Array 1 116169-116730 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAXA01000005.1 Geomicrobium sp. JCM 19038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 116169 32 100.0 34 ................................ ACTTATACTAACAACTCCCAAAATGAAGTTCGAC 116235 32 100.0 33 ................................ TGAATCTCAGCGATATAGTTATACTCGTATTCG 116300 32 100.0 33 ................................ GTCACAAATCCACGGGATGCTCAACATATCAGG 116365 32 100.0 36 ................................ ATCTTCGGGCAATTTTTGGTTACAAGTCGGGCAGTT 116433 32 100.0 33 ................................ GACTTGGTGGTGAGCGTCTCCGTAAGGTTCGCT 116498 32 100.0 36 ................................ TAGTTGTAACAGGTTTTGTGTTCAGTGAAGAACAAC 116566 32 100.0 35 ................................ TTAAATATATGTGGCGGTGGCAGCACAAGAACGGT 116633 32 100.0 34 ................................ TAATTGCGCCATAGAGCGATTCTCAGGTTACAGT 116699 32 96.9 0 ..................A............. | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.7 34 GTCGCACTCCGTGTGAGTGCGTGGATTGAAAT # Left flank : CAGTTTCATAACGACAGCGATATGAATTTTAAGTAAATAAAAAGTCTTGTTTCTAGTAAGCTGAGTTATGAGGAACCATCGTGTTCTCTTGAAACAACCCAGTGAGTTTCGTAGAAATATAAGAAAACGTTTTAGCTTCCATAATTTAGCGAATAATTAATAAGGACAATAAAATGTACTGGGAGAACCTTCCGTGAAAAAGCGTCATTACGTATTGGAATGACATGCCAATACAGACATTAGCAGATGAAAAGTAAATAACTTCGTTTAAATAAGAAAATTATTGTTTCCTGAGCATACTGCATTAGTATGCAATATAGAGGCAATAAGCGAGTGCGAATGTGAAGCGAACATAAAAAGCTAGGGGATCCGCACCAATAAAATTGAATATTATGATAAAATATGTAATAAAGTTAAAAGTTGTTTAATTGTTTCAGAGCTAATTCGAAGAAAAGCTTCATTTATACGCGAATTTTGCATAACTATACTTGAAATTCGCA # Right flank : TTTCATCGTCTTCTAATTAATGTTTGTTTGTACGATCCAGTGAACGTCATTTATAACGTTCGGTTCTCTTTCTGGATCTTCTGAATGAATTTTCGCTTCATGAGTAATACTTTCGCCAGGTGAGCTTAAGTTCAGACCTTGTGCAGTCCTTTGCATTCTCTGGGCAACTTCGCCTGATCGTCAAGTTGTCTTTCATACGTAGAGTAAGTAATGCTCTCTCGAGTCTCATCAGAGCCCCTAGTTAAGCCGTTTACAAATTGTTGTAAAGTACGTATAGGTTGTGAAATAGCAGGCATAGCTCTTCTAATAAAGTAGTTTGGAAGGTCACGACTAAAAGGGTTAAATCGTTCTTTTGCTTGGTTAATCTTGAAATCCTGCTCAAAAAAAACGGTTCTTCCAGAAGGAATAGATTTAGTGCTTGTGTATTCGATTACCTGATTAGGAGCAAATGCTTGGACGACCCTGACTGTCTGGGTGGACTGATCATACCCCATGATAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 205001-204836 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAXA01000002.1 Geomicrobium sp. JCM 19038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 205000 32 100.0 34 ................................ GCTAAAACTAATTGTCCTTTTCTGTTGCTCCATT 204934 32 100.0 35 ................................ ACACTGGATTTAAAGACGGTGAATTTGCTGAATAC 204867 32 93.8 0 ........................G..A.... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 97.9 35 GTTACGCCTTGTATAGGCGTATGGATTGAAAT # Left flank : AAAAGGGGACAGTCCCCCGGCGCGTTAAAGCGCTGGGGGACTGTCCCCTATTAATTATCGCGGATAGAAACTCTACAACAGTATCTTCAGATTGATTTAACGACACTTTAAAATTAGAACGCCTTTGACATTTATTCTTATTGCAGCAACCTTAATTTCATCTTCCGAATTGAATATACAACGCCTGTTTCTGGATAAACTAGTATCCATAGAGTTAAGTCGATAGGTTAGATCATCCGTGGAGGGCTCACGAATCATTCGTTCCAAACAGCGAATTTTAGAAATATTTTATAAGTATGCTAAACCGAACAACGATCAACACGATTTCTAGTGCGAACCCTAGGCGAACATGAATGACTAGGGAGGTTCGCACCAAAATTTTAGTTGATTATGTAATAATGTGTAATTACTAACTTCGTAATGTCACTAAAAACAGTAAATACTTGTTGATTTATTGTTAAAATTAGGTATATAGTCTTATTCGGTATATGATTTTGGCT # Right flank : ATCTCACGACTCAAGTTGCGGGTGTTCTACCTGAGTACAGTTTTAGTATCTTCTTTTATAGGTGCTTGGGTTAATACCTCAAAATTACTCCTAGTAATCGCAACGACAATCGTTACAAGTTGTCATCACCCTTTGGAAGTTAATTAGACCTATCCTATACAGACGCATACATAAAATAAAAACACGCTAAAACCGATAGACTATTCCACCGGTTCACACAAAAAACCATGCAATAGAAGAGGGATCTTCCATCGCACGGTCTTTATTATTTACTCTCTACAAACTTAACTAATTCGCAGCTAACAAAGGCATCGATTCAAACCGATCAACAACTTTCGTTAATGTCACGCCTTCCGGTAGGCGTTCGTTAATCTTTACCTCGTAATCTTTGTAAGAGCGTGGCGCAGCCTGCCCGCTCGCACTCGTCCGTTGAATTTGAATCTGATCGAAAAGTTGATCTGATGGTGCATTTCCTAATTTATGGTCATGAGAGAATACAT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGCCTTGTATAGGCGTATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //