Array 1 52203-53242 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCKU01000015.1 [Pantoea] beijingensis strain ES4-1 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52203 28 100.0 32 ............................ AAGTGCCGACCGTTACTATGCCACTGCACTTC 52263 28 100.0 32 ............................ TCACTTATACTGTTCAACCGCTCAACACGAAC 52323 28 100.0 32 ............................ GATCGGCGCTTCGGCGCTGGCGGAGCTGAATA 52383 28 100.0 32 ............................ GAAAAATACGCGAAATGGCGATAACTCATACA 52443 28 100.0 32 ............................ ATTTACGTGGTCCAAGTGGTCAGGCTCCCTGC 52503 28 100.0 32 ............................ AGCAGACAGATTTCCCTTTTTTAGCAAGACAA 52563 28 100.0 32 ............................ CGTGACGCAAATGAGACATATCCTCGCCGCGA 52623 28 100.0 32 ............................ TTCGGCAATCGCCCGGTATGGGGCGGCTTTGA 52683 28 100.0 31 ............................ GCAGAATTTGCATTCAGTTGCCGTGGTTCCG 52742 28 100.0 32 ............................ TCCAGCGATGTGCGTAAATTTGTAATCTCTCT 52802 28 100.0 32 ............................ AGCGACCCGTCGCACCGCCCGGACCTCCGATG 52862 28 100.0 32 ............................ TGACAGATTCGTCACCAGCGACCGCCGGAAAT 52922 28 100.0 32 ............................ GTGTGCTTCAGGGGTCAAGGCAAAACGTTGTT 52982 28 100.0 32 ............................ GCCGAGGTTTAGCGCCTCGCGCACATCATCGC 53042 28 100.0 32 ............................ GAGCTGGAAGCCGGTGCGTGTCTACACCGACG 53102 28 96.4 32 .....................C...... TCCGCTTTTCGCCCGGCTGTCGTGTCAGCACG 53162 28 100.0 25 ............................ CTTTAGTGACGGAAAAGCGAGGCAT Deletion [53215] 53215 28 75.0 0 T.AT.................G.T..CG | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCGATAAAGAGACTCACCGTGTCATCGGTGGGGCGATTGTCGGTACGAACGGCGGCGAGCTGCTGGGTGAAATCGGTCTGGCTATCGAAATGGGCTGTGATGCGGAAGATATCGCGCTGACTATTCATGCGCACCCGACGCTGCATGAATCCGTTGGTCTGGCGGCTGAGATCTTTGAAGGCAGCATCACTGACCTGCCTAACCCGAAAGCGAAGAAGAAATAGTTTTTCTGCTTACGGTTGGTTATAAAGCGGCTCCCATTGGGAGCCGTTTTTGTTTTGTGCCGTTAGCACCCGGATGCGGTTACCCTTCTGTTAAACGCAGGGGATTTTCTGGCGACGGCGTGTGGTATGCTTTCCCCTTCGATAAACCCTGTTTTTCTTATTACCCGTAACGTATTGATTTTAAATCACCGTTTTATTGTCTGCGAAAAAAGGGTTTTTCGCGAAGAAGGCCGCTTTTCTTAATCGCAACAAAGGGCTAGGCTACTATGGCTTCT # Right flank : GATGAGAGACGTCAGGCGGCCCATCAGCATGAAATATGTTACCGGCTTCTCACGATGAGAATTATTCTGTTGCATACAGTGGCCTCCGGGATAATCCTCGTCTGGATTTATGGAGAATCACGGCCTGTCCTTTGAGATGATTTTATTTGCCAACCGGGCGCTGAAGCGCATCCAATATTTTGAGCGCCACCGTATACGCCTCAATTTTCAGGATGACCCAGTCTGCGCTGTCGCAATATAAACCTTTTGGGCAGGGCTTTGGCGAAAGGAAGGAAGCCCAAAGTATGCTGGCACCCTCAGATTTAAAAACGATCCTGCACTCTAAACGCGCAAATATTTATTATCTGCAATATTGCCGGGTTTTGGTGAATGGTGGCCGGGTAGAATATGTCACCGAACAGGGAAAAGCATCACTTTACTGGAATATCCCGATCGCCAATACCACGGTCGTGATGCTCGGTACCGGTACCTCGGTAACTCAAGCAGCAATGCGTGAGTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 62678-63546 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCKU01000015.1 [Pantoea] beijingensis strain ES4-1 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62678 28 100.0 32 ............................ GAAACGGATGATGGCGGGAATAAGCGAGAAAT 62738 28 100.0 32 ............................ GCTTGAAGTGGCAACAGAAGGTTCGCGGTTTC 62798 28 100.0 32 ............................ CTCCGAATTAGTTCACATTGCACCTAAAAATC 62858 28 100.0 32 ............................ ACCAGAATCCATCCTGACAGGATCGTGAATCT 62918 28 100.0 32 ............................ ACGTTGCGCCGGTACGATGACACTTACCTGAT 62978 28 100.0 32 ............................ GGATCATAGTTGCCCAGCGTGGCTTCTTTGAA 63038 28 100.0 32 ............................ GATGTAATCCGGCAGGCCGTAGATGTGCTGCT 63098 28 100.0 33 ............................ CTGAATATTTTGAGCCAGAAAACGGTAATGAAT 63159 28 100.0 32 ............................ AATAAAAAGGGCCACAATAAGCGGCCCGTTAA 63219 28 100.0 32 ............................ TGCCACATAAGGTATTAAAGGTGCCGCCATTT 63279 28 100.0 32 ............................ TTGCTCGGTCAAAACCTCCATGTGCTGCCCGA 63339 28 100.0 32 ............................ CGGAAGCGGAGAAAATACCGGTTCAGCTAATA 63399 28 100.0 32 ............................ GACGTACTGAGGATGTAACCTGAGCATCTTTA 63459 28 100.0 32 ............................ TCAAGCTTAGATAGCTCAAGCTTTCTCTTCGT 63519 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGTCAGCCATCTGCAACCGGTGGGGGAAGACCCGCAGCGTATTTTACGGCAGGTGATTGAGCAGTTTGAGGAACGGGTCGCGGCTTTTCCTTCTGGTTGCCAGATTTTGCCGGAGTTGCTGAAACTGGGCTGTGCTAAATATCGTGAATTTAATACATTGAATGGATATCGGGTGTTGTATTCGATTAACGATATGACAATAACGGTTTATGCCATCCTCGCCCAGCGGCAAGATATCAAACAATTATTATTTAAGCGGTTGATGATGGTATAGCCTGAAGTCATTACGTTAAACGGTGTAGATAGCGATACGGTAAATTCCTCAATATTTCCGTTGCTCTGATAGCGCTCAGTAATGTCGATTAAGCGACCCTTTTTTTTGCCCTTTACGTATCCTATTGATTTTTAATAAGAGGGGATTTTAATATAAAAAAGGGTTTTTTACGGAGAATGGTAAATTTCCATTTTATAACAATAAGATGAGATTTTTAGCTTCG # Right flank : ATCCCTGCAGATTTTAGTGAATGCCTTGCCGTTGATTCTTGCCCTCCTGAACACTCAGAAACAAGCGAATAAGGAAAAACGATCGCAACAAAAAGTTCACGATTCTAATTGCACATTCTCCATGCATTCTTCCCCATTTTAAGACAATACTGTGCGTCGCCATTTACGGTTCAGAGCCTGCCAGGGCTGGCCTGACCGATGGCGTGATTATTGCATCGTGACCTGCCTGTTCCAACTGCCTTATGTTGCCAGTGCGCGATTATATCGCCTGCAAAATGAGCACGTCAGGGACAATTATACTAATGCTAAGGGGTTGTGTATGAAGAGTGCGTTGATCAACGCAATAATAGTGAGTGCCGGTCTGTCGGTTATCACTGCTGTAGGCGCGGAAGAGTTGACCGGAACCTTAAAAAAAATCAATGACAGTAATGTGGTGGTTGTGGGATATCGGGAGTCCAACATTCCCTTTTCTTATCAGGATGATGCTAAAAATGTGATGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //