Array 1 201503-203178 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSGT01000006.1 Escherichia coli strain TzEc060 NODE_6_length_209974_cov_36.468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201503 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201564 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201625 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201686 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201747 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201808 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201869 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 201930 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 201991 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 202052 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 202113 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 202174 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 202235 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 202296 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 202357 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 202418 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202479 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202540 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202601 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202662 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202723 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202784 29 96.6 32 ............T................ GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202845 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 202906 29 96.6 32 ............T................ CCTAGCCCGATTATCGGCATGAGCGATGCGGA 202967 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 203028 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 203089 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 203150 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8981-9742 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSGT01000013.1 Escherichia coli strain TzEc060 NODE_13_length_117754_cov_33.4843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8981 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 9042 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 9103 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 9164 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 9225 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 9286 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 9347 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9408 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 9469 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9531 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9592 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9653 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9714 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //