Array 1 869338-871261 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057918.1 Escherichia fergusonii strain RHB10-C04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 869338 29 100.0 32 ............................. CGAACGCATGGTCCACACAGAGAGCCAGTGGA 869399 29 100.0 32 ............................. CATTCAAACGAACGAACCACTTTCTGGTAACT 869460 29 100.0 32 ............................. CGATCACCGGCGGCGACCTGGTGGAAATCGAC 869521 29 100.0 32 ............................. CAAAATTAATTTTGTTTTATCCTCGTCCAATG 869582 29 100.0 32 ............................. TTATTTTTGCTTTCTCTGCGCAATACGTTCGC 869643 29 100.0 32 ............................. CATCACGCCTCACTAATTGAAAAGCTAATATT 869704 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 869765 29 100.0 32 ............................. GCTGGGTATGTAGATGGCTGGAACGCCTGTCG 869826 29 100.0 32 ............................. TAAACGAGACGCCAGAGGAAATAATAAAAATG 869887 29 100.0 32 ............................. ATTGCTATTTCAGCCAGCACAGTGCATCACAA 869948 29 100.0 32 ............................. CCCAGCGGAGTGATCAAGGTTCCTGGCTCGAT 870009 29 100.0 32 ............................. CCAGTCGCTTTCAATTTTCGGCGTGTAGCCTT 870070 29 100.0 32 ............................. ATTTGCCTCATATGCCTCTGAGTCAAAGTTCG 870131 29 100.0 32 ............................. CGGGTGGCAATAATGGAAAAAGGGTGGTTTCG 870192 29 100.0 32 ............................. CCCCATCTAGCCATACGCACCCCTGGAGTCAA 870253 29 100.0 32 ............................. AGTGAGCAAAATTATTGAATTACCCGTTGAAC 870314 29 100.0 32 ............................. CAGGCGTGGAAAGATTTCCAGCCAGCGCGGCA 870375 29 100.0 32 ............................. CAACTGAATTTCAATCAATAGCAACGGGTTTT 870436 29 100.0 32 ............................. GTCAGTTAATCCCGACCGATGCCGGCACAAAG 870497 29 100.0 32 ............................. CCAGCTCTGATTACTCCACGGCAATAGGTTAC 870558 29 100.0 32 ............................. TGCCTCTATCCGATCCGGACTTGTCACGCGAA 870619 29 100.0 32 ............................. TTTCAGCGAGCGGTTATAAACGACCTGCGCAT 870680 29 100.0 33 ............................. GACCTGGAATATCGTTTCGGGCGCGACTCTTAC 870742 29 100.0 32 ............................. GTCAGGATTTGGAGAATATGTCTCCAGTAGAC 870803 29 100.0 32 ............................. TCTGATTCCGAACAAACCTAGCGGGCGAATTC 870864 29 100.0 32 ............................. TACAGTACCAGGCGGAGATTACCCGTTTTGAG 870925 29 100.0 32 ............................. AAATCAATCTATAGCGTCAGTAAATGGAATTA 870986 29 100.0 32 ............................. GGTATAGTTCCAACATACACGCCTATAAAAGA 871047 29 96.6 35 ............................A CCGTTTATTCTTATCGCTGGCGTTAACGTCCACAA 871111 29 93.1 32 .........A..T................ CCGAAAGTGGGCGACTACGCGGTCAACGAAGA 871172 29 100.0 32 ............................. GACACAGAGCGCCGCTATAGCGCCTATGCCAA 871233 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= =================================== ================== 32 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTTCTTTAGGATAACGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATGAATCTCGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCGTAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 896769-897834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057918.1 Escherichia fergusonii strain RHB10-C04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 896769 29 96.6 32 ............................C GAGGTGCCGCCAGTGTTATTTGATGCGATTTT 896830 29 100.0 32 ............................. CATATCAGGTATATCGTAACGGCGGGGCCGAC 896891 29 100.0 32 ............................. ACATCACGGTCAGCACAACGCCTGTTGCCTCT 896952 29 100.0 32 ............................. TTGAAATGGCGATGATGGAATACAACGTGAGT 897013 29 100.0 32 ............................. GGCGCTGATTGAAGTCACGCGGTAAGTAAAAG 897074 29 100.0 32 ............................. GGCGGGGCGGGGTCGGTAGGCAAAATCCCGGC 897135 29 100.0 32 ............................. CGCCCGACACCCAGCGACAGCAAAGACACGGG 897196 29 100.0 32 ............................. ACGTTGCCAGCATGTCCGGGCGACTACTGAAC 897257 29 100.0 32 ............................. ATGGCTGGATCATGGTTGTGATGGGATTTACC 897318 29 100.0 32 ............................. CTGGTATTTTCGACATTATGCTCAAAAACAGA 897379 29 100.0 32 ............................. TAACATCGTTGTACGGCTCAACTTGTCTTTGT 897440 29 100.0 32 ............................. TTGGGGTTTTTCCGTATATGGGGGCAACCATC 897501 29 100.0 32 ............................. AGTGAGTCTCGTCGTCGTCGTGCATTGCGGGA 897562 29 96.6 32 .T........................... GGAATCTGACAATACGGCAAAGGTGACTGTTG 897623 29 96.6 33 .T........................... AGTCCTTAACCTCGGTACTAAAACGGTTAATGC 897685 29 96.6 32 .T........................... CCTCTGGATTACTACCGATAACTAACACTGAA 897746 29 96.6 32 .T........................... GTAATGCACTCACCACGGTTACAACAGATATT 897807 28 79.3 0 .T..........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTAGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //