Array 1 1135829-1136995 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007142.1 Gynuella sunshinyii YC6258 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1135829 28 100.0 32 ............................ AGCGGCAGGAGTAACAGAGATGAAACAACTAT 1135889 28 100.0 32 ............................ TAAAACAAGTACTGTATAAATATACAGTATGG 1135949 28 100.0 32 ............................ ACATTGCCGTTGGCAGTCACATTGGCATTAGC 1136009 28 100.0 32 ............................ TTGATGACCGGCGCAATCAGTACACCCATAAG 1136069 28 100.0 32 ............................ TGTCCGACAGTTGAGACCGCATTGGCCAACGA 1136129 28 100.0 32 ............................ TGAGCGGCGGTTTTTTTAGGTAATGTTTTTTT 1136189 28 100.0 32 ............................ ACCAGGTGATACCATAACGCCACCAGACGGCT 1136249 28 100.0 32 ............................ CGCGTATTGATTACGCGGGAAATGAAATTAGT 1136309 28 100.0 32 ............................ ATGAACCAGCTGCCTTAGCGGCTGCCGAAAGC 1136369 28 100.0 32 ............................ AGAACTGATCATGGCGTACTTGAACAATTAAT 1136429 28 100.0 32 ............................ TCCAGCTCATCAACTTCATACGTTCCTTTAAA 1136489 28 100.0 32 ............................ AGCGAATACGCGACGTTTGACAATTTCGTTTC 1136549 28 100.0 32 ............................ TCGATTTGTTGCGACGTGATCGCGCTCAATAA 1136609 28 100.0 32 ............................ TCAGATCTTCCCTTTAGCACCGATTCTGATAA 1136669 28 100.0 32 ............................ AATTGGTATGCCAGTTTCAGAGTCAAACTCAT 1136729 28 100.0 32 ............................ GCAGGTCGTCGTCAGATACTAACTTCTTTACA 1136789 28 100.0 32 ............................ GCTGATTAGATTGAGATACATCGTCATGTACG 1136849 28 100.0 32 ............................ CGGCGAAAAGTCGGAGACGAGTTTTTATGGTT 1136909 28 100.0 32 ............................ CATAGCGTAATAGCTCAACAAAAGACTTCCCA 1136969 27 82.1 0 .......A.....C.......-A.A... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.1 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : AATAACAGAACGATTGTTAACATCCTGCTGATGTCGGGTTGGTCTGAGTCGTTGGCTGCACAAGCCAAAAATAGAGACACATAAACCTGCCCATCTTTCAGGCCAATCAAAACCGGTTGCCAACAACAGATGACAACATCACCCGAATACAAAAAATAAAACCGTAGGATGAGTCAGGCGGGTGTAGCACCATGAGTCACTTGCAACCACCCCGTAATCGCAGTACAAAAGCCGCGATGCTGCCAACAGCGATATAGCGGCCATAACAACCGTTATCCGGGAATCGTCCGCAGAATAACCGGATGTTATCGAATAACGGAAGATATAACCGGCGCAGCTGGGAGAAATACCAAAGATTGATACCAAAAATACCAATCTTTTTGGCTCTTTAAAAAATTGCTTGAAAATCAATGGGTTACAACAGGCCCAAAAAACATTGGTGAAACCATCGTTTTTTGGCTAAGTGATTGTTGTGACTTATTTTTTGCGTTTATACTTCA # Right flank : ACTGCATACACGCCAGCGATTAATGATTTCCGGCATTGGCTTTTAATTTGTGTTGATGCATTCTTACCGGCCTGACATTTTTCGGCCGGTACGTCATTTGTCCGGCAAATTCACAAAAGGAAAGTATGATGTCCAAGTTCTGGATCGTGTGTTTGATGTTGTGTTCGTTCGGTGCTGTTGCCGCGGGGAGTAGTAAGGAGGCCAAGGTGACGGAGTTGATGAATCTGATGGATATGGATGCGTTGATCGATAACATGTATGTGCAGATGGAGCCGATGCTTAAGAACGTCAGCAAACAGCTGGATATTCAACCTTCTGAGCAGCCGTTGTTTGATCAATACTATAACGATGTTCTGACGATCATGAAGACAGATTTCAGTTGGGAAAAAATGCAGCCAGGGTTTATGGATATTTACCTTCGTGAATTTTCCGAGCAGGAAATCGATGACCTGCTGGCGTTTTATAGCACCGAGACCGGGCAGGCGGTATTGAAAAAAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3735582-3734353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007142.1 Gynuella sunshinyii YC6258 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3735581 28 100.0 32 ............................ TTGTTTACCTGAAGGCCGTTTTTAATAAGCTC 3735521 28 100.0 32 ............................ TGCTGTAGTCTGCCTGCCCGTTCAATCAACAT 3735461 28 100.0 32 ............................ TAAGGCATTGTTGGTAATGCGTAACAAACCTT 3735401 28 100.0 33 ............................ AGGTGTTTGATGCCGCTATCAACCACGGTATGT 3735340 28 100.0 32 ............................ TTTTGAGGGCCTTCGCAATTTGGCTTATAACC 3735280 28 100.0 32 ............................ AAGGACTCAGCGTGTTGCTGCTGGAACCGGGG 3735220 28 100.0 32 ............................ TAAGTGTGAGCTCACATGCCCACGCTGGAGCG 3735160 28 100.0 32 ............................ ATTATCGAGACGCACCGCAAGCCCCGATTCAA 3735100 28 100.0 33 ............................ ATCATGGTTATTTAAAGCGCTGGGAATCACGTT 3735039 28 100.0 32 ............................ ATACATGATTTGGGTAGAGGCTGCGCATTTCA 3734979 28 100.0 32 ............................ ACCCAGAATCGCTTTACTCTGAGTCTTCTCAC 3734919 28 100.0 32 ............................ AAAATATTTTGGTAACAGATTTAATGACATCA 3734859 28 100.0 32 ............................ AGTTAAATTTTGCATAGTATCATTCTGATAAG 3734799 28 100.0 32 ............................ GGTGCATTCATGTCCACACCTGGCCCGGTGTA 3734739 28 100.0 31 ............................ AAAAAATGGCCTTCATGGCCACCGGTATGTC 3734680 28 100.0 32 ............................ AAGTCAAACCCTATTCCTAACTCATCAAATAT 3734620 28 100.0 32 ............................ GCTTCCAGCTTCATCTGTTCGATGCGTTGTTT 3734560 28 100.0 32 ............................ ACCGCCGCAACAAGTGCATTGATGATGTAACT 3734500 28 100.0 32 ............................ CGAACACACTACAGCGTGTTTTAGAATGTCGA 3734440 28 100.0 32 ............................ GCACGAAGTGCTTGTGCAGCGTCAGCTTGAGA 3734380 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTAAGTTCTCTGTACGGTGGAAACAAAGGAATCGGTATTGGTGTCGCCATAATGGTTTATGAGCCAGAATCTGAGATCGGGCTAGTGTAACTGCTTCACCTCACTATGTCCAATAATAAAGATTATTGGACATAGTGAGATATCAAAGACTTCTCTCTTTTTATCTCTAATCTTAATTCGTCTGGACTGGGTTTATCTGATGCCGATTGGCTTGCAGGAATTTTAAAGCGGGTTTTATCAGCAGGGCTTCCTGCTTGCATCGAAAGCTGGATTTCACTGATAACACACGTTATCTCTGACGGTTAATCACCAGACTCGTGCTTTTGGATGAATGAGCCATTTTCTCAACGGTGGCATGATTCAAAATAACCAATGTTTGGAATGTTCTCGCCGGAGCCCCATTTCATGCGGCTTTTGGGGAGGTAGAAAAAACATTGGTTTTTTGGCTGAAAAGCCTGAAATTCTTTAAAAATCAGACAGTTAGACTGAAATTGCTTCA # Right flank : ATCGAAAATCAAAGGGAGGCAAATGGCCTCCCTTTTTTTATGTGTGCAATACAGTATCCACGCTGATTCTGGTCGCTTTTAAGGTTTTCTAACTACCTGTTGTGCCATTTTTTAAACCAGTCGTCAGGCCAGATTCCATAAAGGTTTTGCTGTTTTTGGGAATACGACCTGTGCAAGGTTGTACAATGACTCTGCATTCTGTGCAATTGCGCTCCCCTGCTCTGAACCGCTCTTTCCACGCATTGACCTCTTCAGGTCCGATACAATCTGGCGTGTCCACAAACCGAAATCGAAACCATATTGTCGGGGGTCTCCCCTGACAGTCCATCGTTTGACCTCGGACTCTTCTGGCTCAGATAACTCCCTATGTCGTCCTGAACGTGTTTTAGGAGCCAAGGCTTCCACTCCTTTCTCTCTCGCTATCTTGAGCCAGGAAAAATGGTACTGATTATTTCTGCCCCATTAGTAAGTTTATCCAGTCCTTTGTTTGCCAACGCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4645753-4644224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007142.1 Gynuella sunshinyii YC6258 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4645752 28 100.0 32 ............................ TTATAGATTTCCTTGCGCGTGGCAATCGCTTT 4645692 28 100.0 32 ............................ AATAGAAATCATAACGATTCTGACGGGACCAC 4645632 28 100.0 32 ............................ ATCATGGAAAATGGTACAAGGTAGATGAAGAT 4645572 28 100.0 32 ............................ AAACCACTTTGTTGATATTCGGATCCCACACG 4645512 28 100.0 32 ............................ ATTTGTTCTCTGCCCAGTCCCAGGCATTCGAA 4645452 28 96.4 32 ........T................... CGGAGAAGGGTCAGTTGATCCAGTCCCTACAG 4645392 28 100.0 32 ............................ AACGGGCGATAATCTGCAATAGTGACGGTTTT 4645332 28 100.0 32 ............................ CTACGCTGATCACGAGTATCTTTGGTTCATAC 4645272 28 100.0 32 ............................ CAATGGATATAACATTATGAAAAGAAATAGTT 4645212 28 100.0 32 ............................ AAAATTGCGATGTGGGTTCGATTACTTGAATA 4645152 28 100.0 32 ............................ TGACTCTCGAGACGCTGTAGGCCGTGCATGGC 4645092 28 100.0 32 ............................ GCAACATTCTGATGATTGCGGAATCTGGTAAT 4645032 28 100.0 32 ............................ AAACGGGGATTTGACCCCGGTCGAGATGGTAA 4644972 28 100.0 32 ............................ TCAAACGAGGGGTCATTGGGTCCATAGGATTC 4644912 28 100.0 32 ............................ ACAAAGACCAGTCATCAACGCTCGCACACAAC 4644852 28 100.0 32 ............................ AGCAACAGCGAGATCAAGAACACTTAAAAATG 4644792 28 100.0 32 ............................ ACTTCCAGTACGGAGCGCGCCGCGTCCGGAAT 4644732 28 100.0 32 ............................ GCCCAGGGCCGCCACCAGCTCCAAAAATTTAA 4644672 28 100.0 32 ............................ GATACTGATAACTCTGCGTCACACGCCAGTCC 4644612 28 100.0 32 ............................ TGATGAGGTTGAAGGCAAGTTTTTAGAGAAGC 4644552 28 100.0 32 ............................ TATCACGTAAAGATGACAACCATTCCATAAAC 4644492 28 100.0 32 ............................ GAATCTGGCGCAATATGGTGTAAACCGTTACC 4644432 28 100.0 32 ............................ TCAAGGATGGCTTAAATGTTCTCAGGAAAGCC 4644372 28 100.0 32 ............................ AAGTCTCAGCGGCGAGTAACTCGCTAATGTCA 4644312 28 100.0 32 ............................ AATGAAGGAAGTCTCAGTTTTGCCGATGAGCT 4644252 28 85.7 0 ..........A..........CC.A... | C [4644229] ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGCGGCCCCGGACATATCGTGATGTCATCCAAAAACACCGTAATCGCCTGGGGCTCACTATCGTTAGCCGGGTAAGACACCCCCGCCGGCGGTCACAATGACCGCTGACCTGCCGGTACCTCAGTATCGAAAATGCCCTTGCACCATTCCAAACCACCGCATACTGCACGGATCAGCGAGTTTGAGGAATCATAAAACCCGCTGACAACCATAAGCACTTGCAACCGGGTCGCAATCGCAGTAAAAAAGCAAAACCCTGAGACAACCGCGTCATCCCGGCTGTTTATGATGGCCAGGCATAACACCCGACATCGCATCAGACCGAGGTAACGCCGACACAGGGAAAACCAAAGATTGATACCAAACATACCAATCTTTTTGGCTCCTTAAAAAATTGTTTGAAAATCAATAAGTTACAACCCGGCCCAAAAACATTGGTCAAACCGTTGTTTTTTCGCTAAGTGATTGTTGTGACTTATTTTTTTGCGTTTATGTTTCA # Right flank : ACATAAACGCATATCCCTCACGCTCATAAATCACTACCACACAACCCTCCAAAAAACAGAAAGGTTTTCTGCATAATAATTTCAGTTGTTATGGCAACTATTATTTGCACAGAAAAAACCGGCTGTTTGCTTTGCTGGCGATAGTCAGCATGGCTATTGGTTTGGTTGTCAATAAAAGCCCGGATTTGTTCCGGGCTTTTTTGTTTGTGGGGGTTAATTTTCCGGCAGTGCGAGCAGTGAGCGGCACAGGCTGAGGATGAGGGTTTGGCCGATCAGGGCTTCTTCGTCCATGCCGTTGAAGGAGGGATGGTCGTAGAGGCCGAGTTGGGCCTGCATAAACGTGAGTATGGCGCTGACCTGGCTGCAGGCGTCGCGGCGTGTGTAGGCCAGACCAAAGGCTCTGAAATCCGGCAGGTGATGGGTTTGTCCGTGTTCGTCGCGAACGCTCAGGCAGCGGTGACACAGTAGTTCTTTCGTTTGGGCTTCGGATAATTGAATAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 5368030-5365660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007142.1 Gynuella sunshinyii YC6258 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5368029 28 100.0 32 ............................ GTCATCGGACCCATCCCCTGGACCATCACCTG 5367969 28 100.0 32 ............................ TGTTGCACCATCATCAGTAACACACTGGCGAC 5367909 28 100.0 32 ............................ CGTTGGTAGATTTTTAAAGTTATTAACAAGCA 5367849 28 100.0 32 ............................ GGTAATTGAGATTTTTCCTATAGCCTGGCCGT 5367789 28 100.0 32 ............................ GTCATAAAGCTGTTTAAGTGTGTCAATACCCA 5367729 28 100.0 32 ............................ TTCTGACTTCGAATATAGCCTTGTGACCCACT 5367669 28 100.0 32 ............................ TATTTGCGAGACCGGGTCCATAACGCTTGGAA 5367609 28 100.0 32 ............................ AAATGAGAAATGACAATGGAAAAAGTTTTGGA 5367549 28 100.0 32 ............................ AGAAGGATCATTTGACAAAGCGGGAAGATTTT 5367489 28 100.0 32 ............................ TGAGTAGATGTTATCAAATCTCATCACGCAAC 5367429 28 100.0 32 ............................ TCAAGGATAACGCCGAGGTCGGCTTCGGCTAG 5367369 28 100.0 32 ............................ GGGGCGAAGTGTACCCCGGCGCAGAAGCATAC 5367309 28 100.0 32 ............................ TGTAACACCTCCCACAAATGATGGACTGCTCA 5367249 28 100.0 32 ............................ CCTCTGCGCCACTCGGTTTCGGCGGAGGAGTG 5367189 28 100.0 32 ............................ GGACATAGTCTGGCTCGAACAGTTTGATAAAC 5367129 28 100.0 32 ............................ GGATCAACTTCACCGTATCGGGCGGAGCGATG 5367069 28 100.0 32 ............................ GAAGCGTTCGAGCTGGCGCAATACCTGCTCGA 5367009 28 100.0 33 ............................ ACCTCGCTCACGCGCGATCTTTCTACGATACGT 5366948 28 100.0 32 ............................ TCTAGACAGAGCTCTTCGGATTGGTCGTATAC 5366888 28 100.0 32 ............................ TGGGTGTTCGGGTCACCCACGAAATCTGTAAC 5366828 28 100.0 32 ............................ GTCTTGAGAGAGATTGTTGGCGGACTGAACCC 5366768 28 100.0 32 ............................ CCCGGCATCAATGACCTTGGACGATGCGAACC 5366708 28 100.0 33 ............................ GTTCTGTCGAACGTAATCGGGCTCGAACAGTTT 5366647 28 100.0 32 ............................ TGAGGGGTCGCACAGGGAGCTGATCTCAACAG 5366587 28 100.0 32 ............................ TCGGGTCGAGGTTGTAAGTCCCACCCAGATGC 5366527 28 100.0 32 ............................ AGGCAGTGATCAGCAGCGGCTACGCGCAACAG 5366467 28 100.0 32 ............................ ATAACCGGCGCTGGTCGCGCTGTGTTGCTTGA 5366407 28 100.0 33 ............................ CGCATCGGGGTGCCCTTTGTTCTCATGTCACGC 5366346 28 100.0 32 ............................ ATGCAGTAATCAACATACTCGCTCAGATCACC 5366286 28 100.0 32 ............................ TTGATGGAACCAGGGTAATGCTTGAATTAAAG 5366226 28 100.0 32 ............................ ATTCCGGCGGCTTTGCAATCAACTCTTTTGGA 5366166 28 100.0 32 ............................ TTGTGGTCAGGGTTCGAACACATTCCAACAAT 5366106 28 100.0 32 ............................ GCGAAAGCATCCCGTATTTCGGCGTTAGTCGC 5366046 28 100.0 32 ............................ TCGAACTCGACAGCAACGGGTATCTGCCATAT 5365986 28 100.0 32 ............................ CGCTTCAAGTGCAGTAGCTTCAGCTAAGTCAG 5365926 28 100.0 32 ............................ ATCAGCTTGATTATCTGTTGAGTCACACGCAC 5365866 28 100.0 32 ............................ ATGCATGTGACATGAGGACTGTTGCGAGTTTC 5365806 28 100.0 32 ............................ TGCCAAGGGTTGAGCGCTTTTCCTGAAAGTAA 5365746 28 92.9 32 .....................A..A... AAGTAGAAACTTGCGTTCAGGTTTTGTTAGAC 5365686 27 71.4 0 .......T..C.G..AA...-.C..G.. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAATATCCGGAAGAATCGTCAACGCTGTTAAAGTTGCCCTATGCTCAATTTCAAAGCATGTCCAGCAAATCAATGATGAGAGTATTTGTTGAACATGGCCCCCTGATAGAGCAGCCAGTCAATGGCGTGTTTTCAAGTTATGGCCTGAGCCAGACCGCCACCATCCCGTGGTTTACAGATAGTTAACATACAACCTGAAACACCCATTAAAAATAGCTGATTGAAACAAGACAGCCTATTAAAAAGCAGACATGGCACCACCTATGTCTGCTTTTTTTTGTTCCAAAAACACCACACAAAAACAGCCATATTAACGATGGCAACCACCCCAAAACTGCAATACCATAAAGCCCGGAATTGGATGAAAATACCAATCTTTTTGGCTCCTTAAAAAACTGCTTGAAAATCAACAACTTACAAAACCGCTAAAAAACATTGGTTAAAACCCCAAATGTTGCCTAAGTGGTTGTTGTAATTGGTTTTTTGAAGTTTATACTTCA # Right flank : GTTGTCTGGTTCATAATTGGTTTTTGTGTTGCCATGCTAATAATTATGATCCAAAAAAACTCACGGTTGTTCTGTTGGATTGTCAGGTTGTTTCAGCGGTATGTTGATAAACCTCAATGCTTTGTATAAAGCCCGGATTTATTCCGGGCTTTTTTGTTTATGGGGTTAACTTTCCGGCAGTGCGAGCAGTGATCGGCACAGGCTGAGGATGAGGGTTTGGCCGATGAGGGCTTCTTCGTCCATGCCGTTGAAGGAGGGGTGGTCGTAGAGGCCGAACTGGGCTTGCATGAATGTGAGTATGGCGCTGACCTGGCTGCAGGCGTCGCGGCGGGTGTGGGCCAGACCAAAGGCTCTGAAATCCGGCAGGTGATGGATTTGTCCGTGTTCGTCACGTACGCTCAGGCAGCGATGACACAGCAGTTCTTTCGTTTGGGCTTCGGATAATTGTATAGATGACATGAAATTTTCCGTGAACATTGTAGAAAACAATGCCCCTCAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //