Array 1 248937-251464 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJQB01000004.1 Klebsiella pneumoniae strain EuSCAPE_BE097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248937 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 248998 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 249059 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249120 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249182 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249243 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249304 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249365 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249426 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249487 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249548 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 249609 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 249670 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 249731 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 249792 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 249853 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 249914 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 249975 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 250036 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 250097 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 250158 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250219 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 250280 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 250341 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250402 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250463 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250524 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250585 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250646 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250707 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 250768 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 250829 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 250890 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 250951 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251012 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251073 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251134 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251195 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251256 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251317 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251378 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251436 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65246-66489 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJQB01000022.1 Klebsiella pneumoniae strain EuSCAPE_BE097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65246 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 65307 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 65368 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 65429 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 65490 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 65551 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [65605] 65605 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 65666 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 65727 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 65788 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 65849 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 65910 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 65971 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 66032 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [66043] 66094 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [66099] 66157 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [66162] 66219 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 66280 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 66340 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 66401 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 66462 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //