Array 1 208938-208373 **** Predicted by CRISPRDetect 2.4 *** >NC_012804.1 Thermococcus gammatolerans EJ3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 208937 30 100.0 36 .............................. GAAACCCAAATAGAAGATGTGAACCCCGCCGGGCAA 208871 30 100.0 39 .............................. AAAAGGCGAGCAGAATTTACGCGAAGAAGTACGGACAAG 208802 30 100.0 38 .............................. GGATCCGGCGGATGCCATGCATGCGTCGGGGACGGCCT 208734 30 100.0 38 .............................. AGGCCGATGAGGGCAATGCCGAAGACCAGCCAACCCAG 208666 30 100.0 38 .............................. GCTTTCCCTATAAGCGTCAATATCGACGTATATTTCCC 208598 29 96.7 37 .................-............ GGAGTTCTGCTACCTTCCTCATCAGTAGTAGCGCGTA 208532 30 100.0 35 .............................. CTTTTTTAGACTTGACTAAGTGCTTAAACTCGAAG 208467 29 96.7 36 ..................-........... AGAATTGCTGTGAACATTGCCTGCATAATCAGGGCC 208402 29 86.7 0 ...............C...-....C....A | C [208386] ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.8 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GGGAAAACGGGAAACTCTGAGCCTTTTTCTTCCATTATCATGCTCAAACTACTGTATTTCAGGAAAAATAACCTTTAACGGCTGTTTTTGTTCAGCAAAGTCATTTCAAAGCCCTGGAGATGAATTTCAACTATTTCGAAAACATAACATTCTGTAACAATGTTAATCATCTAATGTAACGAATTTTCTTCAGGACATCGAGCAGACGACTTCCGCTCCCCTAATCCGGATAAAACCTGTTTAAAATTGTTCGTTTCTGGTTTAGAGCCTGTTTAATGTTCGGCCTTGAAAATTCTCCCCTTTTGGAGCTTTGGAGATCAACTGCATTTCGACCTCAATTTTGTTATCTCAGAACATTAGGACCAGGCTAGCCGATTGGAGGTGTTTCAGAGCTTCAATCCGAGTTCCCTCGTGATCGTTTCAAGACCGATTTCCAGAAAGGCTTAAATATTGGGACGTTCTTATTTCTTCGTTGGGCGAAAGGGCAAATTTCGCGCCCT # Right flank : GCAATACAAAGCCGCAAAATATTTAATTCAAAAAGTCAAGGTAGAAACATGAGCCTCAAAAGAAAAATCAAGTCCTTTGTAGAGGACTTTCAGATCTTAATCCTCATTATCGCGATACCCCTCCTCTTCCTCCTGTTCCGGCTGTTTCTCACCGCATCGTATGCACTGACAGGAGGCTACCTCCTCGGGATAATAGCAATCCTCCTTGTACTGTTTGGCATCGGATGGATCCTGAAGCCAGCGAGCGTTAAGAGACGCATCTAAACCTCAACCCACGTGAAGTCCCTCGCGACCTCGCCCGGAATCCCTGCTTCTCTGACCCTCTTCTCCAGAACCTCGTGAGGATAGTTGCTGTGGCTTATGTGCGCGAAGACTGTGTAGCCTGCCCCGACCCTCTTCGCCAGCTCTATCGCCTCCCTAACTCCAAGATGCGAGCCGGGGATGGCTTCCCTGTGGGTCATCTCCGCTATAAGCAGGTCGGCCCCCTCCATGAGCTTTAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 1221278-1222718 **** Predicted by CRISPRDetect 2.4 *** >NC_012804.1 Thermococcus gammatolerans EJ3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1221278 30 100.0 37 .............................. GGAGATTGGTCAACTCTGGCTTGACTGGAGGGCTGGT 1221345 30 100.0 36 .............................. CGCGTAAATGAGGGCCGGGTAATTCGCGAGATAAGC 1221411 30 100.0 37 .............................. ATACTCAAAGCCGGCCCCAACAGCCCCAAAATAATCA 1221478 30 100.0 37 .............................. CTGGATCTCCCACACGGCCTGGGCCTTCTCAACCTGC 1221545 30 100.0 37 .............................. TAGTTCTTAACGAAACTCCGCACCCTCCTCCTAACTC 1221612 30 100.0 38 .............................. TTGGGGTGCTCTACCTCGCTAGGACTGGCAAAAAGAGG 1221680 30 100.0 37 .............................. CTCATTGAATCCCTCTCAACCTCAAGGTACTCCTTCG 1221747 30 100.0 41 .............................. GACTTTGGTCGGGGCCCGCAAAGAGTATCCGAACCTCTCAA 1221818 30 100.0 37 .............................. TTAAGTGTTCATGAATTGATACTGGAAGTCGAAACAC 1221885 30 100.0 35 .............................. AAGCGTTGTTATTTGCCTCATGCCGATCCCCCCAT 1221950 30 100.0 37 .............................. TTTGTCGGGGACTACTTCGTAATGGCACACAACGGCT 1222017 30 100.0 37 .............................. AACTCGTAACTGAAGATGTTATAGTTGCTTCTATCGT 1222084 30 100.0 38 .............................. GAGTTGGTCGTGTGGGTTGGGGTTATCAGTGCATGCTT 1222152 30 100.0 38 .............................. TTCTTCTATGACGTATTTATTGATTTTACTGATTATTG 1222220 30 100.0 36 .............................. GAGCGAGGTTGGGCATCTCCTCAGCGACGGGAGTGG 1222286 30 100.0 36 .............................. AAGAGTGCACAAAAGAATACATTTCAACTAAAGAAC 1222352 30 100.0 37 .............................. AACAAAAAACGTGTTTGACTTCCCGGCCTTTACTTTT 1222419 30 100.0 38 .............................. CCTAATGGCCCCGGTGGTCGGGGCCGCCGACCAAAGCA 1222487 30 100.0 36 .............................. ACGGGAGCACGGCGGAGATCGAGTACACGGTCAAGG 1222553 30 100.0 37 .............................. GGTTGAACGTCACGAACTGGCTCAGGCCTTCGTACAG 1222620 30 100.0 39 .............................. CGGAACAATAATCGGCGAAAAACCACTTTATCTTATCGA 1222689 30 86.7 0 ...............A.AA.....C..... | ========== ====== ====== ====== ============================== ========================================= ================== 22 30 99.4 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GGTCAGGAAGTTCTGGATTTAACCTTTTCTGACATATCACGCTAGAAGTTCTTCAATTTTCAAAAAAGGCTGTTTGAGAGGAGGAAAATTGAAAATCTTCCCTCGAATACGGCTGGAAATCAATTTTTGTTGTTTTAAAATTGTTACTTATTGTTACATATTCCCGCTTGAACTGTAACGAATTTTCTTCGAGAATTGAAACGGAGCTCGTCAATCCCCCAGATAATGCCATAACCTGTGGAAAATGATGTTATTTTAGATTCAACATCTTTAATCGTCGATTTTGGAGTTTAACGGCATCAAACGGATTTGCATTTCTCAAACCGTTTTACCAACATTATAGGAAGGATTCTTCTGGCCACCATTTTGGAAATCCAGAGATGCACAACGACTCCAATTGGAGGGGATCTGTGCCTTCTTTTCCAGAAGGTTTCCAGAAAAGCTTAAATATATGAGAACGTACAACCCCCTGTTGGGCAAACGGACGGAAAATCCGCCCT # Right flank : GAATTCCTCTCCGGACATCTTTTAGATAAGATCACGGTCGAAAACCCCCGCAGATCTCAACTTTCCCCCTACCTATTGGAATATTTCTCCAAGGACGGGCTTTTATCCAAAATCATGGGAGTAATTTATCCTCAATAAAAATTCATTTCCATCCTGCGATATTCTTTAAAGTTTCAATGCACCTTAAATTTTCAGTTCAATATAATACAATGGGACAGAAAAAATTTTTAACAGTAACTTTCGAGAACAGGACGTAATGGACTGGAGGTGAACACTGTGAAACAGAATAGGAAAACAACTTGGCATATTGCAATCCTGATTGGGGTTCTGGTGCTGGTGAGCACTGCTCCTCTGGAGCACCCAGCCGAAGCTTCAAACACATCCATTCAGGGATACGTGGATGCCCTTAAAAGCGCGTTCCGCGAGCTTACCGACAGGGATCTCCAGGGCACCGTCGAGGTAACTCCAGGCTCAGGGTTTGAAATAGATCCCAACGCAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 1857815-1857022 **** Predicted by CRISPRDetect 2.4 *** >NC_012804.1 Thermococcus gammatolerans EJ3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1857814 30 100.0 36 .............................. TGGACGTCAACCGTCTTCGTAACGCTCCAGTAGCCG 1857748 30 100.0 37 .............................. TCGTCTCGCCCGAGTAACCTTCGGAATCGACGGCCCT 1857681 30 100.0 37 .............................. TAAGAGGCGCCGTCTACGTGGAGGGTGACCCCGGTTA 1857614 30 100.0 39 .............................. CAAGTACGCCCCAACAGAGCCCTCAGTCAGCGTCAGCAC 1857545 30 100.0 39 .............................. GGCTTTGGCATCGAGGTAAACGTTTTGCACCCACCTGAA 1857476 30 100.0 38 .............................. AGTTCGGCCTCGTCGAGAACGTCGCTGATGAAGAGCAG 1857408 30 100.0 41 .............................. GTTTCTCCCTGTCAAGAACACTCATGTGCGGCTGGATCAAG 1857337 30 100.0 43 .............................. TCGCTTGAGCAGGGGTTAAGTCCTCCGCCACGATGACGGGCAC 1857264 30 100.0 42 .............................. TAATGATATTTAGCAAGTCATTCACGTTTACAGTCGTCCCCG 1857192 30 100.0 37 .............................. GCCACGTAGGCGTCGTAGCTCTGGATGTATGTTCCGG 1857125 30 100.0 44 .............................. GGGGGCCGAGGGCGGGTGGTTGTCGAGGTTCACGTCGACGTAGA 1857051 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 12 30 100.0 39 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TTATCTGGAAGCTCAGGGAGCTCGGCTTTGAGGTGTTATCACGCTGAAGTGGCCGGTTTTTTGAATTTCAAGGTTATTTTGTCATGCTTTCATGTTTGTGGTCCAGAAACAACCCTGGAGACTGGTTTTGAAGTTTTCCAGAATGTAACATTATGTGACAATTTGTCGTGTTTGATGTAACGAATTTTTTCGAAACTCTGGACGGGGCTCCTTGAATCCGTGAATTTGGCTGGACCCTGCTGAAATCATATTTTTTCGAGGTTGAGCCCATGTAATGGGGTTGTTTGGGATTAGCTAACCGATCACGGCTTTGGAAATCCCAGTCATCCCGAGCGCACGTGGATTTCTGGTCGTCCATTACCCTCCGTTCTGGCCTATCTCTCTTTCAGAAGCTTTGATTCATGGGTTCTAGTGGGTTTTTTGTGGGTGATTTTCAGAAAGGCTTAAATATTGAAACGTTCTTCTCCTTTTGTTGGGCTAAAGGGCGAATTTCACGCCCT # Right flank : AGGAGTTTATCTTGAGGCGCCCTCATGTGAATTCACTTAAGATCCAAGCGCTTACAGAAACTCTTCAAACAGCAGATCCTCAAGCTTTCCTCCAGCTTTTTTGAAAATGCTCACGCTCCAGCCGACGTTTCCAACTTTTTCCGGCCTGTGGGCATCGCTGGCGAAGGTCAGCTTAACGCCCCTCCTTATGCACTCCCTCACGAACTCCAGATCCGGAACGCGGTAGCGGGAGCTTATCTCGAAGGCCTTACCATTTTCCTCGGCGAGCGTTATGAGCTCCAAAAGGTCCTCCCAAGGAGGATAACCTATGTAGGGAAAGCTTGCCCCGAAATGGCCTATTACATCGACGTTCTCGTCGAGGAGTGCAACCCTGACGAGCTCAACGTACTGCTCCGGCCGGTCAACCCACTCGTGAACGCTTGCTATCACGAAGTCGAGCTTTTTGGCCATCCAGTCCGGCACGTCAACGCCGTTGGGGGTTATGTTGCCCTCGATTCCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //