Array 1 261534-261863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEZV010000001.1 Fervidicoccus fontis strain 3639Fd 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 261534 24 100.0 39 ........................ TTTCTCGTCTAGATCTAGATCAACAGTAATCATCATTAT 261597 24 100.0 38 ........................ TTGAGTAAGCCTTCCTCACATAATTGCCGAAGCTGTAA 261659 24 100.0 36 ........................ TTTCATACATTTCTCTATTTACGTATATTTTTTCTT 261719 24 100.0 35 ........................ CTGTTTTGCTCTGTTTAAGCTTTGGTGTTATTATT 261778 24 100.0 38 ........................ GCGATTAACTGCTTTTGCAATGGCGGACAAGGATCCTT 261840 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 6 24 100.0 37 GAATCTCTCAGATAGAATTGAAAG # Left flank : GCTTATCTAAGTCCAGGTGAAGAACCTTTATATCGCTTTCCTTAATACCAGCTTTAGTAGCAAAGAGCTTGAACTCACTTAGCGCTTTGCCTGAAGAAGGGTTTTCTGGACCGCTTATTAGGATGATCTTCTCTCCGGGTTTTATAGAGCTGTCAGTTATTCTCCTCAATCCCACATCTGCATGGAAGCCTATGTTTATTATGAAGCACCTTTCCACAATTTATCACCATTTCCCTTTTTATTTTGGGAAGTATTTAAATCCTTTATAAATAAAAATTTGTGAATGAATTTTATGGATGAAATTTCGCATAGTTGGGAATATAGCTGATTTTAAACTAAAGGATAAATTAAACATATTTCTATTATATATTTTTTATTACAATTTCCTAGAAAAAATGGGGAAAAATATATCAGATCTTGCAATTTTTGCAATTGGACCGAAAAGTTTTTATTGTAATACCAAATTATAAATTATACAAATGAGCTCAAAAAATCGTGCA # Right flank : GGTGGCTGGGGTATATGTTTTCGTGATGACTTTATTTCTAAGTAAACCAATAGGTTTATTTTTTAGTTTACCTACTATTATCTTGGTGGTTAGATGAGTGTTTTCAGTCTCAAGCTTAGAAGGGATATCAAGGAGAAGATGAACAGGTATAAGGATAAGGTCAATTGGGCTGAGGAGATAAGGAAATTTATAGAAGAAAAGCTGAGAACGCTGGAAGCCGAGGATAATATTAAAAAAATTGTCGAGGAGCTCTCACAAATACCTATAGAGTCCCCCAGGGGCTCCTCAACTTCTTCTGTGAGGGAGGACCGTGAAAGTCATTGATGCTTCTGTACTAGCTGCATTCATTAGAAAAGAACCTGGGTGGGAAAGACTGGTAGTATTTGTAAAATTATGTACAACTATAGATCTGGCCGTGAAAGAAGTATTGAACACCATATGGAGAGATTATTCGGTTAGAAAAACTATTAGCATAGACCAAGCTGTAAGGTTGCGAGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCTCAGATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 2 266148-265638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEZV010000001.1 Fervidicoccus fontis strain 3639Fd 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 266147 24 100.0 37 ........................ TCACACAACTGCTTGATCTGTTTGAATAGCAAATAAG 266086 24 100.0 36 ........................ CTCTGTTGATGTTAATGCTGATGCCAATACATATAT 266026 24 100.0 37 ........................ TAGTTTTTGCTATGATTACTTAAAACCGGATAGGTAT 265965 24 100.0 37 ........................ TTTCTCCCGCTTACTTCAAGCATAGTTATTTTTTCAC 265904 24 100.0 36 ........................ TTGAAACATAACTTTTAGCCAGTTAAAAATTGTTTT 265844 24 100.0 36 ........................ CACCAATGCAGAGGGACAGAAAAATATGCTCTTATT 265784 24 100.0 40 ........................ TCTAATAGCTCGGGCTCATAAACTTTAAGCCCGAACTCCT 265720 24 95.8 35 A....................... AGTTCACCTCAACATCTTTATCGCTTATCCTGTAT 265661 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 9 24 99.5 37 GAATCTCTCAGATAGAATTGAAAG # Left flank : AAGCTCATAGCCGAGCGTTCCTATGAGAACCTGATTGCTTGGAGAGTAGGGAATTATCAGGTCCAAATGTTTCACCAACTATATTCTTCTTCATTTTGAATAAATATAATATTTTACTGAAATTTTATACTCTCTCGCTAAAATCTTTAATATCATTTAAAAACCATAAAATTCTGCTTTTAAAATGCTAGAGCCGAAAAGCATCAAACCTTAATCTAAAATTCATCATTTTTCCCTTTTTATTTTGGGAAGTATTTAAATCCTTTATAAATAAAAATTTGTGAATGAATTTTATGGATGAAATTTCGCATAGTTGGGAATATAGCTGATTTTAAACTAAAGGATAAATTAAACATATTTCTATTATATATTTTTTATTACAATTTCCTAGAAAAAATGGGGAAAATATATCAGATCTTGCAATTTTTGCAATTGGACCGAAAAGTTTTTATTGTAATACCAAATTATAAATTATACAAATGAGCTCAAAAAATCGTGCA # Right flank : TTAAAATTAATAGCGAAATTCAAGCGGTGATTCATAAGAACTTCTTCAATACTTCCTCTATAAGGAAACTTTCCTTAGATCTTATCCATGCTTCTTCAACGAAGAACTTTATTGCCATTTTCGCTGCTGTTTTGTCTATCGGAATTGCATCAGAACTTGTGCTGAAGTAGTTCATCATAGACATCGCGGAAGCTAATTGAATTGCCCTCTTCTCCAGTCTCATCGAAAATGGCACAGTCTTTCCTCTCAAGCTTTCAAGAACGAGCTCGGATGCTCTTTCTATTAGGCTGATCATCTCATCGGTGAGCAAGATCTTCTTCTCGTTGAAGATTCCCCTTACCATAGGGTTCTTGGTCTGTATAGCATAAATGAGAGTGAGATGATCTCTGAGCCTTGGGGCAACCATCCTCATCTTACTTTGAAGAGCTCCGAGCATGAGCCTCATCTGGCTCTTCGAGAGCTCGCTGTACTTCTCCTTTGTGAGCCTGTGGAGCCTGCAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCTCAGATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 303012-301407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEZV010000001.1 Fervidicoccus fontis strain 3639Fd 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 303011 24 100.0 36 ........................ AAACTTTCAATATCTTCTTTATTTAGCTCAATTTGT 302951 24 100.0 35 ........................ CGCAGGTGACTTACTCTGGGCCTGTCTCACAACCG 302892 24 100.0 33 ........................ TAATTTTAATAGTAATGTAATCGTCTCTATCAT 302835 24 100.0 35 ........................ GATAGCCTTTCAGTAGATGATAATGATACTCTTAT 302776 24 100.0 35 ........................ AAAGAAGAAGACGAGAGTGAAGAAATTTCTTTTGA 302717 24 100.0 37 ........................ TCATATTTCCACCTCCTCACATTTTTAAAAGAGAATA 302656 24 100.0 40 ........................ GCGATTATACAAAGGGTTTTTTAGAAATTGATTTCATTAA 302592 24 100.0 36 ........................ ACGAACATCTGCGTTGTGAGCTGCACAGCTACGCCA 302532 24 100.0 35 ........................ TACGATAGGTCATTGTGTGATCATATAGATTGTTA 302473 24 100.0 33 ........................ GCGTACGGTTGGTAGCTTCTCAAACTTTGAAGC 302416 24 100.0 32 ........................ TGTTTCAGGGCCGTGAAAAGCTGATTGAACGA 302360 24 100.0 33 ........................ GGTTCGTCATCGACATATGTCGGAGATACATAT 302303 24 100.0 32 ........................ TTGTCCCTATTATACGTTAAAATATACACCCT 302247 24 100.0 35 ........................ TTGAACTGTCATATTTTTACCTGACCTTTCAATTT 302188 24 100.0 33 ........................ TCACCATGTCGGGCAACTTTCCTACCTGGTCCA 302131 24 100.0 35 ........................ TAAATCATTCACAGCTACAGAAACAGCAAAATCAG 302072 24 100.0 34 ........................ CTATTTATGTATATAGTAGTCCCTTCTTTTTTAT 302014 24 100.0 39 ........................ TACCAAGGCTTAAACCAATAGTAGTTCTCCTTATCATTT 301951 24 100.0 30 ........................ AATAACTTTTCAGTGGATGATAACGATACA 301897 24 100.0 33 ........................ ACGAGTTCGTTAACTACTTAAACATACTGGGTA 301840 24 100.0 31 ........................ TCGTTCTCGCTTCTACACTTCCTCCATCAAT 301785 24 100.0 37 ........................ CCTATCCTTCTAGCATTAGGATCAAGTACTTTATTGA 301724 24 100.0 36 ........................ GGAATATTTGCCCTTAGAAATTGAATATTATCACCT 301664 24 100.0 36 ........................ TGAGGGGGCAGACTATAAAACTATAGCGAAAGAAGT 301604 24 100.0 32 ........................ ACTCTTATCAATACCGTTTTTTGACTGTTTGA 301548 24 100.0 33 ........................ CTTTTCACATATTCAATTAACTTATTAATATCG 301491 24 100.0 37 ........................ GCGGGCAGGAAGAAGTTAGAGAAATCGCGAGCATCGA 301430 24 95.8 0 ............A........... | ========== ====== ====== ====== ======================== ======================================== ================== 28 24 99.9 35 GTTGAAAATAAGCAAGACTAAGAG # Left flank : CCTATGCATCTACGAAACTCCCAAAATTCACTCCTTCTGCAATTGAAGTACTGATCGCCCCATATGCTATATTGAACCGAAATTACACGATAACGGAGAGCTTAGTCGTTTCCTCTTTTCCAATTATCGGGAAACTGGTGGAAACTTGGTACAGCATAAAGACTTTGAGGCCTATAGCAATATTCTTCAAGGGAAAGAAACAAGTTAACCTGGCAGGAAGTATAACCTATTTGATTCAGAACGAGAATGCTAAGGAGCTCGAAATGGTGCAGAAAACTCTGGCAGTTGCGGAACTAGCAGGTATAGGTAGATCGCGTCAGAATGGTTTCGGAACAACAGTCGTGGTCAAGTAAATAGAGGGGAGGTTTCAGCTTCAGATGTCCAGGAAAGTATTTATAAGCTTTTCCGACAAAAAAATACATGTCTACAAAGCTGACGGGATCCTTTTTGTCGGTGAAAATTGGGGTCCCGCATAGAATTTCCCGCATGTCAAAGCCCTA # Right flank : AAGAAATCGATTCAAAGCTGCTGTTGATTGATAAAATTGATGCGTTGCTCAGTTTTCATCGCTAGGGCTTTTGCCTGCTTCACGGCAATTCTCATCAGTTCTTCGATTGGAACTTCTAGCTTATAGCTGTATGTTCTATAACCATTATCGAAAGTTAGGAAATAGCTCGAGCTGAAGGGAATATATAAAACATTCATCCCAGCCCTGACTATTGCTGTCTTCAAAAAGCTCCTATCCCCCAGCAGGATGGCGATCCTTCCGATCTGCTTGCTCTTGAAATAGAGCTCAGCACCTCTTCCGACCTTGAGCTTAAAGCTGCTCAGGGGATCGATGTTTGGTAGCTCTGGAACCGCAATCTTCACCACGAAGCCCCCCTCGCTATATTCGTTCAGTCCAGACTCCTTTATGCTAAGAGGCAGGAAGTCAGTCAATCCCTTGAGCACAACATCCCTCCTCCTAAGAAAAATGAAACCCTCTCTGTAGAGCTCATAAGTTATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAATAAGCAAGACTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 312595-313754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEZV010000001.1 Fervidicoccus fontis strain 3639Fd 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 312595 24 100.0 37 ........................ CGACGTGCAAAGGGCGAAAAAATAAGCATATCGTCTT 312656 24 100.0 33 ........................ TATAATACTGGATTATATTTGATAGAAGAATTG 312713 24 100.0 33 ........................ CAGTTTTTCGCATCATAAAATTTTATAAACCTA 312770 24 100.0 37 ........................ TAAGAAAGCGTTATATTATCATATATTCAGGCTTCAA 312831 24 100.0 36 ........................ GCATTCGAGACTTCATGCTTTTTTAAATAGTATTTT 312891 24 100.0 38 ........................ TCTATTTCTTGCATACCTTTCACCTTACAATATACTTT 312953 24 100.0 38 ........................ TCTATTTCTTGCATACCTTTCACCTTACAATATACTTT 313015 24 100.0 39 ........................ TTACAGCCAATTTTTTGCCTTATTATATTGGTGAGCTTA 313078 24 100.0 35 ........................ TGAGATTGCCAACTGTTGTCTTGTAGAACGCTAAA 313137 24 100.0 35 ........................ TTGTTCACATAAATCTCCAACTAATTCCATATAAT 313196 24 100.0 40 ........................ TAAATTGACGAAAGCATTTTCCGACAGCTTAATTATCTCC 313260 24 100.0 29 ........................ ATAGGTTTTCTGCAGCAAGCAGAGCGAAA 313313 24 100.0 36 ........................ TCTGAACTCAAAGCGTATTCTTGTTCTTCAGGTACA 313373 24 100.0 40 ........................ GAAAAGTTCCCTCTAAGCACTACTTGAGCATATATTCCTG 313437 24 100.0 42 ........................ AAATTATCATATGGAATATTATTAAGTATTATTCTAGTTCTA 313503 24 100.0 32 ........................ GAAAGTTTTGCTTTTATTAGTCTCTTTTTCCA 313559 24 100.0 36 ........................ TGTTCAATATCGTCAGCTAACACAAAAACTTTTATA 313619 24 100.0 32 ........................ CCAACTACTAAATAAAGCGTATAATGTTGCCT 313675 24 100.0 32 ........................ ACTAGCTCCATTGTATATAGCTTCTTTGACTT 313731 24 87.5 0 .....................ATC | ========== ====== ====== ====== ======================== ========================================== ================== 20 24 99.4 36 GTTGAAAATAAGCAAGACTAAGAG # Left flank : TAGCGATAGAAGCTACAATAGATATGGTGAACGAAGGGCTTCCCGATCTAAATGAAGATGGTGAGCTCAATAAAGATGGGGTAAACCTGGCTATAAAGAACTTATACGGATACTTGACCCTTCAGCATAAGGATACGAAGAAGTCGATCTATCAGCAGATCTTTTTGAAAGCTTTTTCTCTGGCTAAATTTTTGGAAGGGGATTTGAAAAAGGAAAAGCTAACGATAGTTTGGAACAGAACGCAGTATAGATCTCATAATAAAGTTAAATAATTTGTGCAATCAAAAACTACATTTCAACAACATATGATTGAAGATCTGACTTTTGCAAAAACTTTGACTGGCAAGAGTTTTTTTTTTGAAAAGTTTCAGCTTCAGCTGTCCAGGAAAGTATTTATAAGCTTTTCCGACAAAAAAATACATGTCTGCAAAGCTGACGGGATCCTTTTTGTCGGTGAAAATTGGGGTCCCGCATAGAATTTCCCGCATGTCAAAGCCCTA # Right flank : CTGCCAGATAGAAATGAAGGGGAGGATAAAAAAAGAAACAGAGCTGGTTTCACTGTAATTAAGAGTCAAGGGAAAGGGAGATCTCTCCCAGTCCTATTCCCCTGCTTTTCCCTACCCCAACTATCTCCGCGATCTTAAGTAATCTAACAAAAGCTCTAGCAACCCCCTCGTTCATTGCCCTGTAGTTGATCCAACCGATTGTTCCCCTGCCTCTCCTCATATTTCCCTTATCGTCCTTTCCAAGCAAAACGGTGACAGGTTTGAGCTCGTGATCGACCTCTTCTACGAACAGGTCAAAGAAGCGAAGCGCCATGTAGGGGACCCTTTGATCCTTTTTGCCTATTTCACCCAAGTGCTCTAGCAGGTTCTTCAAGACGCTGCCCGCGAGCAAACCAGGAGTTGGTAACAGGGAATAGCTATCCTTCAGAGCAGAAGCTCTCTTCGAGAGCCATGGCGGTGTTGCTATCTTCTTGCTCAATATCGTCGGAGTTAGGAATCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAATAAGCAAGACTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 5 315156-315011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEZV010000001.1 Fervidicoccus fontis strain 3639Fd 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 315155 24 100.0 36 ........................ TTATTGCTGAGCTTGGTCAGTGGGATCAGGAAGCAA 315095 24 100.0 37 ........................ ATGCTAAAGTAAGCCGAACCGCTTCCCGTATTTGTCC 315034 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 37 GAATCTGCCAGATAGAATTGAAAG # Left flank : GGGTAGGTATGATAGCTCCATCCTCTCAAGTCCTCGGGAACAGGATCATTGCTCCTGAGCCAATACAGCCTCTTGGGAACATCCTTCACCAGAGAAAAGAGCATCTGCATCATCGAAACATTATTTAGAATTGCAAATTTTTTTGTATGAAAGTTGAGATAGTAAAAAAATCCCGGAAATACCTGTGAAAAATCGTGCTTTTCTGAAGCTGTCTCACGATTCGTAATATTTCCCGAGCTATTTCGGGAAGTATTTAAACCCTTTATAAATGCAAAATTCAGACAAAATGCTATATATAATTTCAACATGTTATTCCATCAAAGCAGAAGGCATTATAAATGAATAACTTATTTGTTAAATTATTATATACTTTTAATTATAATTTCCCAGAAATTTCTGGGAATTGATGGTCTTCTCGCGATCTTTTCGAGCGAGGCCGAAAAGCTTTTATTGATAATACGCCATTATAAATAATAAGAATGAACGCTACAAATAGTGCA # Right flank : TGACTTTCTAAAAGCTGACTAATTGAAAAGCTCATCAATAAGTGTCTTACGATCATAAAGACTTGCTTTAGTTGATAAGAACAAGCAGAAATTTGTTATGTGTGAAGTTTGTGTTATAAAAGTTAAGATACTTTATCTAAACATTGAAAAAAGTAGTAATAAGGCTTTAAGAAAAGTATAAAAAATTTAATTGCAAGAGAAACTTGTATACTACTAAGAAAATATTGACACCAAATCATACGAAGCTCAGAACGTTTTTGTTTATGTGTTGAGACTCTTGAAGAACGGCGTTGATTGAAATGCTCAAAAAAGTGAACGCGATTGTAGAGGAGTTCTTGAGAACGAGAAGCCTGATTAGAATAAGCTACAGGGTCAAGTCGAGAGACTTCATAATGCTTCCGCCATTGAGCTCGAACCTGCTCAAAGCCGCGGTAGCATCTTCGGAAGATCTGCGCGATATATGGGAAATGTATGCTGAATCGAAGAGACCTAGAAAAGTG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTGCCAGATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 6 346927-347718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEZV010000001.1 Fervidicoccus fontis strain 3639Fd 1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 346927 24 100.0 32 ........................ TCGACAAATATACCAAACTGCCAATCCAACAA 346983 24 100.0 36 ........................ CTTAGCTCTTCAAGTAATCCAGTCAATAGCTTAAGC 347043 24 100.0 34 ........................ ATGCTATATCAGTATTTCCCCAATGACCACATAT 347101 24 100.0 34 ........................ ACGCCTCTCCCCCGATTGTTACAGGGTAGGTGTT 347159 24 100.0 34 ........................ AAAAAGTACTCAATCCAGTTTCCATATTCGTCTT 347217 24 100.0 36 ........................ TTTTTTAATACTTTTCCCTTTGGAATAAGTTCTTCT 347277 24 100.0 37 ........................ ATATGCATCTTTTTTATATAAATTTTCTTTTTACCAA 347338 24 100.0 38 ........................ TACACTTCTAGCACTAAGCCAAGTGGCAGGCCTCTTCG 347400 24 100.0 34 ........................ CAAACCTATTGAGAAGCCCCAAACTTTCCGTTTT 347458 24 100.0 33 ........................ ATATTCTTTGAAAGGTTCTGAGCTGAGAACAAA 347515 24 100.0 33 ........................ TTTCAATAAGCTCAGCAATTTTTATTTTTTCGT 347572 24 100.0 39 ........................ AGAAAAAAAGGGAATAGAAATTCCAGAATTGAAAAATGC 347635 24 100.0 36 ........................ TTTACTTCAGTATAATAAGGGATTCCCCATTTTATC 347695 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 14 24 100.0 35 GTTGAAAATAAGCAAGACTAAGAG # Left flank : TTCGACGAGCTTGGGAGTAGATCCCTACATCCCCCTCGAGGAGGCAATGAAGCAGGTGGAGAGGGTCTCGAAGGAGATGGGGATACCCAGGGAAAAGCTGGTAGACCTCCTCATGAGCAACGCCGCATATAACGACATGATTGATCTGGATGTTTTCTCGCCAGGTTATTCGATAGTGAACGTCGAGGAAGTCAACATGCAGATTATGGAAATGATGAACGTGACATGTGGGGTGAGATGATGGATCTGCCCACACTCCTTTTCATCATCTTCATAGCTGCATCGGCATCTGTTCTGATATGGTCTCTGGCGAAGGAGGAGCTGATCTGAGATTGAGGTTCATGGATCGTTATAAAATTGCTGAGGTTTCGCTTCAGATGTCCAGGAAAGTATTTATAAGCTTTTCCGACAAAAAAATACATGTCTACAAAGCTGACGGGATCCTTTTTGTCGGTGAAAATTGGGGTCCCGCATAGAATTTCCCGCATGTCAAAGCCCTA # Right flank : GCGATAGAAGATATAAAGATGAGAGTGTTGAGAGAGCTGAGAAAGAAGAAGAGAGTGACAACTGCTGAGATAAAGAAGACATTCAAAGTTCCAGTATCTGAGGAGAGAATAAGAAAAGCTATAAGGGAGCTTATGGAAGAGAATATGGTGAAAAAAGTTGGAAGGGGTGAGTACATATCAGCAGTCAAAATAAAGATAAAGTGAGGATCATAATAAGAAGGAGATTAATATTTGTCGAGGAAGGAGGAGTGGAGAGATTAACAGATAGCAAATCAGCTGTCCAATTGATAAAAGAATATGAGAAAAAGGGGTATAAGTTGATCAATGCTGAGATACCATTTGGAGGGCTGGTGATATACAACCTTGAAAAATCTTAAGAGAATAGGTTGAAAATAAGCAAGACTAAGAGTGAGTTTGGTTCAGGTAGTTATAGTAAGTCCCCGAAGCGATTAGTTTTCCTCCGTAATATACCGAAACGTCCGTGTGTCTCTTCGCATCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAATAAGCAAGACTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //