Array 1 244394-245213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP089098.1 Klebsiella pneumoniae strain EH13 plasmid pEH13_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244394 29 93.1 32 ............TG............... AAAAGACAAGCCAGTTTTATTGTCGCTCTTCT 244455 29 93.1 32 ............TG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 244516 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 244577 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 244638 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 244699 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 244760 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 244821 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 244882 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 244943 28 89.7 32 .....-......TC............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 245003 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 245064 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 245125 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 245186 28 93.1 0 ......................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1073650-1074346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP089097.1 Klebsiella pneumoniae strain EH13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1073650 29 100.0 32 ............................. CCTCAATATTGGGATTTACTGATTGAATTGCG 1073711 29 100.0 32 ............................. GCACACCTCAAAATACTGTTAATATATACAGT 1073772 29 100.0 32 ............................. AACCGGTAAATTATTAAATGTTGGTGCGGCCT 1073833 29 100.0 32 ............................. CATGGCTTACGATCAGCTGGCTGAGCGATTTG 1073894 29 96.6 32 .........A................... TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1073955 29 100.0 32 ............................. AACTGATAGCACATCGCCTCAAGCTCTGTTGT 1074016 29 100.0 32 ............................. GCAATAACGCCCTTCGGCATCACGCCTAACAA 1074077 29 100.0 32 ............................. TTTTTTGGTACAGGTGGGAATACAGGCAACCA 1074138 29 100.0 32 ............................. GCGGGAGTGCGAACCGCCGTCCCCGTTATTGT 1074199 29 100.0 32 ............................. TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 1074260 29 96.6 29 .........................G... GGGTTCACTTGGGTGAAACTGAACTAACT 1074318 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCCGTCTGTGGCTGACGCAGCGCGTTTTGCGACAGCAGGGGGCCATTCGGATGCCACAATCTGCCCGATTATTGATTGAATCCGTCTACGGGGAAGATATCGCTATTTCCGATGGTTTAGCCAAAGCCGAGCAAGCGCAGTTGGCAAAATATTACTGCGATCGCGCGTTTGCTCACCAAATGCTCCTGAACTTCAAGCCGGGATATAGCCCCGATAGCAGTGATTTCCTGGCTGACAAGCTCTCTACTCGCCTGGCAGAAGAGTCGATCACGCTGTGGCTGGCGAAAAACGTCGATGGACAGTTGCTGCCTTATGCCTGCGGCGCGCATCCGTGGGAAATGAGCATGCTGCGGGTGCGGGAAAGCTGGTGGCGTAAACACAAAGCTGAATTCACGCTCCTGGCTGAAAAGCCGCTACAGCAGTGGTGTGTACAACAGCATCAAAACCCGGATTTCGCCGTGGTGATTATTGTTACAGACTCGCCGGATTGCGGTTATT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //