Array 1 63018-56238 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSKB01000003.1 Halomonas salipaludis strain WRN001 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 63017 33 100.0 34 ................................. AGTCGGACACGGTGAGATTGCTCACTACAGAAGA 62950 33 100.0 33 ................................. CGCGCCATCTACCGCAAGGGTCGCGCCAGCCAT 62884 33 100.0 33 ................................. TTAGCCAGGCGGTGGAGGATGGGCTTAATCCTC 62818 33 100.0 33 ................................. GCATACTCAGGCGAGGCCCCAACTATCGGACGT 62752 33 100.0 34 ................................. AACCCCTAGCACGCCTTACGCGCCTCATGCTATT 62685 33 100.0 35 ................................. GGCAACAGGAACCATCCCGCCCAGCCCTTCATGCG 62617 33 100.0 34 ................................. AACCCTGGCGACAACCCGGCTGATCAGATCGACG 62550 33 100.0 34 ................................. GTCCACATAATCAGGCACTGCCCCGAACCACTGT 62483 33 100.0 34 ................................. AATTAGGACCGCCATTATTTCACCTTAGCCCGGT 62416 33 100.0 35 ................................. AAGCCATCCTCCACCGCCTGGCTAAGAACTCGGCC 62348 33 100.0 34 ................................. TTACACGCCCCGCCGTCGGGGCACAGTGTAAGCT 62281 33 100.0 37 ................................. AGGGCATATCGTGACGATTAGACGCCATGACGTAGGT 62211 33 100.0 36 ................................. CTGACTATTAGGATTGTGCGGGCAATAAAAAACCCC 62142 33 100.0 34 ................................. AATGTGGTGTTTGACCCAATCCTGAGCGTATCGT 62075 33 100.0 33 ................................. TCGTTGAATTGGGAATCCCCGTCCTTTAGGGCG 62009 33 100.0 34 ................................. ACCAAGTCGTCTACGTAGCTCATTAACAATCAGC 61942 33 100.0 34 ................................. GCTTTAGCCACTTGGCCCAGAACGTAGAGCGCTC 61875 33 100.0 34 ................................. CACCACTCCTGCAGCGACAAGAGTGCCAGCGAGG 61808 33 100.0 35 ................................. TGATCGGTCTGCGCCTCGCCAGTGTCGGCCCACGT 61740 33 100.0 33 ................................. CCGCATTGGTGGCGTTGAGCACTTGGGCGATGG 61674 33 100.0 35 ................................. TGGCTGCCGTTAACGCAGCGGGCGGCATCGCTGGC 61606 33 100.0 34 ................................. CGCCATCACTGGTGACGTCGATAGATTCAGAACC 61539 33 100.0 34 ................................. CTTATGGCGGCGATGATTGCCTAATATGGCCCTA 61472 33 100.0 35 ................................. ATTCCAGCACGGGACTCCTGCTTGAGCGCGAAGAG 61404 33 100.0 35 ................................. GATGCGCTAGTCTTGATGCGCCACAACCTCACGGC 61336 33 100.0 36 ................................. CTCAAGGTCATGGCGGTGGGTCGCTAGCTCAGCCTC 61267 33 100.0 34 ................................. CATCAGGAATTGGTGGAATGTCGCCGCCATCTTG 61200 33 100.0 36 ................................. CTCCAGATGTCGCGCAACAACCCCATCTTCGATGTC 61131 33 100.0 35 ................................. GTATCGGCGCTCGTTGATCTCGTAGCGCCCGACGC 61063 33 100.0 33 ................................. TCCTCTCACTCGATTAACATACTCCATCACCGC 60997 33 100.0 35 ................................. AGAAGTGTCTTTGGTAGTATCGCACTTATTGCAGT 60929 33 100.0 35 ................................. ATTAACCCTACAGACGCATATCGACAACTTATAAC 60861 33 100.0 34 ................................. CTCGGCGCCCCCCTTCCCTCGATACGGCACAAGG 60794 33 100.0 34 ................................. TAACGTGGGGCGAAGAGACAGGCCAGGACTGGGA 60727 33 100.0 36 ................................. CACATGCGGGCGCTTACTCCGCGCAGAGCACGTCGA 60658 33 100.0 35 ................................. TTTTCCATATCGCTGAGACGCTCAAGGTGCTGAAG 60590 33 100.0 33 ................................. ATCCTGTCCTCGGCGAGAACCTCGCTCAAGCCC 60524 33 100.0 35 ................................. TACAGCGAGGCCGCCAACGCGATTGCGTGCCGCTG 60456 33 100.0 33 ................................. AAACCACCATCAATAGCGTAGTTCTCGCGCACG 60390 33 100.0 34 ................................. CCGTCTCGCTGCCCTTGATCGTAGCGTCTGCCAC 60323 33 100.0 34 ................................. GCTATCTGTTGAACATACGCTAACTACAGCGCAG 60256 33 100.0 36 ................................. TCGCACATTCGCATGCAGGTAGAGGCGGCCTGCTGC 60187 33 100.0 36 ................................. TCGCCCGGGGGATCTTCGTGTGCGCTGATAACTCGA 60118 33 100.0 34 ................................. ACCAAGTCGTCTACGTAGCTCATTAACAATCAGC 60051 33 100.0 34 ................................. GCTTTAGCCACTTGGCCCAGAACGTAGAGCGCTC 59984 33 100.0 34 ................................. CACCACTCCTGCAGCGACAAGAGTGCCAGCGAGG 59917 33 100.0 36 ................................. TGAAATGAAACTCATCCACATAATCAAGGCCAGCGA 59848 33 100.0 36 ................................. GCCAGCGCTTCAGGATCCCGCGCATACGGCCTAGCA 59779 33 100.0 36 ................................. CCGGTGTTGTTACAGGCGCACGCATGATCTATTCGG 59710 33 100.0 35 ................................. TCGCGCACGTATTGCATGATCTCCCGCGTGCGCTC 59642 33 100.0 34 ................................. CCGGAGACAGACAACACAAAAGATGGATACACAA 59575 33 100.0 35 ................................. GAGTCCCCGTGCTCGCTCCAATCTAGTCCGCCAGG 59507 33 100.0 35 ................................. AATTGCGATTAGTGCATCATACAACCCCTGCGCGA 59439 33 100.0 35 ................................. GAGAACGTGCCGCGTGACCGCGTTGAGTTGTGCAT 59371 33 100.0 33 ................................. CGTGATGATCCAGCCAGCTACGCACTGCTCATC 59305 33 100.0 36 ................................. GGGATGGTGACCTGCTCGGGCTGAGTCACTTCGCTG 59236 33 100.0 34 ................................. TTGAGCAGAGTCTGCAGAAGCCGGCTGCTCGCTC 59169 33 100.0 33 ................................. CTACAACCGTGCGCTGACCCGCACTGCCGCCAC 59103 33 100.0 36 ................................. TCAACCAAGTAAGAGGATCTGCATTATGACAGCCAT 59034 33 100.0 33 ................................. GTTGGCGGCGTCGAGGATGGGCTCTTGTGCGGT 58968 33 100.0 35 ................................. GTCGCGCTCCTCAGCGGCCCACTCACGCAGCGCGG 58900 33 100.0 34 ................................. TAGATATGGGCCTGGCCAGCCCGTGGGCGATGGC 58833 33 100.0 35 ................................. TTTTGAGGGTTGCTTCCTGCAAAGCTGCTGACCTG 58765 33 100.0 35 ................................. ATCGTCGGTTTGCTTGTCCTCTAACGCCTGGTGGC 58697 33 100.0 34 ................................. CAGTTCGAACGGCAGACCGCCGCCCACGCCATAT 58630 33 100.0 35 ................................. CCCGTTACTGGATCGATCCGCGCCTCCCCTCCCTC 58562 33 100.0 33 ................................. ACCTTCCCCAGTCCGTAGCATCCGCCGCATGGC 58496 33 100.0 36 ................................. CATGCCGACGATGGACATGTCGGTCGGATTGGCGGT 58427 33 100.0 34 ................................. TTGGCTACACCGAGCGTCAGCCGGCAAGCGTCCA 58360 33 100.0 34 ................................. GTCGCTCGCAGCGACAAGCCCAAGGCCTTGCCCT 58293 33 100.0 34 ................................. AGCTCGATGGCTGGCCGGCAACGGCTGTGGCCGC 58226 33 100.0 35 ................................. ATAGGTGGCGGTCCTCCTCAACGATGACCCCCAGC 58158 33 100.0 34 ................................. AGATCGCCGGCAGTCTGGTGCTGCAGCAGGCCCA 58091 33 100.0 36 ................................. CTCGAACATGGTGATGCCGGACTCGACCGCCTCGAG 58022 33 100.0 36 ................................. ACCTCCTTGTTACGGGCGTGGTGGTGCTGACGTAGA 57953 33 100.0 33 ................................. CCAACACCGATCTCAAGGTGCTCAACCAGGTGC 57887 33 100.0 33 ................................. ACTGCCGTGCACCTGCCGACCATCGCCACCATC 57821 33 100.0 33 ................................. GACCCCAACACCGGGCAGGTCGTCTACTCCCGC 57755 33 100.0 33 ................................. CCCACCATGCTGCGCAAGATGTGGTCGGGTGGC 57689 33 100.0 35 ................................. TCCCTGCAACGGAAGAGGCCACCGCATGGGTGGCC 57621 33 100.0 34 ................................. ACGCCGAGCTCGACGCCCGCGGCATAGAGAAATT 57554 33 100.0 37 ................................. ACGCCCGGTATCTTGCCGTCTCGGATGGCGGCGTAGA 57484 33 100.0 33 ................................. TTCCTCGGCGTAGCAGCGCAGGATCTCGGTCGC 57418 33 100.0 33 ................................. TCGTTGAGCTCCTCGCGCACCTCCTGGGGCAAG 57352 33 100.0 36 ................................. GTCGCGGCGACCTCTACGCCCAAGCCTGGGTCGATA 57283 33 100.0 33 ................................. AGGCCCAGTGCCGTAGCCAGGTCCGTTTGCCAT 57217 33 100.0 33 ................................. TCTGGCGTCTTGCCGTCATCCTTGACGCCACCG 57151 33 100.0 35 ................................. CTGGGGGCTCTGTATGGTGGCTGGATTGAGATCTA 57083 33 100.0 33 ................................. GCCGGCATGGCCCCGGCATCCTCGAGGTCAAGA 57017 33 100.0 35 ................................. GGCAGCGATGACGTCATCGTCGCCGCCGATCGCGA 56949 33 100.0 34 ................................. TCGCCCAGGGCCAGCTCGGTGGTCAGCCGCTCGC 56882 33 100.0 36 ................................. ATCACGAGCTCGCACCAGACTTCTTGTTCTTCTGTG 56813 33 100.0 34 ................................. ATTGCCCTCGTTATTTCCATCGTCGCCGCCGGAA 56746 33 100.0 33 ................................. ATCATGTGCGTCAGGTCCTGCAGCGCGCCGCCA 56680 33 100.0 34 ................................. CTCGGCGTTGAATGGTTCCGCGAGCGAGCTGACG 56613 33 100.0 35 ................................. GCGCCCATCCGGCCCGGTGCGGGTCTCCCGCTCGC 56545 33 100.0 36 ................................. CTGCGCTGGCGTCCCAGCCATCGGCGTTGGCCACCC 56476 33 100.0 35 ................................. GGTGACACTCTCCCCGTCAGCGTGCTTAGTAACAC 56408 33 100.0 35 ................................. ATGCTCGACGACGAGAAGAAGGCCGAGCGCGCCGA 56340 33 100.0 37 ................................. GAGGCCCAGAACGGCCGCAGCAAGGCCGCTGCAAAAA 56270 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 101 33 100.0 34 GTCGCGTCCCGCACGGGGCGCGCGGATAGAAAC # Left flank : ATCCGATAAGGAGAGTGCCGCGATGATGGTTCTGGTCAGCTACGATGTCAGCACTTCTTCCGATGGCGGCGAGGGGCGACTGCGCCGTGTTGCCAAGGCTTGCCGAGATGTCGGGCAACGAGTGCAATTCTCGGTATTCGAGATCGAGGTCGATCCCGACCAATGGGTGCGCTTGCGACAGCGGTTGATCGACCTGATCGATGATGAAGTCGACAGCCTGCGTTTCTATTTCCTGGGCAGGAACTGGAAGAATCGAATCGAGCATATCGGCGCCAAGCCTGCCTTGGATATGAACGGCCCGCTCGTTTTCTGATTTCCTTAGTCTTGCGAACCCATAGTGTCTGGCACTTTCCCGGTGGGTTCGCGGCTCTTTAATAATATGATTTTGAAAGATTTTTAGATTTATCAGCCGGCTGATGGGTGCTTTCCCTGCGTTACTTTGGCAGTTTCGCAAGATGCTGCCCATTTTGATCGGTATTTCAATGCGTTATAAAGGAGCA # Right flank : AACCCGGCCGATCTTGCCGGTGCCGATGGTCGCGAGTCGCACCCTCACCTGGGGTGTGTGGATAGATGCTTGTGCAAGCGGCGGCCCAGTAGCTAGTTCACGATGCTAATCGGGCAGGATGTGGTTTTTGAACCGCACCGAAAATTGACGTTAAGCCAGCGGCTGGGGAGGTATTTCCCCTTCAGCTTGCATATCGGCCATTGCGTCGGCCACTAACGTCACGACACCGTCGAGGGCCTCTCTCTGGCTGTTGGCCAGCCAAGAGAGGCTCGGCAGCTCGGCGCATTGACCGACGAACTGGTCGTCTTCGGCCGACCAATAGATACGATAGGAGTAATACGTATAGTTGACCATGGCGATATTCCCTTGCTGCTGTGGCCACTTCAGCTTAGAGAGGGTTGGTAGTATCACGACCCTCTCTGGCTTTTCGAATTCGACGATCCGGCAGATCTCGCAGCAGAGCGCCGTGCGAAGGATAATCTCCTTAAACATCCTTAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCGCACGGGGCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //