Array 1 42893-43653 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDKU01000010.1 Escherichia coli strain G36 NODE_10_length_163532_cov_110.463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 42954 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 43015 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 43076 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 43137 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 43198 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 43259 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 43320 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 43381 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 43442 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 43503 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43564 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43625 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69356-70543 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDKU01000010.1 Escherichia coli strain G36 NODE_10_length_163532_cov_110.463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69356 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 69417 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 69478 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 69539 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 69600 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 69661 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 69722 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 69783 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 69844 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 69905 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 69966 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70027 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70088 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70149 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 70210 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70271 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70332 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70393 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70454 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70515 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //