Array 1 4515-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYMI01000019.1 Xanthomonas nasturtii strain WHRI 8853 scf_22201_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4514 28 100.0 32 ............................ GGACACTCACTTCGACGTGATCGATGGCACCC 4454 28 100.0 32 ............................ AAGGATCTTCAATGTTTCCTCGCAACCTCACG 4394 28 100.0 32 ............................ GGTAAGCACCGGTACTGGCAGATGATTATCAT 4334 28 100.0 32 ............................ GGCATACGGAACCATCGGCACGCTGCCTAACC 4274 28 100.0 32 ............................ ACGTCGGCTACAGCTACCGCTACGACCTCGGG 4214 28 100.0 32 ............................ TCACGCTGATTGCGAAGCCGCTTGCAGGGCGC 4154 28 100.0 32 ............................ GCTACCAGCGTCGTTGATAGTGACGTACCTCA 4094 28 100.0 32 ............................ ATCGGCGTTCGGTTGCGGATGTACCGGTCAAC 4034 28 100.0 32 ............................ ACAAAGCAGCTGGTCGGCGCTCATCACCAAAT 3974 28 100.0 32 ............................ ACCTTGGCATTCAAACGTAGCTTGGCCTCAAC 3914 28 100.0 32 ............................ TCCGGCAAAGTTCACCGGGTCCAGATACTTGG 3854 28 100.0 32 ............................ ACCAGCCCATCCGTAAATCTCGGCGGTCATTG 3794 28 100.0 32 ............................ ATATGGTCGCCCATGAAAAAGGCCCGCACATG 3734 28 100.0 32 ............................ GGAACCGGTGCGACGGTGACGTCGCCTTTCAC 3674 28 100.0 32 ............................ GCTGCGCCCCATCCATTCCCGTCATAGACCCA 3614 28 100.0 32 ............................ ACGTAGGCCAGCTGCCGCTCGTCCAGTTCGCC 3554 28 100.0 32 ............................ GCTATAGGTATCCGCGTCGATGAAATTGACAG 3494 28 100.0 32 ............................ AGCTTGGTCCATCGTGCCGCACCGGCTGCCGC 3434 28 100.0 32 ............................ AATGATCGATTGCGCCGTGCAGCGTCCCATCA 3374 28 100.0 32 ............................ TGCAAATGTTATGCATGTCGGGATGCAGCTCT 3314 28 100.0 32 ............................ AGATATGCGTCCTGCTCGTAATTGAACTGGTC 3254 28 100.0 32 ............................ GCCTCGGCGTTCCGATTAAAGGAACTGTTACC 3194 28 100.0 32 ............................ TGATCAACCACGGCAAGTACAGCGCCGTGCGT 3134 28 100.0 32 ............................ TGCCTGCTGACCTGAGGAACAACTGATGCGCA 3074 28 100.0 32 ............................ TTGGCCACATTCGACAACGTACATCGCGAACT 3014 28 100.0 32 ............................ AAATAATTGAGTTGGCCGTCGGCCTCGCGCGT 2954 28 100.0 32 ............................ TTGGATAGCTCGGCCTTGCCTTCAGGATCGGT 2894 28 100.0 32 ............................ CACTGCAACGCCAGCAACGCAGCCAACCGCTG 2834 28 100.0 32 ............................ ATCAAGCACCTCGCCGAGTGCGCCGAACTGGC 2774 28 100.0 32 ............................ TGATGCCACTGCCCGGCAAGACCCGCGAGACG 2714 28 100.0 32 ............................ GACAACGTACTGCACGCGCTCGCCACCACCAG 2654 28 100.0 32 ............................ TTGAGGCCGTTGGTCATGCGATTAAAGCCAGA 2594 28 100.0 32 ............................ ATGCGAGGTGGGCAGCCTCAATACCGGAAAAC 2534 28 100.0 32 ............................ GGCAGCGTCTGCGCAGCTTTCTTGACCAGCGC 2474 28 100.0 32 ............................ GCCTGCAAGGCCTCCGGCAACGCCTTGCCCCG 2414 28 100.0 32 ............................ AGTTGCTTTTGCGCAGAATCAGCGCGATGAGG 2354 28 100.0 32 ............................ TACCTCGGCGGCGGCGCCACCGAATCCGCAGC 2294 28 100.0 32 ............................ AAGCAGATCGAAGGGTACGAGCGCGAGTGGCG 2234 28 100.0 32 ............................ ATGAGCGAGCCGGCAGTGATTGGCCGGCAAGT 2174 28 100.0 32 ............................ GTGCTCGGCGCCGAACGCGCCCATCAGCTCCT 2114 28 100.0 32 ............................ TCGGCGATGTGGCTGACATACGATTTCGAGTA 2054 28 100.0 32 ............................ ATCAAGCGCGCTGAACGTGGTCAAGGGGATGG 1994 28 100.0 32 ............................ CTACCCTCGTCGGTGACGCGGCCAAGCCAACG 1934 28 100.0 32 ............................ AATGCGCCTGCTGACAATGCCGCAATCACCAT 1874 28 100.0 32 ............................ AAGAAGCCGGCCGGCGCGGCGGTGGCCACCGC 1814 28 100.0 32 ............................ AACTTCTGAAGTATTGGGCCCTGTAATGGCAA 1754 28 100.0 32 ............................ ACGACGTGGGCCGCACCTGGATCGTACAGGGC 1694 28 100.0 33 ............................ TGGCGTTGCGGTCCAGCTGTAGTGCGCGGAAAT 1633 28 100.0 32 ............................ TTGCAGATCGACGACTTCCAGGAGCAGTTCAT 1573 28 100.0 32 ............................ ACCGCCCAATGTCGGTTACAAACCGCTTGAGA 1513 28 100.0 32 ............................ AACGCGAAAGAGACTACGGGGCAAAGCGTGGA 1453 28 100.0 32 ............................ CGGATGAGTACAGGCGGGCGCCGACGTGCCCC 1393 28 100.0 32 ............................ GGGATGGATAAACCGTCGAAACTGGACGTAAA 1333 28 100.0 32 ............................ AGGATCACGTGCCGTTATAACGTCATTTCGAA 1273 28 100.0 32 ............................ ACCGAGGACCACGAAACCCTGGCGACGCTGAA 1213 28 100.0 32 ............................ ACAATGATCCCCATCCCGGTCCCCAGCATCAG 1153 28 100.0 32 ............................ TATGAAAGAGGTAGCCGCATGGATCTTCACCA 1093 28 100.0 32 ............................ AACTGCCTTCCAATTCGCCCCCGGCGGCTGCT 1033 28 100.0 32 ............................ AACTGCGCCGAGCGCACCGCGAGCGTGACGTT 973 28 100.0 32 ............................ CCTGGCCGCCGGCGTGCGCTTCTTCTTCTGGG 913 28 100.0 32 ............................ AATGCCGCAGTGCAGGTGACCAGCCAGGCCGT 853 28 100.0 32 ............................ TCTGCCGGCTGGGGGCGGGTGGCTCGTGCAGC 793 28 100.0 32 ............................ AGACGGATAACCCGCGCTATACTTATTCGATC 733 28 100.0 32 ............................ ACGGCCAAATCATTGGGGTCACGTCATCCGGC 673 28 100.0 32 ............................ CCTCCTTCGACCTTATCCCAATTGCAGGACTC 613 28 100.0 32 ............................ AGACGCTGCATTCTGCAATCAGACTGGTGCGG 553 28 100.0 33 ............................ GCCATCTTCGCCGAGCCGAAATTGATGCGGCTT 492 28 100.0 32 ............................ ATCACCGGCGTCATGACTGCGTTGACCGCGTT 432 28 100.0 32 ............................ TGGAGCAGCGGACCATTGTTGCGATCGATGAA 372 28 100.0 32 ............................ AACCCACGGGAGCCGCGCGGCATAGCTGGACA 312 28 100.0 33 ............................ ATGAACCGCGCCCACACCCCCCCCCCGCGCCGA 251 28 100.0 32 ............................ CGACAGGAGCAAGGCCAGCTGCTCTTCGTCGG 191 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 73 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CCTTGCAAGCGTTGATGGCGAGCGCCTGGCTACAGGGGATACACGATCACCTGACGGTATCGCCCATTGTCCGCGCTCCGGCCGGCAGCCAGCACCGTCAGGTCACCCGCGTGCAGGCCAAGAGCAGCCCCTCGCGCCTGCGTCGCCGCGCCATGCGGCGGCACGGGATCGATGCCGTGACAGCCGCCCAATGCATCCCGGACGCGGTAGCCGAACAGTTGTCACTTCCCTTCGTGGTACTGGGCAGTTGCAGCACCGGACAGGCATCGTTCCCACTGTTTATCCGCCATGGCCCCCTGCTATCTGAGCCCAAGAACGGCAGCTTCAACAGCTATGGTCTGAGCCAGGAAGCGACGGTGCCATGGTTCTGACCCTTTTTCCGGGGTAGAAAAAGGCGGCTTTAGAATCAAGCACTTGGCAAGCACCTCTCTCAAAGGGTGCCTGCCTTTGTTTTGGCACAATTCCTATATCTATCAATCATTTATTTAAATTACACCCTT # Right flank : AAACGAAGCATTGGAGCGCATCGAGGACTTGCTAGAGCCTGTTAACACTAATGATCTGAGCGGTTAAACTATTGCGCATGGAAATCACACCCGCACAATTTTCTCTCATCGAACAGTGTCTGCCGAGGCAGCGCGGCAATGTCGGCATGACCAACCTGCAAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 243-570 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYMI01000010.1 Xanthomonas nasturtii strain WHRI 8853 scf_22201_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 243 28 100.0 32 ............................ AGTCCGGAGGTGCAGTGATGCGAACGCGCGCA 303 28 100.0 32 ............................ ATCAGGCTGTCGTCGGACCTTCGGCAGCCCAG 363 28 100.0 32 ............................ CTGGGCGTAGAGCGGGTTAGGCGCAATGCCAT 423 28 100.0 32 ............................ GATGGAAACTGCACCGCGCGACGGCACCATGT 483 28 100.0 32 ............................ TGGCCGACCAGCTGCACGGTGCGTAGCACCCC 543 28 92.9 0 ............G.........G..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CGCGCCAACTAGCGCTTGATCTTGGCTACGTCCCGGTGGTCCCGCCAAAAGCCAATCGGGTCGAGCCCTGGGAGTACGACCGAGAAATGTACAAGCGGCGCAACGAAGTGGAGAGGCTGTTTCGTCGCTTGAAGGGCTACCGCCGGATTTTCTCGCGCTTCGAAAAACTGGATGTCATGTTCCTCGGATTCTTAAGCTTCATCCTTGTCGTTGATGAACTTCGGATGTGTTAACAGGCCCTAG # Right flank : AAACTAGCGAACCGAACTGTTGTTGAGGCGATCAATCTCTCCTGCGCATTACGCGCGCGCTCACTCGCGCCCGTAAAGCCCCAGAAACATCTCCACCGCCGATTCGACGACCTGCGCCTGCTGGGCGTCCGACAGTGGCGGCTGCCCCAACGCAAGCTGCGGCCAGAACGCAAATCCCTTGACCAGCGCCTGAAACTGCTGCGAGGCGAGGTCCGGGTCCACCGGCGCCAGGCGGCCATCGGCCGGCGCGGCACGCAGCCAGGTGGTGGTGCCCTCTTCCTTGCTGCCCAGTTGGGCCAGCAACGCGCGTGCGCGTTCGGGGGAATGGATGACTTCGGCAATCGCCACGCGCGACAGGTCGATGAAGGCCGCATCGTCGAGCAAGCGTAATTTTGCTGCAGCAATTGCGTCAACTGCGTGCGCAATCCTTGGTCGGTGCGATAGGCCAGGCTCACCACCTCGGCGCTGCGTTGCCACAAGCCGCGCAGGATCTCTCCAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //