Array 1 15193-15492 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZM01000146.1 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 strain CCUG 18818 entry146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15193 36 100.0 30 .................................... TTAAAACTTTATTTGAAATATAGAATTACT 15259 36 100.0 30 .................................... ATTAGAAAAAGAAAACTACGAACGACTTTT 15325 36 100.0 30 .................................... GCTTAGCATACTTGCTCCAATCACCGCTCC 15391 36 100.0 30 .................................... ATAAGAAACAGCATTCCATTACACTTTAGA 15457 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TAAAAATTTCAAAAAGGAGAATCTAAATTATATTCTAGCATATAGAAGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 86-256 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZM01000012.1 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 strain CCUG 18818 entry012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= =========================== ================== 86 39 100.0 27 ....................................... TGTGTCCCATGTAATTGGAATTTTGCC 152 39 100.0 27 ....................................... ATTTGATTATCGCGTTAATACTTTTTG 218 39 94.9 0 .....................................AC | ========== ====== ====== ====== ======================================= =========================== ================== 3 39 98.3 28 GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACTG # Left flank : TTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCAG # Right flank : TGCTAAACGCATAGGTGTTCAGCTCTACGTTTTAGTGGGACCCGATTT # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.20, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 51-1740 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZM01000083.1 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 strain CCUG 18818 entry083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51 36 100.0 30 .................................... GATGAAGTTATCGACAAAAGCAAATCAAAA 117 36 100.0 30 .................................... AGGAAGCGGTATATATCCCCACGAAATGTA 183 36 100.0 30 .................................... GATACACTCACACATTCCACACCTAGAATC 249 36 100.0 30 .................................... CTTCCAAGAAAATGAAAAGATTCTCCAATT 315 36 100.0 30 .................................... AGCGACATCGGGGATTGCACCGAGTCCAAG 381 36 100.0 31 .................................... TTTAGACATCCGCGACCTCCGCCTTGCTTCT 448 36 100.0 30 .................................... ATGCAAAACAACATTAACTCTTTGATCAGA 514 36 100.0 30 .................................... GAGGTTCTTTTTGCAAAAAAACAAATCGGC 580 36 100.0 30 .................................... AAGCGCAGGCATTGTATCTGCCCTTAATTT 646 36 100.0 30 .................................... GCTAGTGATTGTTTGACTCGCAGGACTCCC 712 36 100.0 30 .................................... ACGTACGACTACGACTTGGACATTGACAAT 778 36 100.0 31 .................................... GTCCCACCTGTATTTTTTAGTAGTAACATAG 845 36 100.0 30 .................................... ACAAAGTTACTATAATGCTTATCAAAAGGA 911 36 100.0 30 .................................... AAATCATTCTGATGGCACATTAAAGCTTAG 977 36 100.0 31 .................................... CAAAATCCCCGCTGATGTCCTCCCATATCTC 1044 36 100.0 30 .................................... ATAGGAGCAAGAGACTCAAATAAATCCTCT 1110 36 100.0 30 .................................... CTATTTGAGAATTCTACTCGTAATGATTTT 1176 36 100.0 30 .................................... ATATGTCTCATCATTTATAAATGTGCGTAT 1242 36 100.0 30 .................................... ATGACACAAATAATTATAATAGCGGGATTA 1308 36 100.0 31 .................................... CACAACATCGGGGATAGCACCAAGTCCAAAA 1375 36 100.0 30 .................................... GCCGAAATCGCTCATCTTATTGGAATTTGT 1441 36 100.0 30 .................................... CAAGAGCTTTATGCTACAAAAGACAACAAA 1507 36 100.0 30 .................................... TATCGCCGCCGAAGGCGTCGTTTTTCTTTT 1573 36 100.0 30 .................................... CATCATTGGTTCGTCCCTTATCGTCTTTTA 1639 36 100.0 30 .................................... CCACCGACACTTCCATTACCGGCTTTTCTA 1705 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : TTTAAGAAGGGACTAAAACTAAAAATTTCAAAAAGGAGAATCTAAATTATA # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //