Array 1 270336-271706 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUTK01000002.1 Escherichia coli strain GER_MD03_1505_Eco_006 EC-BIM006-6-VE-DEU-2015-033-PK_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270336 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 270397 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 270458 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 270519 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 270580 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 270641 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 270702 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 270763 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 270824 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 270885 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 270946 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 271007 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 271068 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 271129 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 271190 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 271251 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 271312 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 271373 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 271434 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 271495 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 271556 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 271617 29 93.1 32 .A.C......................... GACGCCGCCTCCGCGAAGCCGTTTCCGATGTT 271678 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 297406-298226 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUTK01000002.1 Escherichia coli strain GER_MD03_1505_Eco_006 EC-BIM006-6-VE-DEU-2015-033-PK_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 297406 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 297467 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 297528 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 297589 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 297650 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 297711 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 297772 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 297833 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 297894 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 297954 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 298015 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 298076 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 298137 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 298198 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //