Array 1 394-841 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEX01000031.1 Gilliamella sp. Lep-s35 NODE_31_length_22767_cov_197.092408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 394 28 100.0 32 ............................ ACACTTCAAAGTCGTCATCAGTCGGTAATGTG 454 28 100.0 32 ............................ AACGGCATGCCTGTACTTGTCGCTTATCACTT 514 28 100.0 32 ............................ TCACGCAGGCGGATTTTGCATAACCGTTCCAA 574 28 100.0 32 ............................ TTTCTCTCGTAAAGTTTTTAATGCACGATAGA 634 28 100.0 32 ............................ TTTTAGGCTATGCGCGTATGCAATAACCATAC 694 28 100.0 32 ............................ TGAAAAATTAATAATCACAAAAATAACCAAAA 754 28 100.0 32 ............................ CTGTTAACGCTTCACCTGCTTTTACTAAAACA 814 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACCGCCGAGTAGGCGGTTTAGAAA # Left flank : CATATTTACGGCAAAGCTCTTTAACGGCAATACCTGCTTCTGCTTCTTTTAATATCGATACAATTTGGTGTTCAGTCATTTTTTTCATAATTAAATCCCCTTTACTTTTATCATAGAGAATTTTCTACTTTTTTGCTGTACTATTTTAGGGGGGTGGTGTTACATAATATTGATTATCTAAATTGAAAGCTCTCGTTATATAAATAGTTTATAAAGGTGCGCTCAGATTTGATCATTCCTATTTTGAATTCAAAATTCTACAAAACCCTTTTTTTTGCTTGCTTGTTAATATATTGAAAAATATATATTAATTTTAATTCTAGAAAAAAGGGTTATTTTTTGAAAAATAACTAAAATTTATTTAAAACAAAAGGCTATGTCTGATATAATCTAG # Right flank : ATTAACGCACTCTATTTTGTGCCGCTAATTCATTAATAGCCGCTTCTGCCAAAAAATTACTCCGATCTTTATAAAAAGAGTTCGGTGCTTTAACTGCGTTATCTATTCTATCGATAAGAATATCGGGTAATGTGATATTAATTCTTTTTTGTTTACCAACAAATGATGACAAATCAACATCAATAATGACCCATGTATCGCAATGAGCATACTCATCGTTATTTTTATACGAAACATGATCGTTGTGAATATCTTTGACATCATAATCGCCTGATTCAATCATATCTTGAACAGTTAACAAAATAGCTTCAGTCGCCATTGCTGGGATATCGCTTTCTTTGTCGGCGGCAGAATAACAACTATATTTTTCATTACATAACGCAGGCACGACAATGCCGTAAGCTGTATTGCTATCGTTCGGTGTTTCAATGCCAAGAGTAAAAAACATAATACCTCCAAAGGTGGCGGGCTATAAAAGCCCCGCCGATTTTTTGATTGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15427-15814 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEX01000005.1 Gilliamella sp. Lep-s35 NODE_5_length_142011_cov_193.644230, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15427 28 100.0 32 ............................ AAATGACGCCTGTTATTGGTTGGTTACTGATT 15487 28 100.0 32 ............................ ATTGATTGCCATTTGCTCGTGATTTCCACGAA 15547 28 100.0 32 ............................ AATGCACGACATCGAGGATTGGTCTGAAAAAA 15607 28 100.0 32 ............................ AACATCAACAAAAAATAAACCAAGTTCGTTCA 15667 28 100.0 32 ............................ TGCGAGCAAAACCGCCTTTTTAGTACCATAAA 15727 28 100.0 32 ............................ GACAGCGTCATAGATGAATTTGACACCAATAT 15787 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTTACCGCCGCATAGGCGGTTTAGAAA # Left flank : TTATTATTTAATGGTGGTTGCATTAGTTGGATTAGTGACAGGTTTAAAAATGAAAGAAACCGCCAATAAACCGCTTCGAGGCGCAACACCTGCCGCATCGGATCGCTCAGAAGCCAAAGAGATTTTATCGGATCACTTTGATTCAATAGAGCAAAAAGTGGAAGATATCCAACAACAGATCGATACCTTACAAAAACAGCGTCAAGATTTGGTCGATCAGCATCCTAAATTAGATTGATCTTTTATTTTTGGGTTTTGTATGTTTTGTTTTAAAACATACAAAACTAAAGTTTAATAAAATCAATACGCTACCTGAGTGTTCTTTAACGGTAAAATTAGCACATCATAAAAATAACCAAAACGCTGCCAACCCTTTTTTTTATTGATAAATTAAAACAAATAAAAACAAAGCATTATAGAATAGCTACAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGCCTTTTGCTAAACAAGGTTTATAGTATATCGGCTTCTA # Right flank : ATTCAGGCATCATTATTTAACAGTATAACGTTCATTTCTGTATAACTGCTTATTGAGTCTTAACTCGCTAAACAAGGACGATGAATATGTGTAATTGTGGCACAATGTAAAAAACAAAAGAGTTTGACAGTTAACTGTGAAAAAATTATTTGCACATTAACTTACTATGATATTGTCGACGATACTGTGTTGGTGTTCGCTCTGTCTTTTTTTTAAAAATCCGACAAAAATAATTACTATCTTTAAACCCCGATGCTAGAGCAATTTCTTTTATATTTAGATCATAATCCTTTAATAGCGATTTTGCATATTCTAAGCGAATATGATTTAGATATTCATTTAGCCCTATTTTTCCCTCGCTTTGAAATAGATGTGATAAGTAATTGGGTGAAATGTAAAACATATTATGATGCGGCGTGTGATAATTATTGTTTAAATTAATTGATAATTAACCACGCCGTTGATTTCTATATTTGAAAGTGAATTACAACTTTACGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66200-67127 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEX01000006.1 Gilliamella sp. Lep-s35 NODE_6_length_107362_cov_208.873197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66200 28 100.0 32 ............................ CATGATTTGGGGCAATGAACCCTTTGTCAACG 66260 28 100.0 32 ............................ AATTGAGACCTGACTCCGATGCTCCAATTTGA 66320 28 96.4 32 .......A.................... ATGTCATTACCGAAATTACGTAAGTATTCGAT 66380 28 100.0 32 ............................ ATTTTACCGCCATTAAATATTATTGAAAGGGT 66440 28 100.0 32 ............................ AATGTATCCATCGATACCGCCACTTTGATTTA 66500 28 100.0 32 ............................ ATGGGAGTCTCACCCTCGTCGAATGTTACGAC 66560 28 100.0 32 ............................ TGAATGTCAAGGTGTTTATAAAAATTTTATTT 66620 28 100.0 32 ............................ TGTTGATGCTTGAGTTAGCAAAACTTCAAATC 66680 28 100.0 32 ............................ GATTTGTGATTGTTACATGCTGAACATTGCTT 66740 28 100.0 32 ............................ ACGTTGGCAACCGTATGCACAAAGTTATATTG 66800 28 100.0 32 ............................ ATCGCGCACCGTTGTACATTCTTGCTTCAGAG 66860 28 96.4 32 .........T.................. GTGCTGTGAGTTGATGCTAGGTAATTGTGATA 66920 28 100.0 32 ............................ TGCAGAGTGTTTTGCAACCCATTCATTTGTAT 66980 28 100.0 32 ............................ TACCCAATGACGATAACACCAAGCTCGTGTAA 67040 28 100.0 32 ............................ TGTTGATAGGGCACCATAACCAACACCGCCTA 67100 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 CTTCAATGCCGTGTAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCGATTAGTGATTATGCTTTATTGATGCCTATCACTGTAGTACCGACGACGATAAAAGGCTATTTACGTTTTAGCCGTGTCAATCCTAAAGGTCAGAGTGCGTTAAGGCGTGCCGAAAAAAGATTAACAGCACAAGGTAAATGGACACCTGAAGTGAAAAATAAAATGATTGAAAAGTGGGGAAGTGTTCATTTGCAATACCCACATCTTCATTTGAATAGTAAAAGTACAGGGCAAAAATTTATTTTGTGGATAAAGCAAGAAAAATGCCTAGAGCCAGTGCAAGGCACATTTAATAGCTATGGATTAAGCCAAACAGCCACTGTTCCTGATTTTTAAATTTCTAACCCTTTTTTTGGGGATGATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAGAAATTGGGTAAAGTGCAGTATGCTCTTTTACAATAAGGCTCTATTGAGATAAAATTCTA # Right flank : ATTGTTCAGATTTAAATAGCATCATTGTTGTAACTTCAATAATCATTAAGTCCCACAATATAACCCTTTCAATGTGGTTTAACCGTATTATAAAAGTGAATAAATCGCTTAAACTTTTGTTTTCTTTTTTTGAATATTTGTTGATTATGCTAGATTTCAATTAAAGTCTGTATCGCTTTTTTTGGCTTTTTTAATCTTGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAACCTAAAAAGTAAACAGTTCAACTTTAGCTAAATCAGTGATGGTTAGCTTTGTTTATGATATCAGCGCCATATCTCTTGTATGTGATATGGCGTTAGTTTGCTTTTTTATGGATATTTATTATCGTAGTGTCTTAAATTACTGTAAAAAAGAAATAATTACTACACATTATTAGTATAATAAGATCACTATTCAGCCCCAATTTGCGTACTCACTTTTATCTCTCTGTTATCGGTAATTTCTAAATTCGATAGCACCGCTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15951-14302 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEX01000019.1 Gilliamella sp. Lep-s35 NODE_19_length_45357_cov_182.335019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15950 28 100.0 32 ............................ CAGCTAACATATTAACGGTTGGTATTGGCTCT 15890 28 100.0 32 ............................ ACTGTCCTCAAGGTCTCAATCACATGCTCGAC 15830 28 100.0 32 ............................ TAGTACATGTTTTTTATCAGTGATACAGTTGA 15770 28 100.0 32 ............................ TGCATCACTAACACAGCCAAATAACGAGCCTC 15710 28 100.0 32 ............................ ATGATTAACTCACCAGAAACGAGCTTTTCTTT 15650 28 100.0 32 ............................ TATAAGGGGGTGGGAGCACGCTCCCACTTAAA 15590 28 100.0 32 ............................ GACAAACAAAGCAGTTGAGCGGTGGAGCAAAC 15530 28 100.0 32 ............................ TAATTAGTGGCTTTTTTATGTAAATTAATTGT 15470 28 100.0 32 ............................ ATTTCATGCTTGATTTTTGCCGTATTCGCTCC 15410 28 100.0 32 ............................ ATATTTCAAATCAATTGAACTTGCAGCGGGAC 15350 28 100.0 32 ............................ AAGAAAGAGGGGTAATTGATGAGAATAACGTC 15290 28 100.0 32 ............................ GTAATTAAAATAGCTTTCTCAATTGCTTTATT 15230 28 100.0 32 ............................ GCATGTGGGCAACATTAACGGATATATCGAAA 15170 28 100.0 32 ............................ TGATTTCGCACTAAAATTATTTGGAAGAAGAT 15110 28 100.0 32 ............................ TCGCCGGTCCAATAATCAAGACCAATAGGATC 15050 28 100.0 33 ............................ TTACTGGCATTAGAATTGCTATTGCTTCTTGAT 14989 28 100.0 32 ............................ TGAACCGCCGAATACGTCAACTATTGTCCAAC 14929 28 100.0 32 ............................ AATAAAAGACCCAGACAACATTAATTGGACCG 14869 28 100.0 32 ............................ CTCGACATCTTGAGCATTAAAAACATAATACG 14809 28 100.0 32 ............................ ATATAAGGGTAGGCGTTATAAATTGGGTGCTA 14749 28 100.0 32 ............................ ATTTCCGCTTTAATCTGCTTTGCCACCATTTG 14689 28 100.0 32 ............................ GCGGCACGTCGGCGAGTGTTACGCTGTGTATA 14629 28 100.0 32 ............................ CACAGGATGAAAAAAGAGATTTTCTAAATCAT 14569 28 100.0 32 ............................ AAACCATTTTTATTTATTTTTTTAATATTACT 14509 28 100.0 32 ............................ TATCAACAACGTGCCCACCAGCAACACGTTGC 14449 28 100.0 32 ............................ AGTCTGATTATAAAAAAGCAGTACAAAATAAT 14389 28 100.0 32 ............................ GCAACAAATAGCTCATTTAATTCTACGCTATT 14329 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACCGCACCACGGACTTCGTCGGCAATTTTCCATATTTGGCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTATTAGATGTCATATTTTTCAAAATTCCTAAATAAAAATAGGTGCTGCCTAATTAGAAGGTAACTAATTTTTACTTCCATATTAGCCATTTTATAGCTACCTGTTATAGGTGTTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGCGTTTATTAAAAACTCAGCCAATGGGTATTTTAAATTTTAAACTTGGGAAATATTAAGAAATAACAAAGCAACAAAATCTAAAAACAAAAACCCTTTTTTTAGCTGTATTTTAAAAGTTAATAAAATCAATAGATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAAACTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : AAAGGAAATCGTAGATCGATCCTTGTTAAAATATTAGACAGTATCTACCTATAACAGATAAGTGCCCTATCGGGCGTTAATTTTGTTTTTTATGTTTATTACTGCAATTTTTTAAATTACTGTAAAAAATGCGAGGGATTTCTATAGGTTTTAAATCCTGTTGTTATTATTTTAAAAAATGTTTTTATGTTATGAATTTCCATAATCAACGAGCTTTCCTGTTTTTTCATCACGCACACACCATTGCAAACGGTGATCCTCGCCAAAATATTAGACAGTGCCCACCTCTATCATTTTTTCGTTTTGGTAATATTGTTGTTCATATTGCTGCGGTGATACCTAGCCATTGGCTGAATGACGGCGTATCCGATTATAATAGATTTCAATATATTCAAATAGTGCTTTATTAGCCTGCTTCCTCGTTTTGTAGTAACAGTCATGAATAATATGTGTTTTGAGTGTATGAAAAAAACTCTCAACAACCGCATTATCAAAGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //