Array 1 25678-24079 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYR01000018.1 Halohasta litchfieldiae strain DSM 22187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 25677 30 100.0 34 .............................. AAGCGGTCGCTCCACCGTAGGGCTTCGTCATCTT 25613 30 100.0 35 .............................. ATCGCAAAGGATGATGGCGACTTGACTGCCTTCGA 25548 30 100.0 34 .............................. AGCTCACGACCGACCAGGAGGACGTCACGCTGGC 25484 30 100.0 36 .............................. CCCGAGCGCACGGAGGGCTCGACGTCTTCGGCCAGG 25418 30 100.0 33 .............................. TGCCGGTACCCCGCCGCGGCGTTCGCGACGTCG 25355 30 100.0 34 .............................. AATCAGTCCGGCGAAACGGCTGAAACGAGCGAGG 25291 30 100.0 36 .............................. GTGACTGCGCCGTTGGCGGGGAGCGATGCGCCGATG 25225 30 100.0 36 .............................. GTCGCGTGGTCGTCGCGTACGTGGCGTTCGAACCGG 25159 30 100.0 35 .............................. TGGGGGCAGTATCCTGGGCGCTCCGTAAAGAGGCA 25094 30 100.0 35 .............................. TACGGAGTCCGAGACACGGTCACCGACGCACTGGG 25029 30 100.0 35 .............................. AAACTCTAACTCGGAGATTTGCAAATCTACAGTCT 24964 30 100.0 35 .............................. GATCAGTCATCTATCCCTCTGCATGGTGTCGGTGG 24899 30 100.0 35 .............................. CGACGTGATCCCGGTCGAGGCCGAGAGCGAGGAGA 24834 30 100.0 35 .............................. CGATTGCTCGTCTGCTCCTCGGGGTGTGGCATCCC 24769 30 100.0 35 .............................. GGAGATAGTAGCACCTCCTAAGTGGCTTCTGTACG 24704 30 100.0 35 .............................. TACAGTAAGCTGATGCAGTACACCCACGCCGAGTA 24639 30 100.0 33 .............................. CTCTCAATCGTCGGGTCGCTCCCGTCGGTCCCG 24576 30 100.0 36 .............................. GGCCCCTCGATCTACACGTCGGTGCTGTTCGACGAA 24510 30 100.0 37 .............................. CGTGGGCACGTCACCGAAGCTGAGACAGTCCCGAAAG 24443 30 100.0 37 .............................. GTTTCGGAGCGGTGAATGTCACAGATACTGAATCATA 24376 30 100.0 40 .............................. GCGTGGTGGACCGGCCGGGCGAGTTCAGCGATTGATACGA 24306 30 100.0 36 .............................. GATTGAACCGAGATATCGCCAAACGCATTGTCGACA 24240 30 100.0 36 .............................. GACTCCGGGACAGCCGTTGTCGGAGATGATAATGGC 24174 30 100.0 36 .............................. GGCGACCGCTCGAAATCGAAGTCGGTCGCGGTCCGG 24108 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 35 GTTTCAGACGAACTCTCGTGAGGTTGAAGC # Left flank : GGGGTAGATACGGACGCCGTTAGTGCGATCCTCTTGCGACTGAAAGGCGCGGCCTCGTCCGGCATAAACGCCCATACTGGGCGGTCACGGACGGTACGGAACGACTCCAAGCTGCCTATCGGTGCATCAGTATCACGAGGCTGCAGACGAGCAGTACGGCGAGGAACATCTTGAGGAGCTCCAAAACGACGAGATGGAGCCCGTGCAGTGACGGTGTTCGATGAACTGGAACGCGGCAACATCGTCTGGGAGACCGATCCACTCTTGGACAACGGTCGACCGCTCCTCGTTTAACAGACCCCTCGGTTCCCTACTCACGGTTTACAACTCATCACTTGAGATCCGGTCGTGGACCGAGAGGTAGGGCCTTTGGGCCAAGAATCTCGACGGTGTCTCTGGTTTCGGTCGACCTCCCCGGGGTGAGAGGGGTATTGGAGGTCGACAGAACATCTTTGTGCAAACCCCGCATTATAGCATCTGTAGCCGGTATATCCGGCATG # Right flank : TCGGCGATCAGGTCGATCAGATGGAGATCGGCGTTTTGTCGGAGGCGGACGGCATACTCTTCGGCTGGTCCCGTGAATCGCCCCATTGTAACAACCATCCCTCGCTGGGGGCCGTCGAAGTCGAACGTGGCGATCGCTGAATGGAGCTTCTGAACGACTGGTCGACCAACGGTGTCGGTGTGTTTGGATTCGACGATGACTGCTTGGCGGGTTCCGTCGACGACTTCCTCTATCAGGACATCTCGGCCTTCGTCAGCCCGACGGTCGGCCTGTCGAACGTTCTCGTAGCCAAGATTACGGAATACATCCTCGATTACGTCTTCGAACTCGAACCCGGAGAAGTCGTCTAAACAGCCATTCTACTTGGTAAAGAACTATTGCTAATTGTATAAACACCATTGGAAACCAACAGGCAAACCCAGGATTCTATATCAGTGAGGGTCTCCAATCCCACATATTATAGTTCCAACCATTATAGACTAAACTATAATAGTCTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACTCTCGTGAGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2717-3850 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYR01000051.1 Halohasta litchfieldiae strain DSM 22187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2717 29 90.0 36 A......-..T................... GTGACTGACTGTATTATAACCCCTTCGGCTGTTCAT 2782 30 96.7 34 ......G....................... GCAGCTTGCTCCACAATTGTTTTGTGGCTGGGAT 2846 30 100.0 35 .............................. AGTGGTAGCCCGTTGGTAGTTATGTAGCAATGGAC 2911 30 100.0 33 .............................. GATCAGGGCCTTTTCCCAGTCTTGGTAATGATC 2974 30 100.0 35 .............................. ATTTCTACCGAGTGGCAAATGACTCCAATTCGACC 3039 30 100.0 35 .............................. CGACGACGGACGCCGACGTCGCAACGCGGTGGTCC 3104 30 100.0 35 .............................. GGGGATGCAGCCGACGTCGCCGGCAACCCATTGCA 3169 30 100.0 37 .............................. GCGTCGGTACGTCACTCGGTTTGACGATATCATGCAG 3236 30 100.0 36 .............................. TCGATTGCGGTGATGGGCGACGTCGACGGTGCGATG 3302 30 100.0 35 .............................. AATTGGGTAACGCTACCACGGACGCAACACTCACC 3367 30 100.0 36 .............................. CGGCGACGGCCCCGCGAAGTACCACAAACTCCCGGT 3433 30 100.0 35 .............................. AAGACGGTGGACCTTGCTGTTAGTGTCTATTATTC 3498 30 100.0 34 .............................. TATTACGCCACTTGTGCCATCACCATCGGAATCT 3562 30 100.0 35 .............................. CCACTGATGGTTGCGTAGTTGGCGGCTTTGTTCAC 3627 30 100.0 35 .............................. TACCAGCGACCCGTCGTGAAACCCCGCAGGAAGCG 3692 30 100.0 35 .............................. TTCATATCATTGATTATCTCGTTGACGGTAACTTA 3757 30 100.0 34 .............................. TAACGCGGGTCATATCGCAGTCCGAAGCTCGGAG 3821 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.3 35 CCTCCGACCCCACGAGGGTTGGTCTGAAAC # Left flank : AGCGAGTGGCCCGAGGTTCGGAGGCGAGTCAATGACGACGTAGTCATACTCTTCTTCGAGGCGGTCTAACGCGATCCCCAGGGCTTCGACGCCGCGTGCCTCTGAGTAGAGGTGCTTCTCAAGCCGGAAGTTGCGTAAATGAGAGGGGACTATATCAAATTCAGAACCCTCAACGATCAATTGGTCCAGGTCGTTCAACGTGAGCTGCCCGATGTCAGAGAGGACATCGTAAAGCGCGAACTCTGCTTCTCGGTAATGATCGCGATAGCCGAGCTTCAGTGTGAGGCCGCCTTGTGGGTCAGCGTCGACTGCCAGTACGTCGTGGCCTCGATCGGCGAGCGCACCGGCGAGGTTGATGCTTGTGGTGGTTTTACCGACACCTCCTTTCTGCATCGCGACGTTGATCCGCATCAGGTCACCACCTGTGCAATGCGGGTTTTATGAATCATACGTGTTATACAGGTTATCCGGGTCAAATAAATCTACGTCAGACAATAACA # Right flank : CCATGCCTAAAGTGGCGGTTTCAACCTCTCTACCAGGGAGTAATAGGTTGACAACTCAGTCGACCATCAATACACCTCAAAGGTGTGGGGGTCGACTACAGAGTTTGTATGAGTATGATTTTCTTTTTCCGTTTTTCGGCCGGTTGAAGTACCAGCCTGTAATACGGTGGGGTGCCTGCTCATGGCGTGACGTGTTCCTTCCCCCCAGGAGAACTGGGCACACGGTTTGTAATTTCCGAGGCCGCGTTGGGTTGTGATCCCTGTGCCTCAACCGTTGTTGGTATAGTACTACCTTGAGCCGACTGCTGTCTATGCAGTTCTTTTCGCCTATCTCGGCGTGGCAACGCGGACAAATGATCCGTGTCCATGCATTCAAGCCAGTCGCGCACTGGCCGAGCTTGACGGCGGGCAGGCTTCATCCGGTAACATCAACCGGACTGCGGGGCGAAGTGCCCCGTTGCGAAGTGTGAGATATACCCACTTCCGCTTGCTCTCATTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCGACCCCACGAGGGTTGGTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 95-386 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYR01000050.1 Halohasta litchfieldiae strain DSM 22187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 95 30 96.7 34 C............................. CGTTGGCGCTGCGCTCGGTTGGCGGTCGCGACTG 159 30 100.0 37 .............................. CGAACATTGCTCAATGCGCTCCAAGACTTCTCTCCCG 226 30 100.0 36 .............................. ATTCCCTTCGTGCCTTGAATCAGCCACTCCCAGACT 292 30 100.0 35 .............................. TCATATCTTATCGCCTCCCAAATGGTGCGAGGACA 357 30 80.0 0 ....................G...CCGTT. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 95.3 36 GTTTCAGACGAACGCTTGTGCGGTTGAAGC # Left flank : GCGGGAGATCTTCGACATAGGCATCGACAGTCTCCCGCTTCAACTCCTTTGAACTGACGACCTATCCCGACGCAGTGTGGCGATTCACCAGAGCC # Right flank : CTACTTTCACTGCGCTTTACATTCTTTTATATACTGTCTGTGAGTATTAAGTATTGGATGACATCCCCCAATCACAGAGGTGAGTCCAGTAAGTGCGCGTAATGGCTCACCTATCCGCACGTGCAGACACGGTATACCAAAATGACTACCACGACAAGCTCCGCGGTCGACTCTGGGGTGCCCTATCAGGAACCAAATACGATGAGCGACACGACTCGGGTAAACCACCAGGGTTCTCGTTTTCTAACCCGTTCCCCCCACATGATATGCAGGAGGGTGACGACCGCAAACTGCTAGTTGCCTCTCCTGACGAGGAACTGCTCGCCAACGTCGCTGCGGACCTACTTGAGGAGCCGGAGCTCAATATCGGCGAGATGCCGTTTCACGTCGACGATGTAACCTCACTCGAACCCGACGTGGGAGAACCCGGAACACGAGGGACGATTGAATCCGGAACCGGCCTGCTAGTCCGGATACCGCCGTGGCGGTGCGAAGAGTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACGCTTGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9849-15520 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYR01000050.1 Halohasta litchfieldiae strain DSM 22187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9849 30 100.0 34 .............................. ACTTTCCTCTACTGGATCATCGTAGGGATTCCGA 9913 30 100.0 36 .............................. GCCTACGGCCCGAAGGGATCGGGCAAGACGACGTTC 9979 30 100.0 36 .............................. CGCCACAGAGTTGCGGGACGTACTTCTTGAGCGCGT 10045 30 100.0 34 .............................. CTCAGCCGAGTCATCGCCATTCGTGTGTTCTCTT 10109 30 100.0 34 .............................. GAATCGATACCAACCTCTTCGGTGAAATTGCCTC 10173 30 100.0 35 .............................. AGTTGTTATTGATACTGAAACTGATTATTACATCA 10238 30 100.0 35 .............................. GAATCTGAAGAGAACATCGGGATACTGGCACACCG 10303 30 100.0 36 .............................. AGCCTATCTGGCTACGATCCAGTCGAATCTCCTCAA 10369 30 100.0 34 .............................. GAACATATCAGTAGGAGCATAGTCCCGACCAATT 10433 30 100.0 36 .............................. AGTGGTAACCGAGGGTATCCCTTTGAGGGACCGAGG 10499 30 100.0 35 .............................. TAACTGTCGGGACGTGGTTTTCGGCCGTCTTACAT 10564 30 100.0 37 .............................. CCCGCAGCGTCCGACTGTGCTATTGTTCACGTTGATG 10631 30 100.0 35 .............................. TATTTCACTTACGACATATCGCGCGGAGAGGGCAC 10696 30 100.0 34 .............................. GTTCGACTCGATCAGCGCGTCCCAGAACACCGTA 10760 30 100.0 37 .............................. ATGTTCACGACACCGTGTTCCGCAGCCATGGATTGGA 10827 30 100.0 35 .............................. GGTCCATCGACGTCCTTCGTCGTGGGCTGAATAAA 10892 30 100.0 36 .............................. TTCCGAATCGAGGCCGTTGCCCTCCATCGTAATTTG 10958 30 100.0 35 .............................. TCCATGACCCACACCGTTGCGAGTACGCCCACCAC 11023 30 100.0 37 .............................. ATGGACTACCGAGATGTCAGTCCAGCGCAGGTCAATG 11090 30 100.0 36 .............................. CGAATGGGATTATCCAGCGCCAGTGTGCGAAGACTG 11156 30 100.0 35 .............................. TTTACCAACGTCAGAGGCCCCGACGACCACTCCGA 11221 30 100.0 35 .............................. CCGTTCAATGGCAACCACAAGGCCATCGCGTCGTC 11286 30 100.0 37 .............................. GAGTTACAACACTGGGTTGATACCTTCAGTAGTAACC 11353 30 100.0 36 .............................. CACCGCTGTCCGATCTCATACCACCCGGCAATGTCG 11419 30 100.0 34 .............................. GGAGGTGTCCCCCGATGGGTCATCTCCCGGCATG 11483 30 100.0 37 .............................. CTGTTGAGTCGCAAAGAACTCATCCACCGTGGCGACA 11550 30 100.0 35 .............................. AGGCCTCCGAGCGGCGATTTTGTTAGCGAGTACAA 11615 30 100.0 37 .............................. ATGGTCGTTCCGTCGTCGAATTCGACCACGACAGACA 11682 30 100.0 35 .............................. TTGAACAAAGCCGCCAACTTCGCAGCTCCCACCGG 11747 30 100.0 35 .............................. AGGTATCAGAGGATGCACCACCAGCAGCCAGTCGA 11812 30 100.0 36 .............................. GCGCTTTTCGACGAGGACCGACCCGATAACGAACGG 11878 30 100.0 36 .............................. TCGATCTCCTGGTCCGACCCCGACGACTGGCATAGC 11944 30 100.0 37 .............................. GACTTCGACTATTTCAGGGACAAAAGGACTCGAAACA 12011 30 100.0 37 .............................. AACTTCGGCGGCTACTCACTCTCGACGGCGTGGGTGA 12078 30 100.0 36 .............................. GACATTGCAACTCAAACAAAGGCTCGGCTTGACTTA 12144 30 100.0 36 .............................. ACTGATCAACCTACCGGGGGGCATCTTCTATCGCAC 12210 30 100.0 38 .............................. CGCTTCCTGCGTGTGCTTTCCGCGGGGTTTCACAACGG 12278 30 100.0 36 .............................. TGTGGACGCACACTGGCCGCTGTGTGATCTAGGGTG 12344 30 100.0 36 .............................. CGCGGTGTGTTGCTACTCGAAGACGCCCCGCAACAG 12410 30 100.0 34 .............................. TATCGCACGAAGGCGATTTACACGTACCAGCCAA 12474 30 100.0 34 .............................. AGGGTGGGGGAGAGAATCGGGGGGGAAAGTAACA 12538 30 100.0 37 .............................. GACCGTGACAGACACTCCGGTGGGGGCGGCGAAGTTG 12605 30 100.0 36 .............................. GCGATACAGTCACCGGTGTTTTCTCGAAGGTCAAAA 12671 30 100.0 36 .............................. GAGTCCTTAGTGTAGTCGGTCCACCCGTCGAAGATA 12737 30 100.0 37 .............................. AAAGGGCAACTCGTCGAAGTCGAACAGTCGGATACGT 12804 30 100.0 35 .............................. ATCACCAACGAGGGGATCTACGAGGGGCAGTTCGA 12869 30 100.0 36 .............................. CGTGGAAACCGGCGACGACTCGTCGGAGAGCTGCGA 12935 30 100.0 35 .............................. TTTCATCGCGCCGTCGACGTCGCCCATCACCGAAA 13000 30 100.0 35 .............................. AATTGGCCCGCCTCCGCGAACGCTGCGACCTGCGG 13065 30 100.0 36 .............................. CCTCATACGGCTCCTCAGTGATCGTTATGGTTCCAC 13131 30 100.0 35 .............................. TGGTGGAGGTCGGTGGCCAATGTGTGTCCACAGGG 13196 30 100.0 37 .............................. GACAGTTGGACCGACCTCCTGGAGAACCGCGACGACG 13263 30 100.0 36 .............................. GATGGAGATGGATTAGAGGTCACTGGGTTGTCGGTG 13329 30 100.0 37 .............................. GATACGGCAGTCATCCACGAGCTGACGATCTCGACGA 13396 30 100.0 34 .............................. GTCGACCCTCCGTCGATAGTTTTGCCAGTCGGTC 13460 30 100.0 36 .............................. ATACTACAAACCTGATGAGGAGACCCAGTCACCGGT 13526 30 100.0 35 .............................. GAGGAGTGCGTCCATATGGCCGAAGCATGCCCCCC 13591 30 100.0 38 .............................. GGCCTCAAACTCACCAAAATGCTCGGCCATTCGGACTA 13659 30 100.0 37 .............................. AGACGAACTCCCGTGAGGTAGATGGATCTAGATCATG 13726 30 100.0 35 .............................. AGCGACTCATCCGACCGAATCCCGATTCCAGCGGC 13791 30 100.0 35 .............................. CAACTAGATCAACGGGTCGGCTTGACTTAAGGGTT 13856 30 100.0 37 .............................. GAATTCTAAATCAACACTGCCGGAATTGACGACTACA 13923 30 100.0 35 .............................. CTCGCTTTGGGCCCACCCGCGGAGATAGCCGACAG 13988 30 100.0 36 .............................. AACAAATGACTGCGGTTTTCGATGGGGCTAACTCTA 14054 30 100.0 36 .............................. GACCGGGATCGGGGCGCGGTGAGCATCCTTCGACCG 14120 30 100.0 37 .............................. GTGCTCAAACTCACCAAAATGCTCGGCCATTTGGATT 14187 30 100.0 36 .............................. CGTGCACGTTGCGATACGCGCGTATTGGTATTTCCC 14253 30 100.0 35 .............................. TTCGGGAATGGCTGGCTCGTCTGGGATCTGGGCGA 14318 30 100.0 35 .............................. ATGGTTGTCTAACTACTGGAACCAGAAACACGCTG 14383 30 100.0 34 .............................. GTGAGGCGAGCCACGCGCAGGATAGGGTATGCGG 14447 30 100.0 35 .............................. AGTCCATGGCCGCTGAGTACGGTGTCTACAATATG 14512 30 100.0 34 .............................. TGGTGGTAGGTCAGTGGCCGGTTTTGGACCTATG 14576 30 100.0 33 .............................. GCTCGTCGGTCGGCCTTCGTCGGGGTCAATGGT 14639 30 100.0 36 .............................. GTTGCCAGAACGACGATTGTTGCGAGATTCCGAACT 14705 30 100.0 35 .............................. GGACGCTCGTCGAGAATGGTGGCATCCAGTTCTTC 14770 30 100.0 35 .............................. TACCGCCCCATTGCACGGCGGCTGGCTGAAGCCCA 14835 30 100.0 34 .............................. TGTTTACCCTACTTCTATACGGCTGTTAATAGCC 14899 30 100.0 36 .............................. TGGCTGTGCAGGTAATCGATATAGCGGTGAGTGCTT 14965 30 100.0 37 .............................. ACAGTCGATCTCTCCTGATCGGGCGGCTCTGGTTGTT 15032 30 100.0 36 .............................. CAGAGCCTTCCATAGCGGCCTCAGATACCCAAAAAC 15098 30 100.0 36 .............................. AAATTATGGAACAGCGGCCTGATCGGTATTCGGATG 15164 30 100.0 35 .............................. AGTTGCCACCGCATCTTTGACTCAGTGATGCACGG 15229 30 100.0 36 .............................. AAATTATGGAACAGCGGCCTGATCGGTATTCGGATG 15295 30 100.0 36 .............................. TCATCTCCGTCGTTGTCTCTATCACTCATGCTACCA 15361 30 100.0 33 .............................. CCCGCACCAGCTTGGAAGTGATGGTTCTCTGTT 15424 30 100.0 37 .............................. AAAAAATAAGATCCGACAGCAACGATCTCGTGCTTAG 15491 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 87 30 100.0 36 GTTTCAGACGAACTCTCGTGAGGTTGAAGC # Left flank : ACTTGAGAGAACGGTCGACCATCCAGAACTGAATCGGAAGGTTAGCTACCAGTATCTGCTTCGGCTGGAAGCCTACAAACTGAAGAAACATCTTCTCACTGGCGAAGAGTACGATTCGTTCAAGCGATGGTGGTAGTATGTATGTCGTGATGGTGTACGATTTAGAAGCTGAACGGACTCATAAGGCTCTCAAATTGGGTCGACGGTATCTGACCCACGTTCAAAACTCAGTTCTTGAGGGTAAAATTTCAGAGGGTGATCTCAAAACACTGCAAAACGAAATCGACGATCTGTTGAAACCAGGAGAGTCGACGATCATCTACGAATTGTCCTCAGATACACTGCTCAACCGTACCGTGTACGGTGAAGATCCCACCGAGGATCAACGGTTTCTCTGAGTTTCCGTCAACCCCCCGGGGGTTTGGGGGTGATTGGGGGTCGACCGAAGTGCTTTAGTATAGCCGTCCGGTAGAGAGCTTGTGACCCGTATTTCGGGCATG # Right flank : GCTCGGTCGGACAATATCCTGGTCGTGTCGCAAAGTCCTCTAGAGTTCAGTAGTAACTGACTCCCGTGAAGGCGGGGTTGCCTCTGGTGTCCAAACCGAGGTACCCCATGCACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACTCTCGTGAGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-875 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYR01000068.1 Halohasta litchfieldiae strain DSM 22187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 30 100.0 34 .............................. AGATTCCGATGGTGATGGCACAAGTGGCGTAATA 65 30 100.0 35 .............................. GAATAATAGACACTAACAGCAAGGTCCACCGTCTT 130 30 100.0 36 .............................. ACCGGGAGTTTGTGGTACTTCGCGGGGCCGTCGCCG 196 30 100.0 35 .............................. GGTGAGTGTTGCGTCCGTGGTAGCGTTACCCAATT 261 30 100.0 36 .............................. CATCGCACCGTCGACGTCGCCCATCACCGCAATCGA 327 30 100.0 37 .............................. CTGCATGATATCGTCAAACCGAGTGACGTACCGACGC 394 30 100.0 35 .............................. TGCAATGGGTTGCCGGCGACGTCGGCTGCATCCCC 459 30 100.0 35 .............................. GGACCACCGCGTTGCGACGTCGGCGTCCGTCGTCG 524 30 100.0 35 .............................. GGTCGAATTGGAGTCATTTGCCACTCGGTAGAAAT 589 30 100.0 33 .............................. GATCATTACCAAGACTGGGAAAAGGCCCTGATC 652 30 100.0 35 .............................. GTCCATTGCTACATAACTACCAACGGGCTACCACT 717 30 100.0 34 .............................. ATCCCAGCCACAAAACAATTGTGGAGCAAGCTGC 781 30 96.7 36 .......................C...... ATGAACAGCCGAAGGGGTTATAATACAGTCAGTCAC 847 29 90.0 0 ...................-A........T | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 99.0 35 GTTTCAGACCAACCCTCGTGGGGTCGGAGG # Left flank : | # Right flank : TTGTTATTGTCTGACGTAGATTTATTTGACCCGGATAACCTGTATAACACGTATGATTCATAAAACCCGCATTGCACAGGTGGTGACCTGATGCGGATCAACGTCGCGATGCAGAAAGGAGGTGTCGGTAAAACCACCACAAGCATCAACCTCGCCGGTGCGCTCGCCGATCGAGGCCACGACGTACTGGCAGTCGACGCTGACCCACAAGGCGGCCTCACACTGAAGCTCGGCTATCGCGATCATTACCGAGAAGCAGAGTTCGCGCTTTACGATGTCCTCTCTGACATCGGGCAGCTCACGTTGAACGACCTGGACCAATTGATCGTTGAGGGTTCTGAATTTGATATAGTCCCCTCTCATTTACGCAACTTCCGGCTTGAGAAGCACCTCTACTCAGAGGCACGCGGCGTCGAAGCCCTGGGGATCGCGTTAGACCGCCTCGAAGAAGAGTATGACTACGTCGTCATTGACTCGCCTCCGAACCTCGGGCCACTCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACCAACCCTCGTGGGGTCGGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //