Array 1 120840-122773 **** Predicted by CRISPRDetect 2.4 *** >NC_007929.1 Ligilactobacillus salivarius UCC118, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 120840 36 100.0 30 .................................... TATTTGTGGAGGTTATGATATTTGGATCAT 120906 36 100.0 30 .................................... TATCTATCGTATTTATCCGCCTTAGGTTTA 120972 36 100.0 30 .................................... CTGCGATACTGTATATACCTTGAGCAACTT 121038 36 100.0 30 .................................... AGAAAGCCAAATGAATAGTGGTTGGAATAA 121104 36 100.0 30 .................................... TCTGATAGCCAGAGAAATGAATATTGTAAA 121170 36 100.0 30 .................................... ACGTTTGACTAACGTAAGCAAAGTTAAAGC 121236 36 100.0 30 .................................... AGTAATGAATAGTTAAGTATAAGCGTTTAT 121302 36 100.0 30 .................................... TAAGCCCGTTAATAGTGGTGATACACAGCA 121368 36 100.0 30 .................................... TTATCTCTATGAAGAAATTCAAGCTATTTA 121434 36 100.0 30 .................................... TGGGTCAATTAACTACAATGTTATGACTAA 121500 36 100.0 30 .................................... TTCACAAAAAGCTATCAAAGAGACTACTGA 121566 36 100.0 30 .................................... TAACCGCTAATGTTAGATATGACGAAAGAT 121632 36 100.0 30 .................................... TTAAAGCAGTTGGCAAGGTTGGAGATGCAA 121698 36 100.0 30 .................................... GAAGTTTTACATTATGAAGCCCAAGCAAGG 121764 36 100.0 30 .................................... AGCGTATGTTGACGCTTATGATGGTTGGTT 121830 36 100.0 30 .................................... AAAATTATATTATAAGGAGTGCGGTTTTGT 121896 36 100.0 30 .................................... AAGGCGGTGAGATTAGTTGCAATGGCTAAA 121962 36 100.0 30 .................................... ACGGTATTAGTGGATCTAGTTCCGCTGGTA 122028 36 100.0 30 .................................... AAAGGGCTTGAGAAACAAGTTTGGTCAGAT 122094 36 100.0 30 .................................... ACAGCAATTTATAAGTTATCTCGCGATTGG 122160 36 100.0 30 .................................... CAATTCACACCGCAGTTCAATCAGCTTACG 122226 36 100.0 30 .................................... TGCTTTACCTTTTAATGTGTCTTTAAGCGA 122292 36 100.0 30 .................................... AGAAATCACATACAAGCTGCTATATGTTGG 122358 36 100.0 30 .................................... TAACGTTGTAGCGTTTCTATACCGGCCAGA 122424 36 100.0 30 .................................... CAGATTCCATAATCTTTATCTACGTTCTCT 122490 36 100.0 30 .................................... AAATTGATATTTTAACACGCTACCACCATC 122556 36 94.4 30 ..................................AT GGTTCTGAGCCTAGTTAGAATGACATAGGT 122622 36 80.6 80 ..........A..A......T...T..A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTGTTTTAGAGTGGTTAGTTTAGGTATTA 122738 36 83.3 0 ..........A.........T....G...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 29 36 98.6 32 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Left flank : AACAGACCGAATTAGCAAAAAATATATGAATGTGTTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCATATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAATTAGATAGAAAAAGAATTATAGGTCTAACCAATGTCGCGCATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGATTGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAACGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTACGGATACTCATTGACACAGGATATGCAAAAAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGCAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGTGACTATAAAGTTAGTTTGGATTCAATTTTCGAAAAAAATAGAGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //