Array 1 1102-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEH01000110.1 Gordonia effusa NBRC 100432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1101 28 100.0 33 ............................ CAGCGGAGGCATCCGCCAAGGGTGCCAACATGG 1040 28 100.0 33 ............................ CCCCAACCCGGTAGCCATACCGCCCGAGTCATA 979 28 100.0 33 ............................ CCATCAAGAGCTGGCGATCCTGTGTCGAGACGG 918 28 100.0 33 ............................ CAGCCTCTCGCGGTGGTGCGGTGCGCCGACGTC 857 28 100.0 33 ............................ CAGCAGTTGGTCGAAGGCGGACAGCTACGAAAT 796 28 100.0 33 ............................ CGTTCCATGCCTCGGCGCCCGCGACGAGTGAGA 735 28 100.0 33 ............................ CCTCGTCGAGTACCGCCGCTGCGTGCCGCAGTT 674 28 100.0 33 ............................ CCGCAGCCTGGGCAGTGATGGCCGCTCATGATG 613 28 100.0 33 ............................ CGACGTCGCCAAGAAATCCCGCGGACAGCCCCG 552 28 100.0 33 ............................ GAGCGGAGGAATGAGCGGCAGGGGGGCGTCAGT 491 28 100.0 33 ............................ CATCATCCAACTCTAACGCCCGATTCAACCGCT 430 28 100.0 34 ............................ CCGACCACACCGACCCCGGCCCAAATTTCCCCTA 368 28 100.0 33 ............................ CAGGCCAGCGCTCAGGGTTGGGTCCATGCAGGT 307 28 100.0 33 ............................ CACCTTCGCGATGTACTCGTCGGGCACGTCGTC 246 28 100.0 33 ............................ TCGCGTCGGTGTCATGGGATGCTCGCCTGGTTT 185 28 100.0 33 ............................ CCATTCGTGATCTGCAAATCGTGTCACACGAAG 124 28 100.0 34 ............................ GTGTCAGAGCAAGCCGACGAAGATCGCCGAATCG 62 28 100.0 0 ............................ | C [53] ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 33 GTCTGCCCCGCGCGAGCGGGGATGTTCC # Left flank : TGATTCGACCGTCGGTGACGAGTTGCCCGACGCAGACGTGATCGAGCTTTGGGATGAGTCAGGATCGGCAGTCGCCAGCGGCACGAACTACGAGGATGAGGTCCCGTGGTAGTCATCGTTTTGACGGCGTGTCCGGCAAAGCTGCGGGGGCATTTGACGCGGTGGCTTCTTGAGGTAAGCCCCGGTGTCTACGTCGGGCACATTCCGGCCCGGGTACGTGATCTGCTGTGGCTACAGGTAGTCGAGTTGGTCAAGGACGGCAAGGCGATCATGATTCACAGCACTCAAGGCGAACAGCGATTGGCCTTCCGCACGCATCGGCACGAGTGGGAGCCAGTCGACTTCGATGGCATCATGCTGATGCGACGTCCGAGCAACAATGCGGTGACGCGGGACCGAGTTCGCAGCGGATGGAGCAATGCGTCGAAGATGCGACGCGCGCGGCGGCGAAAGTAGTTCCAGAACGCGAATACGCTCGCTAACATTCCTGGTCAGTTAGT # Right flank : CCCATGGCGGCGATCTTCAACTGTTGGAGAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8-1008 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEH01000082.1 Gordonia effusa NBRC 100432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 ............................ CACGTCATAGGTATCTTCGACCTGGTTACCTGC 69 28 100.0 33 ............................ CGCCGCTCAATGCCTGTTGCCGGCGGCGGGCTC 130 28 100.0 33 ............................ CGCGACGACAAAGCGTGGTTTGACACCCCGGTG 191 28 100.0 33 ............................ CTGCACGTGAACGAGCCGAGCAGCAGGGTTGAC 252 28 100.0 33 ............................ CTGCACGTGAACGAGCCGAGCAGCAGGGTTGAC 313 28 100.0 33 ............................ CTTCCGTGCGATTGCGCAGAAGTTCCGTGCGTG 374 28 100.0 33 ............................ CGCGGATGGGTCTAGACACTTCCCGCCTCGTCT 435 28 100.0 33 ............................ CTTTTCCGGCAACCCGTGCGCGCCCAGCTCAGC 496 28 100.0 33 ............................ CGGCGGCAAAGGCACAAACGCCGCCACCGCGTT 557 28 96.4 33 ...C........................ CGCCGTCGCACCCGGCCTCGGCCTTGGCTTCGT 618 28 96.4 33 ...C........................ CCTACCGTGCGGTTGCGGCGTCGGCCGTGGTGG 679 28 92.9 33 ...GT....................... GGGGGAGTAGGTATCCGCAGAGGGCGCGGTCTT 740 27 92.9 33 ...G................-....... CGGTAGGCGAGGAAAGGAACTCCCTCGCGAAAC 800 28 96.4 33 ...C........................ GGTGAACGGTGAGAGGGTTCGGCTCGACCAACG 861 28 92.9 33 .................A..A....... CATCACCGACGTCGGGGCCTCGATCGCCGCCGC 922 28 96.4 30 ...C........................ GTAGGACACGTTGTCGGACAGTCCTAGGTA 980 28 92.9 0 ..G...T..................... | G [982] ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.5 33 GTCTGCCCCGCGCGAGCGGGGATGTTCC # Left flank : AAGCCCGG # Right flank : CCCGGCGACAACTCGCTTACGAAGAGGCTCTGTCTGCGTGTCGTGCCACGCGTGGATGCTGGTTCTCGGCCCAAGATCCGACCAATCGAGCATCTGATGCCGAAGCCAGACGACTAAAATCCCTTGGTCTTCGCGGCCGTCCCACGAGAAGTCCCAGCCGACTTCTTGACGCTCCGCCCGCGAGGCGCCGCGACCTTATTCGCTGGCACTCCCCTAGCCGCGGACGGAACCTTTTGGGCAATGGGCGTACCGGCCGGGGATGACTTCCGCGAAGGCCTCCCGCCCGTCAACTGCGAGATTCGCTGAGCCGAAACACCCATAAGTGACCCGACATCACGAAGTGAGAAGCCTTGATGACGGAGGCTATTAGCCACGTGCCGCGAGCGTGACGCGACCTCACGCTGCAAGCGGTCGAGCTGGGCAATCTGACCGCGAACTTCCTTCAACGCGGATTGATCGTCTTCGTGGATGACCGGCTGCACGTCGACCTCATCAACGAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGATGTTCC # Alternate repeat : GTCCGCCCCGCGCGAGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-823 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEH01000126.1 Gordonia effusa NBRC 100432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1 28 100.0 33 ............................ CACCTCGCCGACGGCGACATGCACTTCGCGACG 62 28 100.0 34 ............................ CCTTTCGCCGGATCGCGTGGCGGTCCTGCTGTCC 124 28 100.0 33 ............................ TCGTCTTGGTGTCGACTTCGCCGACGATACGAC 185 28 100.0 33 ............................ CGATGTGATCAATTCGGCTGTGTCATTCGATGT 246 28 100.0 33 ............................ CCTGGAGCTGTTTAACGGGCTCTCGCGGATGAA 307 28 100.0 33 ............................ CTGCGGTAGGTGGTATGGACTCGTTGGTCGAAC 368 28 96.4 33 ......................C..... CAGTAGGGAGGTGAGCACTACAGCTGTGAGTGC 429 28 100.0 33 ............................ TTAATCTCCTGCATCACAACGCCTTTCGCCTGT 490 28 100.0 33 ............................ TTAATCTCCTGCATCACAACACCTTTCGCCTGT 551 27 96.4 34 .................-.......... TGCCACGCTCAGCAGTACTACGCCCACTTCCCGG 612 28 89.3 33 TCG......................... CCACAGTCGGGTCCCGACCGGGGCGACGTGTAT 673 28 100.0 33 ............................ CCTGACCCCGGCTACGACATGTAACCGGGGCCA 734 28 92.9 34 ........................G.T. CCTCGTGCTGGTGGTGGGTGGGAGCTATCGCAAC 796 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 98.2 33 GTCTGCCCCGCGCGAGCGGGGATGTTCC # Left flank : | # Right flank : CCGCGGGCGTCGGCTGAACCTGCCGGCCACCTAGTCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1538-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEH01000123.1 Gordonia effusa NBRC 100432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1537 28 100.0 33 ............................ CGACGATTGCCCCTGGTATTGGCGCACGCTTGA 1476 28 100.0 33 ............................ CTACCTCGTATGGCTTCCCGAGTCCACTAAGGG 1415 28 100.0 33 ............................ CCCGTCCGGCACAACGACCTCGTCATCGTCGAG 1354 28 100.0 33 ............................ TTGAAATCTTAGTAGATCTGCGACACGCCGACA 1293 28 100.0 33 ............................ TTCGAACCTATCAGCCACACATATGGCGTAGCA 1232 28 100.0 33 ............................ CTGAAACCTGGAATACGGTCTGCGCGCGTGAAC G [1218] 1170 28 100.0 33 ............................ TAGTGGTGTGTTGAGGTCATCGTCGAACTGTTC 1109 28 100.0 33 ............................ CATTCGGCCTCCGGCGGGCGTTGAGGTCGGAGA 1048 28 100.0 33 ............................ TCAGACGGCGCGATCCTCGTGTGGGCGTTCGAC 987 28 100.0 33 ............................ CTCGACGACCCATACGCAGCGGTTCACCGAAGC 926 28 100.0 33 ............................ CAACCCCAGCGCCGTGCTCACTGGGCCGGTTAC 865 28 100.0 33 ............................ CGGTGTGGGGAAAGATTCGGCGACAGAAATTGT 804 28 100.0 33 ............................ CACAGACGGAACGCCGGGAAGCGTTGTCGTGGA 743 28 100.0 33 ............................ CATTAGGTTTGCGGGCTTGTCGCGGTACTGGCG 682 28 100.0 33 ............................ CTGCGACTTCGACACCAGGCGCTCGGCCTGAAT 621 28 100.0 34 ............................ CAAGTAGTCACAGCCGGTCTGCTCAAACAACACC 559 28 96.4 33 ....C....................... CGACCGGACGGTAGGCGAATGGCAGCGCGGGCA 498 28 100.0 33 ............................ CTGGCTGTGGTGTCCGTTGTGGTGGACCTGGCC 437 28 100.0 33 ............................ CTCAACCAGTCCGGCATCGGCAATCATGTGTGA 376 28 100.0 33 ............................ CGGATTTCGGTGACCGCATCCGGCGGCGTCGTT 315 28 100.0 33 ............................ CGTCCGCCATCATCGGGTGAGGCACGATGAATA 254 28 100.0 34 ............................ GTCGGCCTCGTCTGGATCGACCACTGAGCGAGTG 192 28 100.0 33 ............................ CTCGCGCGTGTTGTCACGCGTGACAGACGGTGT 131 28 100.0 33 ............................ CGGTCCAGACTGTGGCGTCCATGCCATCAACCA 70 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 99.9 33 GTCTGCCCCGCGCGAGCGGGGATGTTCC # Left flank : CCCGCGCGAGCGGGGATGTTCCCGTGTGGTCGTGCCTCTCGGGCTGGGAGGTAT # Right flank : CGTCGCCGCCGCGGTGGCCTTCATTGCCGTGGAGTCTGCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //