Array 1 3095158-3094959 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU917923.1 Mycobacterium canettii isolate Percy50 chromosome McanPercy50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 3095157 31 93.5 34 NN............................. TCGATTGTGCCGCCGCGGGTTTCGTTCACGTCGT 3095090 31 90.3 2 .........................TC.G.. CC Deletion [3095058] 3095064 31 100.0 44 ............................... CCTTGCCAAGGGAGGTGCTGGTGTGCTTATGCCTAACAGGTCGT 3094989 31 80.6 0 .........................NNNNNN | ========== ====== ====== ====== =============================== ============================================ ================== 4 31 91.1 27 CAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GGACGACCCAAAACCCCGAGAGGGGACGGAAACCTTCAACGACGCTGTATTGGGCCATGTGGGCTGGTCTTTCAGTCGTCAGACCCAAAACCCCGAGAGGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCAAAACCCCGAGAGGGGACGGAAACTTGGCGTACATAGCGAGCTGTGCGGCAGTAGAGTGCGGGTCGTCAGACCCAAAACCCCGAGAGGGGACAGACCCAAAACCCCGAGAGGGGACGGAAACTCGATGGCGGCGCGGTTGCGGATGTGGTGGTCGCGTAGCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACCCAAAACCCCGAGAGGGGACGGAAACTCCCCGGGCTGGGGCGTGTGTTCGTAGTCGCCTAATGTCGTCAGACCCAAAACCCCGAGAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACCCAAAACCCCGAGAGGGGACGGAAACGCTTGACAATGCGGTTGTCGCGCGCCTTTTTCCAGCCGAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTAGTTGACGCCAAATGTTTGGACTGTGATCAATTCAAGTCGTCAGACCCAAAACCCCGAGAGGGGATCAGACCC # Questionable array : NO Score: 3.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.29, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 3095257-3095453 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU917923.1 Mycobacterium canettii isolate Percy50 chromosome McanPercy50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 3095257 24 100.0 51 ........................ TGACGACGCTACGCGACCACCACATCCGCAACCGCGCCGCCATCGAGTTTC 3095332 24 100.0 2 ........................ TG Deletion [3095358] 3095355 24 95.8 50 T....................... CTGACGACCCGCACTCTACTGCCGCACAGCTCGCTATGTACGCCAAGTTT 3095430 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================== ================== 4 24 99.0 35 CGTCCCCTCTCGGGGTTTTGGGTC # Left flank : NNNNNNNNNNCGTCCCCTCTCGGGGTTTTGGGTCTGACGACATTAGGCGACTACGAACACACGCCCCAGCCCGGGGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTGTTAGGCATAAGCACACCAGCACCTCCCTTGGCAAGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGAGTCCCCTCTCGGGGTTTTGGGTCTGACGACGTGAACGAAACCCGCGGCGGCACAATCGAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGAAAGACCAGCCCACATGGCCCAATACAGCGTCGTTGAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCGCCTTCGCCTGATCAGGCGTAATCGCCACATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGGTTGCTGGATTCGCCCGTCGCTGCAATTTACTGAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCCCC # Questionable array : NO Score: 4.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-1.55, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCCCCTCTCGGGGTTTTGGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 3096535-3096242 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU917923.1 Mycobacterium canettii isolate Percy50 chromosome McanPercy50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 3096534 24 100.0 50 ........................ ACTTGGTGATCTTCCATGACTTGACGCCGTTGACCGCGATGTCGTCAGAC 3096456 24 100.0 5 ........................ GGACG Deletion [3096428] 3096435 24 100.0 47 ........................ ACATGCCCGCTGGTAGCGGCCCCGGCGGCGCCGAGAAGTCGTCAGAC 3096360 24 100.0 4 ........................ GGAC Deletion [3096333] 3096340 24 100.0 51 ........................ GGAAACGCGGTGCTCGATGCGGCCACTAGGCCGCGGCCAACTCGGGTCGTC 3096265 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================== ================== 6 24 100.0 32 AGACCCAAAACCCCGAGAGGGGAC # Left flank : ACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAATCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTATGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATCGAGTCGTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACCCAAAACCCCGAGAGGGGACGGAAACCAACAAGGTCTACGCGTCGAGGTCCACGGCTCAGAAGTCGTCAGACCCAAAACCCCGAGAGGGGAAGACCCAAAACCCCGAGAGGGGACGGAAACTCGGTGCTGACCCCATGGATGCGAAGCGTAGACCTCTGTGTCGTCAGACCCAAAACCCCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCAAAACCCCGAGAGGGGACGGAAACTTCAGTAAATTGCAGCGACGGGCGAATCCAGCAACCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAGACC # Questionable array : NO Score: 4.55 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-1.30, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGACCCAAAACCCCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //