Array 1 17639-19831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000011.1 Gallibacterium salpingitidis strain F150 contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17639 28 100.0 32 ............................ ATTAAGCTAACCTACTAATTAAACGGTTCGTG 17699 28 100.0 32 ............................ ATTCGATTTTTAAATAAAAAATCTTTTTCGTG 17759 28 100.0 32 ............................ TTACTGCCGTATAGGTAGTTCACATTTCTTTA 17819 28 100.0 32 ............................ ACATTACCCTTGATATGGCGAAAGAACTCTGT 17879 28 100.0 32 ............................ AAACAACTTAGCCAGTTTAGGTCTATAAGCTA 17939 28 100.0 32 ............................ TCTTTAGGTAAATCGGATAAATCTGTTTTTAA 17999 28 100.0 32 ............................ AATCAATGAAGCGTTGAATTTTGGTTCTATTG 18059 28 100.0 33 ............................ TGTTGGTAATACTAAGACAGTCGGTGTGTTTTT 18120 28 100.0 32 ............................ ATTCAGTATGAATTCTAAGAGTGAATTTAATC 18180 28 100.0 32 ............................ TGATTTTGAGTAAATGGTTTATGAGGGTTTCG 18240 28 100.0 32 ............................ AATGGAATTTTTTTTCCCCATTTTTTGTTTCT 18300 28 100.0 32 ............................ TCTTGCTTTTTTATGTAACCTAATAATCAAAT 18360 28 100.0 32 ............................ ATTTCGTTGTAGTGGCCACTTAATACAGCCAG 18420 28 100.0 32 ............................ ACTGAAACCGCCAACTGGTTTGCTTCTAATTC 18480 28 100.0 33 ............................ TGATCCGTTTTTTAGGTTCATTGTTTTTAACAA 18541 28 100.0 32 ............................ AAATGCACCGCCTAACATATTCGAGTAATCAC 18601 28 100.0 32 ............................ TTAAAGTTGCTTTAGATAAAGCCAATATCAAA 18661 28 100.0 32 ............................ ATTCTTATTTGCCATCGCCGACCCAGATACCT 18721 28 100.0 32 ............................ TGTTTCATTTTGCAATGTCATTAGGGTTAAAC 18781 28 100.0 32 ............................ AGTTTGATAAGAATAAGGATAATGCAACCAAT 18841 28 100.0 32 ............................ GTACACGCTTGTTTCATCAAACGATAACATAT 18901 28 100.0 32 ............................ ACCACCACTGCCGCTATATAGCGATAAAATTT 18961 28 100.0 33 ............................ TGACACCTGCTCACTTTTTTGCTACCTGGTCAC 19022 28 100.0 32 ............................ ATAATCCTAACAATCGGTTTCTCCTGGTACAT 19082 28 100.0 32 ............................ AATAAAGTGGCTCGTTGGGATAGCACACAAGC 19142 28 100.0 32 ............................ TAAGAATTTTTTGCGAATCTTCACGAGTTGAT 19202 28 100.0 32 ............................ ACATTTCAACACACCGCACAAAACACATCAAT 19262 28 100.0 32 ............................ AACTTGCTTAGTTTCACAAATAACATTTGATG 19322 28 100.0 32 ............................ ATCACAGGTCGTCAAAAAGTCGGGCGTCATCG 19382 28 100.0 33 ............................ TAGAAAAAATCGCATATAATCTTTTTTTGCAAT 19443 28 100.0 32 ............................ AAATGCGTGGTGGATTAAGTTCGGGCCGTTGT 19503 28 100.0 32 ............................ TAATAGGAGTGAGCGAGAGCGAACGTAACCTT 19563 28 100.0 32 ............................ AGGATGCCGCCTAACTCGCCTTTCAGCTCATC 19623 28 100.0 32 ............................ TTTAAGCACTCAAACCGATAATTTCACCCCGA 19683 28 100.0 32 ............................ AAAGAGAGGATAAGCTATGAAAAACATTATCA 19743 28 100.0 33 ............................ ATACTCAACGGACAAATAACGACCATCTTTCAC 19804 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 100.0 32 CTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTCTTTCTTTTCAGCTTGAACCTTTACGCAATTATTTTCTAATTAAGGAAATCGCTCTTGTTCCTGAACAAGCTACTGCAGTTCGTTTTCAACGCATACAGCATAAAGGAAATAGTGCCTTACGTCGTGCAGAAAGACGTATGAGAGAAAGAGGTAATTTTTCTGCTGATATTCTAGAAAATATGCGTCTAAAACAGCAAGAAACACAACTTTATCCACATGTCTTTCTTAAAAGCGCTAGTACACGCCAGAACAAGATGTTACTTGAGATTAAGCGTGTTGTATGCCAAAAACACAACGAGGGGCAATTTACTGGATATGGGCTAAGTAAAGACGCAACTGCAACGATACCTCATTTTTAATTTGAAACCCTTTTTTTACAGGATAAATATATTCATTCAAAATCAATGAGTTATATTTAAAGCTAAAAAAAGGGTATTTTTATTCAAATTGTTCTTTAATAGTATATCTGCCTAATCTAAAGAGAATATAATCTCTA # Right flank : TGGATTGATAGCGGAACATTGATTGATCAAGGCTTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 82621-82787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000030.1 Gallibacterium salpingitidis strain F150 contig000029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 82621 32 100.0 34 ................................ AATTTTAAATATATCAGGATCTAGCATTTTCTCA 82687 32 100.0 37 ................................ GTCACTTACAAGATGTTATTGATAATATGATTGATAA 82756 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 100.0 36 CCAGCCACCTGCGTGTGGCTGTGAGTTGAAAC # Left flank : AAAAATATGTTAATGCTAATTACTTATGATATTGCATTCGATGATCCACAAGGTGCAGCTAGACTTCGTCGTATTGCCAAACATTGCTTAGATTATGGCATCCGAGTGCAATATTCTGTCTTTGAATGTGATATCGCTCCCGATCAATGGGTAAAACTCAAAGCAAAATTATTAGATACCTATAATCCTGAAAAAGATAGTCTGCGTTTTTATCATTTAGGTAGTAAATGGCGTCGCAAAGTGGAACATCATGGTGCAAAACCTGCAATAGATATCTTTAAAGACACGTTAATTATTTAAACTCACAAAAGCGCTAACCATTGATACTCATAAAAATACTGAGAGGTTAGCGTTTTTTTAATCGCTCTTTAAAAATCAATAACTTACTTATCTATATAGCATAAATAGATATGCTATACTTTTTTAACTCTCTATTATTGTAATATTTAGCGAATTAAGCTTCTTTCCGCCTTTACTGATAAGTATTCACAATATAGGGA # Right flank : TCGCTGCAGTTAAATTAATATCAGTATAAAAATAGACCCAGCCACCTGCGTGTGGCTGTGAGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTGCGTGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12906-12673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000038.1 Gallibacterium salpingitidis strain F150 contig000033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 12905 32 96.9 37 C............................... GGTTATCAAGCGCTGGAAATACTCTGGAGTTATGAAG 12836 32 100.0 34 ................................ GATTTGTTCGGCTTGATATGTGTAGCTTAATCCA 12770 32 100.0 34 ................................ ATTGACTCGCCCAACATTTCAAGATTTACGTTTG 12704 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 99.2 35 GCAGCCACCTGCGTGTGGCTGTGAGTTGAAAC # Left flank : GGCTGTGAGTTGAAACACCACATCACAAAGAAAAAGAATTTGTCACGTTA # Right flank : ATTGCTTGCATTGATTTTTTAAATAATGCTGCTGCGCAGCCACATCACGTGGCTGTCATCTATCAGATATCAAAGTTACTATATTTTGTAGCAGCTACTTCGAAGCAACATATCAAAAAAATAGCTGGCATAATGCACAGCTATTTGGATTAACGCAATGAAATTGATTGATTATTTATTATTAATAATTTCAGCGACTTCTACCTTACGGTTTTCATAGCGTGAACGGGTACAAGCATCAGCGGTAGCGATTGCAGCACGAGCTGCTTCCCCAGTCAGTAATTTGGCAAATTCTTCTGATGGCTTCATACCATGCATAATATCATTAAGATATTTCATCTCTTTTTTCATTACTGAACTCAACCATAACGGTGTCCGTTTACCCGGATGTCCATATTGGATAGCGCCGTCCATTTCTGTTCCTGTATAAATGCGGGTACGATCATCATCCTCTTCTTGTGTTTCGTGAATTAAGAAATGGGTATCTTTGCCATCAACAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTGCGTGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26221-26924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000037.1 Gallibacterium salpingitidis strain F150 contig000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 26221 32 100.0 35 ................................ GAGTCAATGTCAGATGTGGTGATGATTAACCACGA 26288 32 100.0 34 ................................ CCCAATTTAGCGTTGATTGAACAACGGCTTGCAT 26354 32 100.0 35 ................................ CAATTTTACGGCGCTAGCAGCATTGGTGTATGGCG 26421 32 100.0 36 ................................ TATACCGACAACGACGGCAAAGTGCTTGACGTCATT 26489 32 100.0 34 ................................ GAGATTGGCAAGGCGATTGGAATTTGTCTTGTAG 26555 32 100.0 37 ................................ TTACTTCTGTGCTGTCTTTAGTTGTTGCTACAGTTAA 26624 32 100.0 34 ................................ ATCATTTAATGCAGCGCGTACTTTATTTAATAGA 26690 32 100.0 35 ................................ AATAATCTTGCAAAGCGTTGATTAGACGAAAATAG 26757 32 100.0 34 ................................ GTTGTACTTTTCGCTTCGGTTTTGTCGGCTTGGT 26823 32 100.0 38 ................................ AGTCGTGATAACGATAACATAAATTGAGCAGCGGTTAG 26893 31 81.2 0 ...........T.........-..A..T.T.T | T [26917] ========== ====== ====== ====== ================================ ====================================== ================== 11 32 98.3 35 CCAGCTACGTTCGCGTAGCTGTGAGTTGAAAC # Left flank : TGCATATTCCTGAATTAATTCGTATGGGCGCAAAAGCTGAGATAGAAGGAAATACTGCGATTTGTCATGGTGTAGATCATCTTTCTGGTGCGGAAGTGATGGCAACGGATCTTAGAGCTTCTGCAAGTTTAGTGATCGCTGGTTGCATTGCACAAGGTGAAACTATTGTCGATCGGATTTATCATATTGATCGTGGTTATGAGCATATCGAGGAAAAACTTCGTGGCTTGGGTGCTCGTATTGAACGTTTCTCTGATAGTGAAATAGAATAAATTACGCATAATTATCTCTGTTTTCCTACTATAATTAAATCGCTAACCATTGGTTCTCATTGCATTCTAGGTGGTTAGCGAAATTTATTTTTCTTTAAAAATCAGATAGTTAATTCTAAGATATAGTATAAAGTGCTACTATATAAATAATTAATGTCCTTATATAAGAATATTAGCGAATTAGTGTATCTAACCTATTGTTTTATATATATATTTTTTATATTAGGA # Right flank : TCTAAGAATTAGCAGTTTGATATTTAATATCTATAGAACTTAATTTATCGATGATAGACAGTAATTGCTCTGTTTTTTCATCTGTAGTAGCCCAGCTTGTCGCAAATCTGATCATTGTATGATGTTCATCAATTTTTTCCATAAAGCCATAGTCAACATATTGTTGTAGAGCGGCAATAAAATTATCGTCTGCAATAAAAAAGATTTGATTGGTTGGTGAATCAACAACTAGTTTATATCCATATTCTTTAAGTTTTTTCTTAATTTTTGTTGCACTGTGAATGGCGGGAATGCCAATTCTTTGATATAGACCATCTCGAAATAAAGTATCAAACTGTACACCAAGAAGTCTTCCTTTGGCGAGGAGCACCATGCTGTTTGATAATACTGAAAAAATGAGGAATAAGATCTTTTTTAGTAAGCACAACAGCTTCACCAAACAATAGTCCGCATTTAGTTCCACCAATGTAAAATACATCACATAAGCGAGCAAGATCTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTTCGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19741-18873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000050.1 Gallibacterium salpingitidis strain F150 contig000045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19740 28 100.0 32 ............................ AACCGATGAACTCCTTAACAGCGTAGATCGAA 19680 28 100.0 32 ............................ TTTTGGGTTGAAAGGGTTAATGACAGTGGTTG 19620 28 100.0 32 ............................ CTCTTCAATTAAAAATGACACTCCCGCAAAGC 19560 28 100.0 32 ............................ ATTTGTTTTAAAAAGTCGTAGTTCTTTTTGAC 19500 28 100.0 32 ............................ TTTACAAACAAACATTGGTGTCGCAGTAGTAT 19440 28 100.0 32 ............................ TTGCGTGAAGCGGATTATCCTTATCTCCAATA 19380 28 100.0 32 ............................ TCCTAAGGCTAATAAATTTACTAATTGATAAA 19320 28 100.0 32 ............................ ATGCACCTGTATAACGACGAGGGCGAGCATTT 19260 28 100.0 32 ............................ AGAATATACTGTTACACAAGCCTTAACCAGAT 19200 28 100.0 32 ............................ AAAATCTGGGCTTTGATGCTATTGACCGTATC 19140 28 100.0 32 ............................ TTTAACATGCGCGCCGATTTCACCGATTTTGC 19080 28 100.0 32 ............................ AGATCCAACACCAATCTATTTTAGAGTTAAAG 19020 28 96.4 32 ...........T................ ATCAAGTTTCTTTTGGGTCGCAAGTTTTCTCG 18960 28 96.4 32 ...........T................ ATTTTTATAGCAACTTTACCTTGCTCAGTATC 18900 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.3 32 GTTTCCTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGTTTTTTGCTAAAAATATTGGACCTGCGTTAAAAGCTGATAATGCAGAAACTATGCAAAAACACCTTTCTGAACTTAAAGCTGCAGCACAACGTTCACTTGATCTTGTACCTGGCAGCTTAGCGAATAAAGGTAAGGATAGTGCTGAATTTAAAGATTATCAGCAAGGTATGCAGCATTTTATCACTGTTATTGACGAATCTTCCGCGTTAGCAGCAAAAGGCGAACTTGAGCAAGCCAAAGAGAAAGCCAAAACGTTACTTTCTATCCGTAATGATTATCACAAAAAATATAAATAATTAATTTCTAAAAACTACACCTCATCTACTTTTATGTATTTGGGTGTAGTTTTTATCTATATTAGTTTTACCCTTTATTTTTCAATATAAATAACCTTTTGATTTATAACAATTTTATTTTTATTGATAAAAAAGGTTTTTTTATTAATTTTATATTCTAAACCCTTGTCACTCTTCTTTTCGTCACATATTATGTTCTA # Right flank : AAACATTGTAGCAATCTCTCGATCATACGTTTTGCACTCAAGCAAATAAGCAACGCTACCCTTGATTCTGGATTCACCTCTCTTAGAACCAACAGACACAGTTTTCTGCTCATGGGTTACTCAACTTTATAATTGATTGATTACTTACCAACATCACCACACCAATCTGTAGGGTTAAATGCGGCTAGTTTTATCTGTTTTATTTTTTATAAAAAGTGTGAACTATGGTTTACATTTTGTGAAAAGTTATATAATGTAACCATACAAGGAGAGATAAATGATTCAGATAAAATCAACAGAAACCTTCAATAAATGGTTAAGTAATCTTAAGGATTTACGCGCAAGAGCAAAAATCCAAGTAAGAATTAAAAGATTACAATTCGGCAATTTTGGTGATGTCAAACCCATAGGTGAAGGAGTATCAGAACTTAGAATTACTGAAGATAAAGGTTATCGAGTTTATCTCAAGAATCAGAATGATGTTATTGTGATTTTGCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15057-17129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000007.1 Gallibacterium salpingitidis strain F150 contig000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 15057 28 100.0 32 ............................ GTATGGATAAACCTATTGATAACTTGATGAAT 15117 28 100.0 32 ............................ AACTTGGAAAGAATTAAATTCTCGCTATTTAT 15177 28 100.0 32 ............................ TATCTCATAGACGTCTAAAATATCATGATTGA 15237 28 100.0 32 ............................ ATAGCAGAAACATTAAATGCACCTGTGAATTT 15297 28 100.0 32 ............................ ACCTAGTCTAGGCTTTTTTATTGGGATTTATT 15357 28 100.0 32 ............................ GATTGATTTAGTTACTTTAGAAGCGAGATTGG 15417 28 100.0 32 ............................ TAGTACTGATTTCTCTGCTGTGATGTTGTATA 15477 28 100.0 32 ............................ TGAAGGGCATACTTGGAAATCCTATTGTGAAT 15537 28 100.0 32 ............................ GTAACGAGCAAGTACGGTTAAATTCATTGAAT 15597 28 100.0 32 ............................ AATTTGTAGAACCAGAAGCGCCTTCTGCTACA 15657 28 100.0 32 ............................ AATCCAGTAATCGCAGTCTTGTTCAATCTGTC 15717 28 100.0 32 ............................ TACGCCATCTAGCGCAAAGGGTAATTGCGTTA 15777 28 96.4 32 ....................G....... TTGCTCGAACGGTGTAATTACAAAATCTTCCA 15837 28 100.0 32 ............................ CTGAAGATAAAAAAGGTGCTAAGCCGATCGGT 15897 28 100.0 32 ............................ TTTATAGCGGTGTAATTGCACAGCATTGTTAA 15957 28 100.0 32 ............................ TGGTAGGTCTGAATTTGTGCTGATTGCACTGT 16017 28 100.0 32 ............................ ACTAAATCAGGACGGTAAGCGCCATGGCGCAA 16077 28 100.0 33 ............................ ATTGAAGTGTGTGAAGGTTCTAACGTGACAGCA 16138 28 100.0 32 ............................ TCTAACAGATGATGAATTATCAAAGTTGTTTA 16198 28 96.4 32 .............T.............. TTCCTCGTTTATTCAAAGAAAATATTGAGGAA 16258 28 96.4 32 .............T.............. ATATGGAAGCGTTCATGATGGACGCACAAAGC 16318 28 96.4 32 .............T.............. TACTGATGACTATGCCAATTATCAAGCAGAAC 16378 28 96.4 32 .............T.............. CTTTGCAGGTATTGTATTCCTCGCACTGTCGG 16438 28 96.4 32 .............T.............. TCTTGCTCTACTCACATGAATCACGCGAGCAA 16498 28 96.4 33 .............T.............. GCCGGCGGGTGTTACAACAGTCACATCAACAAT 16559 28 96.4 32 .............T.............. ATATACCTCAGCAGTGCCACATACCTCAGCAT 16619 28 96.4 32 .............T.............. TAGCACGGATAACGATACCATCAAACAGGAAC 16679 28 96.4 32 .............T.............. AGTCGTCATCGGAGAAGATCGAGATTATCTCC 16739 28 96.4 32 .............T.............. GCTAACCCAACAGGAAACTACGGGTTAGAACA 16799 28 96.4 33 .............T.............. TCTTCACCTCGAACTGCATTACCTTTCTTATCA 16860 28 96.4 32 .............T.............. TATCGATCATGACAACACTAAACAGATTGAGA 16920 28 96.4 32 .............T.............. ACTTCCTCTAATGGAAGTTTCACGATGCGCAA 16980 28 96.4 32 .............T.............. ACGCCGAAATCGTCAGGAAAACCACAAGTAAT 17040 26 85.7 35 .............T......--..T... TATAAAGAAAAAGCCCCGATAATTCGGGGCTTTTT 17101 28 82.1 0 GA.C...A.....T.............. | G [17104] ========== ====== ====== ====== ============================ =================================== ================== 35 28 97.5 32 CTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGATCAACAAGTTGTTTTAGGCCTTGTTACCTCAAAAAGCGGCGAATTAGAAGATAAAAATGCCATTATTGAGCGTATTAAAGAGGCTGCTCAATATGTTGATATCAATCAGCTTTGCTTAAGTCCACAATGTGGTTTTGCTTCAACTGAAGAAGGCAATGTATTAACTGAAGAGCAACAATGGAAAAAACTCGAATTTATTCGTGAAATCAGCGAAGAAGTTTGGGGCAAATAGTTAATCCAAATTTATTTTCAATTTTTCACTTCTTAAAGCTATATCTTAATTAAGGTATAGCTTTTTTATCGTTCTCAGCCTAAGCATCTTATTTTGTCCTTTATCTATCTTTTAGCATTATTTCTATTTCATACCCTATTTTTTAGACTATATATAACTTTTTGATTTAAAAGAGATTTATATCATTGACAAAAAAAGGGGTAACCATTACCGTATAAACGCTATCCCTTGTTGTTACTAGGATAAAGCTCTTTAACAATCTA # Right flank : AATAATTAAATTATTTTTCAACTGTTGTTTGGTGTTGACCACTTACAGAAACTTCAACACGACGATCTGGTGCTAAGCAAGCGATTAATGCTTTACGACCTTTAACTGCATCACAAGTATTGCCAGTTACAGGGTTTGCTTCACCATAACCAACTGCTTTAATTACATCTGGAGAAACAGATTTAGAAACTAAGTAGTTAGCAACAGTGTTAGCACGATCTTGAGAAAGTTTTAAGTTATATTTGTCAGAACCGATACGGTCTGTATAACCAGCAACTTCAACTGATGATAAGTTACCAACTTTAGAAATTTCTTGTTGTAAGTTATCTAATGATTGTGCTGCTTCTGGTTTTAAGTTTGCTTTACCGAAAGCAAATAATACATCAGAACTTAATGCAAATTTCTTGTTAACAACTTCAACTGCTGGAGCTGGAGCTTGTTCACCTTGACCAAAACGGTAAGAAAGACCTAAAGATACAGAACCAATGCTTGGGCTGTAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12126-11018 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000009.1 Gallibacterium salpingitidis strain F150 contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12125 28 100.0 32 ............................ TTTGAAAGTTGGAGCTTTATTTATGGAAATGG 12065 28 100.0 32 ............................ TTACTGCCGTATAGGTAGTTCACATTTCTTTA 12005 28 100.0 32 ............................ AATAAAGATAGCCAAACTGACATAAACCTATA 11945 28 100.0 32 ............................ AATTTGTAGAACCAGAAGCGCCTTCTGCTACA 11885 28 100.0 32 ............................ TGTATTTTTTGACTTGTAATAGAAACCAGCAC 11825 28 100.0 32 ............................ TGATTTTCAGCTCTTCTATGGTAAAAGTAACA 11765 28 100.0 32 ............................ TTTTGTCAATCCAGATAATATAGATTTATCTA 11705 28 100.0 32 ............................ TGATACCAACCCTGATTTAAAACACGGTATTT 11645 28 100.0 32 ............................ ACGGCGGAACAAATCTTGTTCATTTATAATAA 11585 28 100.0 32 ............................ TTCAGGTAATTTTTCAATAACAAATCCTCGGA 11525 28 100.0 32 ............................ AAGTTATCTTATCTTTAGTGGATAATGATGGT 11465 28 100.0 32 ............................ ATTTCATCTGATCGCTAGATAATTCTGTTTCT 11405 28 100.0 32 ............................ TTTTACCGGATCAAACACTTTTTCACGACGTG 11345 28 100.0 32 ............................ GCGTTCGTTTGTGAGCTACGTGATGATGTATG 11285 28 100.0 32 ............................ TATTTCTGAATATGAAAATTTACCACATGATC 11225 28 100.0 32 ............................ GCGTTATATGGTCGATAAGATGGTGGATTACC 11165 28 100.0 32 ............................ ATTTCGGGCAGCGTAAGTCAAGAGGATTTAAA 11105 28 100.0 32 ............................ GGGGTCTCCTTTAGGTCCTTGAGAGCCAGTTT 11045 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGTATTGGCGGTATCGCTGGTGCAGTATTAACAGGTGTATTCGTATCAACAGATATTACTGGCGGTGGAGCAAGTGTACTTGCCCAAGTAGAAAGTGTTGTAATTACTTTAGTTTATAGTAGTGTGATGTCTTTCTTAATCCTATGGGTAATGAGTAAATTCACTGATATTAGAGTCTCATCTGATGAGGAACGCCAAGGTCTTGACTTAATCTCTCATGGTGAACGTCTAGAATAATCAGGAATATTAAATAATTTAATTAAGCATAGTAGTTGTTATTGACAATCTTTCTGCACCGTAAAAGTTGGCTTCAACTGGAAGGTGCAGTTTTTTTATTCTTAATAAGTAATCTCTCTTCCTTATCAATTACCCTTATTTTTTCCCTTGATATAACCAATTGATTTTCCATTAATTTTATTAGTTTGACAGAAAAAGGGTTAACAACTAAATTTTTACTGTGATCCTTGTTATTTAAGGGATTACGGTAATTTATGGTCTA # Right flank : CAGTATTGTATATGAAATTGATATATTTTGAGGTTTGATTCCACCAAATTGTATTATCGCCTCCACTTAGGAGGCGATTTTTAACAGATAAAATTAGATTTATTTATCAGATAACATATCTGCTGCCATATGTTCTACTTCTTTCAACACAAAATCTGGCGCTTCATAATCTTTCGGTAAGTCATCTAATTTCTTCAATGGTTTCTTACCTTCACGTTTAAATCTAGCATTCAAATCTTTCAAACGTTTTGCATCATCTTTATCATTTTCAGCTTTTCTTTCATCTAAATTTAATGATAAGAATTTACGCTCATTACGTTGATCACGTGTTGCAATATCTTGATTTAATACAATAAATTCTGGATCGTTAGCAACACGTTCTTGATGACGCGTTGTTAAAGTTTTAATTATTGAAGATAAATCGCTCACTTTCTTATAAGAAGCTTCTGGAATTTTATCCCATACTAAAGCATTATCTTCTTTACTTTCACCATATTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19143-18395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000009.1 Gallibacterium salpingitidis strain F150 contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19142 28 100.0 32 ............................ TTGAGCTTGTGCAATCGCTTTATTTACGGCTT 19082 28 100.0 32 ............................ TGTATCTTTACTGTCGCCAGGTTTCGGTTTTT 19022 28 100.0 32 ............................ TGGAACACCAAATCCTTGTTCAATATTAACTT 18962 28 100.0 32 ............................ TATTTCAAAGAATTCAATAGAACAATTCTGAA 18902 28 100.0 32 ............................ ACGTGCCGTCTGACAGGTGCCAGCTGGCGAAT 18842 28 100.0 32 ............................ AATAAAGATGTTTTAGCTGGTCAGTTTTATAC 18782 28 100.0 32 ............................ GCTTATTATTAGAGAGGCGCCGATTGCAGGGA 18722 28 100.0 32 ............................ GCCGTGCTGAAATACTGCATGAATGGGCTAAC 18662 28 100.0 32 ............................ CTTTAATTAATACTTTGCAATGAGGGCTGATT 18602 28 100.0 32 ............................ AAAAACTCAAGCAAGCGGTTGATAAAGCAAAA 18542 28 100.0 32 ............................ ATTTTGCTTGTTTCTCACTTAAATTGAGAATT 18482 28 100.0 32 ............................ AATCAAAGATTACCTCTTTTGTGATTTCACTG 18422 28 75.0 0 ..........A.......A.T..GCGC. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 GTTTACCGTCGCATAGATGGCTTAGAAA # Left flank : GTGCAGTATAAATTTCTGCGAGTTTTTCCGGGAAAACTAACTTTATTCCTTGGGTAACTTGTTGTAATTTTTCTAAATTTGCTGGTTGCTGAACCTGTACAGCGGCAACCTGATCAGTGGTTTGATTTTGTGATACATTTACGGATTCTTCTGCAAAACTTGATTCCATCATAATTGCAGAACATAAAATTGTGGTTAAGACATGTTTTTTTTGCAACATATTAACCTCCTCTTCGCTTAGTTCTTTAAGTTATTAAAATAGTTATAATTATGTGACATTATAAATTAAGCCAATTGCCATTTCATCCTTTTTCACGAAAAGTGATAACGAATAGAGTGCTATCTTATTTATACAAATGATTTTATTTTACCCTTTTTTAGTCCAAGAAAATAACTTATTGATTTAACAATGTTTTTATTATCTTAGAAAAAATAGGGTAAATGGCTAAATTTTTATGTCATAGCTTGCTATTTCAGGAATGACGATATATTTTAATGAA # Right flank : GTGCTAAATAATTTTAGTTCCAAAACAACATCACTTACCGCAGCATAGCCGGACGTATTTCTTTAGGTACATAAGAATAAATTATCTTTTTTTCTGATAATATCTATCATTAAATACAATTCGTCTTTTTCACCTATCTTTATACAATAAATCTTTATATTTCTTTATTTAGGTAGGAGCCAAAATGAAATTCAATCTATTAACCGGCCTCATTATTGCCGCATCCAATCTTACAGCAAACTATGTCTTTGCTGATAATTCTGATCCCTTAGCACACCTTCCTTATTTCAATAAAACATCATCAGGTTATCAATTGACATTTGAAGGCAACCATTATCGTACAATCGAAACTGACGTTAATGGTAAAAAAATCAAATTTAGAGCATTTGAAAAAATTGTTTATGTACAACATCCTATAGAGCCAGAATATCAAACCATTAACTTTTATGTTCCAGAAGACTATTTTCATAATAAGGCTATACAGGGTTTTACATCTCAAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGTCGCATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 28302-27193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJL01000009.1 Gallibacterium salpingitidis strain F150 contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28301 28 100.0 32 ............................ TATGAACGTAAACAGCAACGCTTACGGAATCT 28241 28 100.0 32 ............................ AATCTATATCACCTAAATCAATCTCACCAATT 28181 28 100.0 32 ............................ ACATTTACTGTTAGCCACGTCCAAATGGCAGT 28121 28 100.0 32 ............................ TTACGGTTTGCAATTGTGGGCGTTATTAAAAC 28061 28 100.0 32 ............................ TAAAAATGTTGTAAGAAAGAGAATAACTGTAA 28001 28 100.0 32 ............................ TGATGCGTACGTTTTTGTTTATGAGTCTGGTA 27941 28 100.0 32 ............................ AAACTGTTTCAACAAATGCTTGTGAATCTACT 27881 28 100.0 32 ............................ TTAAATCAGTCTTTACTAAAGTCTAAACCTAA 27821 28 100.0 32 ............................ TACTCGATTAATTACAATTTCTGTAATTTCTT 27761 28 100.0 32 ............................ GTTGTCGCAATTTCTTTACTTGCTTCACGGGT 27701 28 100.0 33 ............................ TGTAAACTGATCTTTCGCTTCCATTTGGTCGAA 27640 28 100.0 32 ............................ TACTTGTACCGCTTTTGGGCGAATATAAAGAT 27580 28 100.0 32 ............................ AACAACAGCAAAGCTGTCGCCATAATCAATAT 27520 28 100.0 32 ............................ ACCAATCGGGAATGAAAAGCACTCTGAATATT 27460 28 100.0 32 ............................ AGAAGAAAAACCTCAACCAAAAGATGAGGGAA 27400 28 100.0 32 ............................ TGAAAACACAGCCGTATGTAATGAATATACAA 27340 28 96.4 32 ................A........... AAGGGGGATTGTTTACTCTTGCATCTACAGCC 27280 28 100.0 32 ............................ ACCACCGCTGGGAATGTATCAGATAATTGCAC 27220 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.6 32 GATTCCTGCCGCATAGGCAGCTTAGAAA # Left flank : GTAGATTACGGCGAATTGATAAGGTTGCTGCACCACGAGAACAACCTAAGTCATAGACATTTGTTTGCGGTTGTACAAAACGTTCCGCCAACATACCGATTGCAGTAATAATATTGGAATAGCCTGGAATAGAACGTTGAATCATATCAGGAAAAACTTCGGCTACTCGTTCATCAAAGGTAAAGTCACCCAATTTCTCAATGGGTGCTGAGAAAATCATATCTTTGGCCATGATTATTTGTGTTGAATTGAAAAAAAGGTGAGTATTATACAAAAATGTTCAATTTTTAAAAACTATTCTCCAATCCCACAAACTTGTTTAAAGTTGATATTTATCTGATAATTATCAGCACAATATCCCTATTTAACTACCCTTTTATTTCTAATAAAAATAACTTATTGATATTAAAAGATTTTTAAGACCTTACAAAAAAAGGGTTTTATAACCTTTATTAAGCTTAATCCTTGTCACACTTATATTTATACCATATTATGTTCTA # Right flank : AAATGGCTGTAATAGAAAATTAAATAAATATTACTAACTTATCCAAGTTATATATAAGCTTACTATCTTTATTTACTCTGTTGCAATCCTTCTATTGAATACCATTAAATAATATCTCTCTTACCTAATAAAGTTTGCCAATAGCGACTACTTAAAGCGATAAAAGTTTTAGCAGCTTCGGTTAAATAAGCATTTTTCTTATATACAGACATAATCTGCCAACTTGGACGTCCTTGTAAAGGAAATAACTCAATATTAGCTTGTGGTGTAATGACATTACTTTTAGGCACAATGCTAAAACAAAAACCTGCTCCCACAGCCTCTAATAATGTATGAATACGGGCAGATTCTAACAAAATATATGGAACAAATTCATTTTTCTGAAATAGATCCGTTAAGCATCGATAAAGTGTTGAATCTTTAGAGATCATCGCTAGTGGCAATTCTTTACTTAAACTACGTAATGTTACCCAATCTATAAATTTCAATTTATAACGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTACCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //