Array 1 1042-406 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLU01000071.1 Klebsiella pneumoniae strain KP115_C NODE_71_length_12789_cov_39.961920_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1041 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 980 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 919 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 858 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 797 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 736 28 89.7 32 .....-......TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 676 28 93.1 32 .....-......T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 616 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 555 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 494 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 433 28 93.1 0 .......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34326-31293 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLU01000016.1 Klebsiella pneumoniae strain KP115_C NODE_16_length_104671_cov_10.231691_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34325 29 100.0 32 ............................. ACAGAAACCAGCAGCGCTATAACCTTGAGGGG 34264 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 34203 29 100.0 32 ............................. ACCCAGCAGCGTCTGCAGGACTTCGCGGGGAT 34142 29 100.0 32 ............................. GCTCGCAAGTTACATCGCTGCTGTGAGTGTCA 34081 29 100.0 32 ............................. GTTTCGCACTCGCCGTTCTGACTGCTGCGCCA 34020 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 33959 29 100.0 32 ............................. TCATAGCCGCCGCCCATGCAACGCGCTATCAG 33898 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 33837 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 33776 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 33715 29 100.0 0 ............................. - Deletion [33687] 33686 18 48.3 32 -----------CTG.A............. TATCGCATCCGTGAACTGCCGGTGCTCCAGAA 33636 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 33575 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 33514 29 100.0 32 ............................. AAACGATAAGGCGTCGGTTACGTGAGTTTTGA 33453 29 100.0 32 ............................. CGCCGATCGTGTTCAGTAGCAACGGGTATGCC 33392 29 96.6 32 ............................T TCGCTGTATTCACTCACCAGCTGGCTGCGCGG 33331 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 33270 29 100.0 32 ............................. GCTCAAATCACAGACGAACGTTTGGCAAAAAT 33209 29 100.0 32 ............................. TTTTACATCTCCCCCAGGAGACCTTGGGGGAA 33148 29 100.0 32 ............................. GCGAGCTAATGCCATACCGCTGTTGTAACGAT 33087 29 100.0 32 ............................. GACCAGAAAGCGTGGGCGCTTTTCCGCTCGTT 33026 29 100.0 32 ............................. CCCGCCGGGATGGATTTAACCCCGCTCTTTTC 32965 29 96.6 32 ............................A CACTGGCAACCCACACAGAGCGGGTGCCTCCC 32904 29 100.0 32 ............................. GCTGATTTAATTGAGTCGTGGACGCCCCCTGA 32843 29 100.0 32 ............................. GTGTATAGCGAAGTGAAGCAAAAAATGGTTAA 32782 29 100.0 32 ............................. CAATCGTAATTTCCAGTCAAGGCGGCTTTACG 32721 29 100.0 32 ............................. CGGGGATCGAGGATTTCCGTTTTCACGACCTC 32660 29 100.0 32 ............................. GCTACGGTCAGCGCAGGTGATGGCTACCCAGT 32599 29 100.0 32 ............................. TGGAGTCTGGTGCATTTGACGGCGCGGTATTA 32538 29 100.0 32 ............................. ATCTTCGTCATTGCGATACATACTCACTGCCT 32477 29 100.0 32 ............................. CCAGCGGATATGCTCCACGACATGATCAGCGC 32416 29 100.0 32 ............................. TAAAATCGATACTTCATTCGCTGCCAATAAGC 32355 29 100.0 32 ............................. CCATCAATTTCCGACGTTTTATAACGTCCCTG 32294 29 100.0 32 ............................. ACCAGATAGAGATCCACATTGAGATTAACCCG 32233 29 96.6 32 ............................A CGCGGAACCGTAATTCATGCATAAAATTTTTC 32172 29 100.0 32 ............................. GGAATGGGAGACTGGCGTTTCATGATTAGTGA 32111 29 100.0 32 ............................. CGCCCACGCTTTCTGGTCCATCACAGCGATAT 32050 29 100.0 32 ............................. TTGCGCTCGGCGGCGCTGTTTCAACCGCCAGA 31989 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 31928 29 100.0 32 ............................. AACTCTGGCCCCTGGCGCGGCGCCAGGATATC 31867 29 100.0 32 ............................. CAGCCAGCCATCTGCCGTTGAGTCGATGCTGG 31806 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 31745 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 31684 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 31623 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 31562 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 31501 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 31440 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 31379 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 31321 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCTGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //