Array 1 981676-982306 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE702393.1 Escherichia coli UMEA 3391-1 acXuX-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 981676 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 981736 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 981796 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 981856 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 981916 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 981977 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 982037 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 982097 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 982157 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 982217 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 982277 28 85.7 0 ....................A...C.CT | T,C [982297,982301] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 991363-992290 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE702393.1 Escherichia coli UMEA 3391-1 acXuX-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 991363 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 991423 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 991483 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 991543 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 991603 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 991663 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 991723 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 991783 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 991843 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 991903 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 991963 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 992023 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 992083 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 992143 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 992203 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 992263 27 92.9 0 .......................-C... | T [992283] ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //