Array 1 21044-20751 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJW01000005.1 Halorubrum sp. CSM-61 Contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 21043 30 100.0 36 .............................. ATGGCGCAGAAGCACGCCATCATGCACACCGAGGAC 20977 30 100.0 37 .............................. TCACCCCCGGATGCGATTTGGGCGACGCGACTCCGCC 20910 30 100.0 34 .............................. GACGGCGACTATCAGGGGTCGCCGAAGTCGCTCG 20846 30 80.0 36 ...........G....C...A.A.....AT CTTAGACACATATCTTAGATGAATATCTTAGGACTA 20780 30 73.3 0 ...A......GC...G....A.A...C.T. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 90.7 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : ACGGTCGATCATCCCCGGCTCGATCGGAAGGTGAGCTATCAGTACCTTCTGCGATTGGAGGCTTATAAGCTCAAAAAGCACCTTCTCGCCGACGAGCCGTATGAAGCGTTTCGGAGGTGGTGGTGATGTACGTCGTGTTGGTCTACGATATGGAGGCGGAACGAACTCAACGAATGTTGAAACTCTGCCGACGCTATCTCACCCACGTACAGAACTCGGTGCTCGAAGGGCACATCACTGAGGGTGATCTCTCAAAGCTCGAAAATTCTATCGACGACCTCCTGATAACCGGTGAGAGTGTGATAATTTACGAGCTTTCGTCAGAGACGCTCCTCGATCGAACGGTCTACGGCGACGACCCTACCGAAGACAGGCGATTTCTCTAATCAGCACAGACAGCGACCATCGACCCCAGGGGGGATCGGGGGTTATTGCGGGTCGACGGAAACGCTTGTGTGTATGTAGCCAGTATAGCTCTTGTGGCGTTCGAATCTGCCATG # Right flank : AGCCGGACGAGACGGAACCGGAACGATCCCACGACCCAGCGCGGTAGGCACGAGTGGATATCTGTAGATGATATCTAGTAACTCTCCGATCCACGCTTCCACCGTGATCTGTCTGTGCTATAATCTCCGTTCGATTTTCGCGTCGGTAAGTCTGATACCGGCATCCGGTCGCGGTAGAAGTCTCCTCTCGCAGATCCGTTTATATCCGTCCGCCGCGGATCCGACGTATGGACCGGACCGACACCCTGCTCTTAGGCGTGTCCGGCGTCGTCGCCGCGCTCGTGTTCGCGGGCGCGCTGTCGGCGGGGGCGCTGTTCGGCTTCGACGAGTCTCCGACGCGCCCGATCCGGCTGCTCGCCGCCGAGCCGCTGGCGTGGATCGTCGTCGCCGCACTGCTCGTCGCCGTCGTCGGCCACGCGTACATCGACTGACCGGGGATCTCTCCCGCTCTCGCCGTCACTCCTCGGCGTCGACCTCGCGAATCGTTCGGACCAAGGCGT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 31008-35265 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJW01000005.1 Halorubrum sp. CSM-61 Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31008 30 100.0 35 .............................. CCGTGAATCTGCTCGCCGGAGGCGTTGAAAAACTG 31073 30 100.0 35 .............................. GCCTCACCGCCGATGCCGAGTACGGATGGACCGCG 31138 30 100.0 36 .............................. GGGGTGTTGTGTCCGTGAATCGGTTGGTGAACGTGC 31204 30 100.0 35 .............................. CGAGACGCGCACGCCACCGAGATGTTTCAGGGCCG 31269 30 100.0 34 .............................. AGCTCCATCTCCGCGACCATCGACATGAACTTGA 31333 30 100.0 34 .............................. AGCTCCATCTCCGCGACCATCGACATGAACTTGA 31397 30 100.0 36 .............................. CTCGGAGAGGTGCGCGATCTCCCCGCCGCGCATCCC 31463 30 100.0 35 .............................. AATATCGTCGGTCTCCCACTCGTCGTCGATACCAT 31528 30 100.0 33 .............................. GCCGCGAAGGGTGACGGTGTCGGTGCCGACGTT 31591 30 100.0 35 .............................. GACGTGGACAAAGTCCGGGAGTCCTGCGAGAAACA 31656 30 100.0 34 .............................. GCCCTCCCCAGCAGTGCCTGCCGGAAGTTCTGCG 31720 30 100.0 35 .............................. GCGGGCTGCGCGCAGCCCGATCAGCGCGACGACCG 31785 30 100.0 35 .............................. CTCCACGCGCACGAGATCGTCGTCGACGTACCACT 31850 30 100.0 35 .............................. ATGTCGTAGAACATCACGCCGTCGCCGAGCTGGTC 31915 30 100.0 35 .............................. AATATCGAGGTTCGTCTCGGCACCCGGATCGGCGA 31980 30 100.0 34 .............................. CGGAACTCGCGTTCCACCTCATCGAGGAGGCCGC 32044 30 100.0 36 .............................. AGGGCCGGACGCACGAACCCCACGCGGCGGCGGCGC 32110 30 100.0 36 .............................. GACCACTCGCCGGCCGTCTGGTTGTACTCGAACGTG 32176 30 100.0 36 .............................. GGCGACCGGCCGCTGGTCTGCCTGACCGACCAGTAC 32242 30 100.0 34 .............................. GACTACTACCTCCGCGGGGAGGATGTCGACGTTG 32306 30 100.0 35 .............................. GGCGACCTCGTCGTACTGCATCCCGCGCTCGCACG 32371 30 100.0 35 .............................. TCCGAAAGCGCCGAACAGCGGTACTACATCGAGGT 32436 30 100.0 34 .............................. CCGCACTCGTCGCACAGATGGGGCTGAGCCTCCC 32500 30 100.0 35 .............................. AGTTCGTCACGGGTGACGGTCGCGCTTCCGTCGCT 32565 30 100.0 33 .............................. GGAGTCGCCACCGTCGTCACCATCTTCGCCGTC 32628 30 100.0 35 .............................. CTCGTCGAGAACCTCGCTCCGGACAACGGTGATGG 32693 30 100.0 36 .............................. GAGCTCCACGGCGCCGATCAGCCCCAGGAGGAGGCG 32759 30 100.0 34 .............................. CGCGGCTAGCGGGTCGTCCCGTGACCGCATGGCG 32823 30 100.0 34 .............................. TTTCACGGCTCGCCCTCCTGCTCGACGATCACGA 32887 30 100.0 36 .............................. CCCGAGGTGTCCGCATGAGCGACCCCGACACCCCGA 32953 30 100.0 37 .............................. ATCGAGAGCATGGACCTGCCGACCATCCAAAACGACA 33020 30 100.0 35 .............................. GTGGCCCCGTCGCGTCTCGAACGAGGACGCCGCAG 33085 30 100.0 35 .............................. GGGTGGGTGGGGTGGGTAGTCAAAAAGCGATACGC 33150 30 100.0 35 .............................. CGTTATAACACACGGAATGTCTACCGAAAAATCTT 33215 30 100.0 34 .............................. ACCGTGCCCGACGACGGGACGGCGGTGTTCGTCG 33279 30 96.7 35 C............................. TTGCCGCCGCCCAGGTTCGCCCCGTCGAGCGTCTC 33344 30 96.7 35 C............................. GCCCGGCGCGCGGACATGGAACACCCGATCAACCG 33409 30 96.7 35 C............................. ATCCCGATGATGCTGCTGACGCCGATCGTCCGGGT 33474 30 96.7 35 C............................. GACATCGAGGACGAGGAGGTCGGCCTCTCCGACGC 33539 30 96.7 34 C............................. GGCGGTGTTCGTGCTGATGAACGTGAGCGCGAAG 33603 30 96.7 35 C............................. GTGGAGCGACACCTGGCGGTCAAGGTCGCTGTAGG 33668 30 96.7 35 C............................. GGTGTCGACGACCGCCCACGGGTCGGAGTACCCCG 33733 30 96.7 35 C............................. AAGGAGAAGTACTTCCAGGAGCGCGGGTCGAACGT 33798 30 96.7 36 C............................. GACGTCGAGGACTACCTCGAATCGTCGAAGTACGCA 33864 30 100.0 36 .............................. CTCGTGTTCGTCATGTCGATCCGAGCCGTCGCCCGA 33930 30 100.0 35 .............................. ACGGCGTCAATCACCCAAACGGGCGTGCAAGAGGT 33995 30 100.0 37 .............................. TCCTCTACGTAGACCTCTACGGTCTCGCCGTCCTCGG 34062 30 100.0 34 .............................. CCGCCGGATGCCCCGGTGAACAGGGGCCGGCGGA 34126 30 100.0 34 .............................. CATCCGCGGGAGCGTGGTGTTGTACAGTACGTCT 34190 30 100.0 36 .............................. TCGGAGCCGACCGAGTAGACGACGCCGCCGGTGACG 34256 30 100.0 36 .............................. GACCACCTCGAACTCGCTCTCGAAGAGCGAGCGGTG 34322 30 100.0 35 .............................. CCCGTCTCGGTGGTCACGGTCATCGAGATCTCTCC 34387 30 100.0 34 .............................. GCCCTCCTCCACCGTCGTCTCGGTGGTCGGGTCG 34451 30 100.0 36 .............................. CACGACGACAGCCGTCGCTGTCGCACTCGCAACGGT 34517 30 100.0 36 .............................. CGCAGCGCAGCGCGGAACGTCTGCTCGGAGGAACGC 34583 30 100.0 35 .............................. AACCCCCGGTCGAAGACCGCGAACGACGTCACCGC 34648 30 100.0 33 .............................. GCGGGACCACGACCTTGACGTAGTAGAGCGGAA 34711 30 100.0 35 .............................. AAGATCGAACTAGACGACGAGGAGGACGGCGAGGA 34776 30 100.0 36 .............................. GACGAGGTCGTCGCGACGATCGTCGTTGCCCTCCGC 34842 30 100.0 37 .............................. ACGTCGCGCTCGGGCGTCGGGATCACACTCGCGCACC 34909 30 100.0 36 .............................. GACAATGAGTAAGAGATTAAACGAGCTAAAGGCGAA 34975 30 100.0 35 .............................. CCTCCAGTACTCGACGACGTGGCTCGCGTGCTCTG 35040 30 100.0 35 .............................. TAAGGTTCCGTCGGATCACAGGACATCGAGGGCGC 35105 30 100.0 35 .............................. TCGGTCGGGATGACGTACTTCATCGCCCGTGCCGC 35170 30 96.7 36 ......................A....... GGCCACTCAATGGCTTGGACGGTTTCGTAGTAGATG 35236 30 76.7 0 C................A.CA.A.G...T. | ========== ====== ====== ====== ============================== ===================================== ================== 66 30 99.1 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCGCGGAGCTTGTGGTGGTACGCGTTATCGTAGGCCGCGTCAGCTCGCGCTGAGAGACGGACTACGACGCGCATTTGAAACAAGTCGTCAATAGATTATGTTGTTGCAGTAGCATTTCATTCCGATTCGAGATAGTCAGGAAACCTGATAAAAATTTCCCAACTAGTATCATATTCCCGTGTAGTTCTCTCGAAGCTCCAACCACGCTCACAGACCAGAGTGTCACAACCTCGCTCCGGGCTACCGAGTATGTTTAGGCGGGATACCCGGATACTTCGGAACCGTGGTGTGCACCGGTGATCCGAGGTAATCTCTGCAACTGGAGACGACACGGTGTCATTGACAGTAGACGCAAAACCGTCTCAATCGTCAGCGATCGGTATCCCGAAACCCTCCGAAGTGTCGTCGACCCCCGGGGGGTTTGGTGACTATTGGAGGTCGACAGAAACGCTTGTGTGTGAGCAAGCAGTAGCCCCTCTGTGGCGCGCAAATTGGCCACA # Right flank : CGTAAGGAAGGTTGAACGAATCTATTAGAGCCAGGGCAGGGATTTGAACCCCGGAAGTCTCGATTACAAGTCGAGTGCATGAACCGCCCATGCTCCCCTGGCGCAGGCGGGCGTACTCGGTCCTCCTATGAGTGCGTGTCGCTTTCCGCGAAGGTCACCCGCTGTCGGCGGCGTCGTCGTGTCGCGATCCGCCGCTCGGGTCGCCGTCGTCTCCTTCTCCCTCTCCGCCCTCCGCCCCGTCGCCCGCCGCCAGCGACTTCGTCAGCTCCACGCGGTGCGGCTCGTAGCCCCGTTCCGCGTAGAACTCGCGGGCGCGGTCGTTGGCCGCGAGCGCCTCCAGCGCAACCGTCTCGGCGCCCGCCTGGCGGAGGGCTCGCTCGGCCGCCTCCAGTAGGTCGGCGCCGATCCCCTCGCCGCGGCGCTCGGGGACGACGAACAGGTTGCTCACGACCCCCCGGGTGCGGTCGCGGTCGTAGCCGCCGCGGTCGAGCGCGAACCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //