CCCTTCCTGTAGTCCACGCACCCGGCACGAAAATACCG 3004922 28 100.0 37 ............................ GTCGTCAACGCCCCAGAAATTGGCGCGTCCAAATAGT 3004987 28 100.0 36 ............................ GAGGGAAGATAGCTCGATGCCACAACACCGAATACA 3005051 28 100.0 37 ............................ CGGTAGTATAGTTTTGATAACTGCTGCAAGTGCACGA 3005116 28 100.0 36 ............................ ATTTGCGCTATACGCATCATCGGCTCAATTAGGAAG 3005180 28 100.0 35 ............................ AGCGTTAATCTCAACAATATGGATAACGCTATCTC 3005243 28 100.0 37 ............................ GCGGGTTGAGCATTTGCACCTTGGTCCCGTCGAGTTG 3005308 28 100.0 36 ............................ ATCGACGTGACCTCAGACGCGGACGCGTTCCTGGCG 3005372 28 100.0 37 ............................ AACAAAAACTTGGCCGTATCGCTGACTTATAGCAAAG 3005437 28 100.0 36 ............................ AAGGACGGTTCCGGGAATGCTTATCTCTGGGATTTG 3005501 28 100.0 36 ............................ TTGCTTGATAGGTTGAGCAGCACTCGGTCAGCAAAT 3005565 28 100.0 38 ............................ ATGTCAGGGTTTCTAGGATCGGGAGATTTATATTTCGT 3005631 28 100.0 36 ............................ TTGACCGAGACATCCGGCTCGGTAACTTTTAGCGTG 3005695 28 100.0 36 ............................ GTCAAAAACTTGGTACTCGTAACGGAATGTGTAGGT 3005759 28 100.0 37 ............................ GCTGCGAATATTGCTGAAGTTATGGATTATATCGACA 3005824 28 100.0 37 ............................ TCGTTCATCAGCGGGGATTGCCCTTTTGACAGTTCTA 3005889 28 100.0 36 ............................ CCATTGGCGTCCGAGCTTTCGGTCAGGGCGGTGCCG 3005953 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 36 28 100.0 36 GTTACGAATCCCTATAAGGGGTTATGAG # Left flank : GCGCCACTTTTTAGGGGTGGCTGAGTATGAATCGTTCAAGCGAAAAGTATAAATAATTATGTATATGTTGATAACCTACGATGTGGATGCTAAGCGCACTGAGAAGTTTAAAAAACTGTTACGGCGTTATCTGAATCACGATCAATACTCAGTATTTTCTGGAGACATCACCGAAGCCGAGGCAATCAGGCTGCATCGTGAGCTGAGTCGATTAATGGTTCCAGGCGATCGGGTCACTGAAGTTACGGCAGCTAACCGCCGCAATATTAATGTGACTCACCTATCTAAGAGTGATTCTGGGAAGGGTGAGATGAAAAGGGTACCTGTAGAGGATCACCGACGAGATTTTTCTGTTTTATGACATAATGGTAATTTGCTGGGAACTTCGACCTCCAATGAAGTTGAATACTATTAGGATCGACGCATCTTTATCTGGAATAGCCGGTTATTTTTCCTTTATTATAATGTTGGAAGGTTATTCCAAGCCCTAATATAGAGGG # Right flank : GGATTGTTGCAAATGGCCTTGCTCCTGTATAGCTGTTCTCATTTAAGTTAGGGACAGAGTCCACAATGCTTAAAGTAGGCTTGACAGTTTTGGGGTGAAATCAGCGTGAGCGCTTCGCTGAGGGCCTCATAAAGCTGCTCTTTTGTCCGGGCCGCTTTTTTCTTCAGGACATGTTTTAGCTTAGACCAGGCGTACTCAATGGGATTGAGTTCAGGGTGATAGGGCGGTAAAAAGACCACTTTGGCGCCGGTCTGCTCGATCTTCTCGATCGCCTCTTCATATCGGTGCGCAGCGGCATTGTCTAAAATGACTACTTTCCCTTCCTGGAGGTGAGACCAGAGGAAATGTTCGACATAATAGAGGAAAACCGGGCCATTGAGCGTGCCCTCAAAGCACATCGCGGGAAGCGCACCCGTCAGGGATAGGGCGCCGATGGTGCTGATGCGTTCGCCTTGGGTGGTCGGTTTTTCCCCGTAGGCTCTTTGCCCTTGAGGCGCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGAATCCCTATAAGGGGTTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 3007065-3007353 **** Predicted by CRISPRDetect 2.4 *** >NC_013960.1 Nitrosococcus halophilus Nc 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 3007065 28 100.0 38 ............................ TCGCGCGCGCGCGTATTATATTTATTATTATCTTCTAT 3007131 28 96.4 38 .........T.................. CCAAAGAAACAGGAGCGCTTGCTGTATCCATCATTTAA 3007197 28 100.0 36 ............................ GGCTCCAGAATCAGGCTTACATGAACAAGCTTAAGC 3007261 28 100.0 37 ............................ CATCAGGGAATCCCATCCATTTGTCTATCGAGTGCTG 3007326 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 99.3 38 GTTACGAATCCCTATAAGGGGTTATGAG # Left flank : CAATACTCAAGCCAGCGTTGTTGGACCCGGGGGGTGTGTTTTTGGGGATCGTAGAACGTTTTTTTTTTCGCGTGATCCGGTGCTTTTTCAGCCCTCGGTCCATGGCCGAGGTGCTTATCGTTTCGCCAAAGCGCACTTCAAATCGCTGACACAATTCCTGGAGCGTTAAATCGGGTTCGCACTGCAACACCTCGGTCAAATACTGGGCCCTCGGCTCATCAATCTTTGCCGGATGTCCCACTCCTTCCCCGCGCTTGGGATGGACCGTCCCCGTCTCCCGAAGGCGCTTCAGAAAACCACTGACCGTGTTCTTCGACAGTTTAAATCGTGTCGCCAACTGACGAATCGAACCCTCTTTGTTCGCATAGGCTTCAATGACTTTTTGGCGTAGGTCCAATGAGTAAGGCGCAGGCATAACATTTAAACCCATCTAATTTGGTTGAAAAAATAGATAACTCTAATATTGTGCCTAATAAAAACGGGAATTGCTATATAGCCGC # Right flank : GACTATAGGAAGTAAAAAGGTCAGGCCTTGCAAAGTGCATTATAGTACTGAAGAGGCCAACACTTTGGTTATTCATTGGGGCTGATCGAGGCGGGATCAGGTTTCCAAGAGAGCAAGTTACCCTTGGGCTTTTCACACTGCCAAGATAATGCGTGCTGAAGGGGTTACCCATGAGCTTGTTCCTAGGGGCTTAACTAGATGGCGGCTGTTGCAAAAGGGTTGGATACCGAACAAGGTTTGGCGTCCTGGTAAAGGGGGGGATGTTAGCCAGTCAAGTAGGCAGGATTTGATTGTTTGTGTTATCAGTAAGTGATAATCTTTTTGAATGAAGGAGCAGGCGCGTGACTCCAATTTGGACACACTTCTTAACCTGGATGGCAGGTGTTGATGGTCGATCCCTCGGGAAGGCACCGGGTTAAGTTCGTGGTCAAACAGGTAGAGCTATCGCCCGAAAAGCCGCACGGATGGAGCTATTCACTGACCAGAACAGTGAGCGGCTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGAATCCCTATAAGGGGTTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //