Array 1 328504-325695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028108.1 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 328503 30 100.0 37 .............................. AGCAGTTAGAAAATACTTAGGATTAAATTAAGGAGGA 328436 30 100.0 36 .............................. GCATTTGCTGTCTCAGTTCTTCAGCATTAGCTTCGA 328370 30 100.0 37 .............................. GTTATTAAAAATAAGCTCATAGGCTTACTAATGACTA 328303 30 100.0 37 .............................. TTAAAGTATGCAGTACCCAAAGCATGTCTTGGATTCT 328236 30 100.0 34 .............................. TACTTTTCTAAAGTAGAAAACATCACAATTTCAA 328172 30 100.0 36 .............................. GCAGAGCTAGAAAATTTGATTAATCAAAAAGTTGAG 328106 30 100.0 37 .............................. GCAAAATATTTTTATTTAACATTTTCAGTAATATGTA 328039 30 100.0 36 .............................. AATTTTGAATAAAAAATATTTCCTTTTTCTTTTGAC 327973 30 100.0 37 .............................. TTTCAAAAGTTTTTCCAGCTCCAACTACATGAGCTAA 327906 30 100.0 37 .............................. AAAAAAAATAAATTATTAAAGGGAGCTGGGATATACG 327839 30 100.0 36 .............................. CTTACTTCTCCTGCTATAAGTCTATCAGGTCTTTGC 327773 30 100.0 36 .............................. AGAAACCAATCCATATATAATCTTGTAAGTCCCTCA 327707 30 100.0 36 .............................. GTCATTTGTGAACTATCATAAATATCATTCCATACA 327641 30 100.0 36 .............................. TCTTGATAAGCACTAGCTTTTTCCATCATATTTCCA 327575 30 100.0 37 .............................. GATAATAAAGGAATTGTAAACTTAATGAACGATAAGG 327508 30 100.0 36 .............................. GCTGGAACAAAAATTTTAAGTCATGAAGAGTCTAAA 327442 30 100.0 36 .............................. AAGAAGTAAAAACTTTCTTACAAAAACAAGGGAATA 327376 30 100.0 38 .............................. CTCTCAGAATGGAATATAACAGAGCAAGAAGCTTTAAA 327308 30 100.0 36 .............................. AAGTTAGGGGCTATTGCTGAGTGGTTTCATAGCAAA 327242 30 100.0 35 .............................. CTGGCTGTGTTGAAACATTAACTAAATTAAAAAAC 327177 30 100.0 37 .............................. GTTTTATCTATAGTTACATATGGACAGTCTCTTTTTA 327110 30 100.0 37 .............................. TGTAAAACTTCATCAGCAGAAATCCATCTAGATTTAT 327043 30 100.0 35 .............................. TATTGATTGTTTTGGATCATTTCTATAACCAATTA 326978 30 100.0 36 .............................. AAGAAGTAAAAACTTTCTTACAAAAACAAGGGAATA 326912 30 100.0 38 .............................. CTCTCAGAATGGAATATAACAGAGCAAGAAGCTTTAAA 326844 30 100.0 36 .............................. AAGTTAGGGGCTATTGCTGAGTGGTTTCATAGCAAA 326778 30 100.0 34 .............................. TATTTAGCAGAGGCTTTTTATAGTAGAGCCTCTA 326714 30 100.0 37 .............................. TACTTTCGCCATACAGCTTTGATACTGTATAACTTTC 326647 30 100.0 36 .............................. GCTTGAATCTGCACAAGAGTAGTTTTGTTTTTTAGA 326581 30 100.0 36 .............................. TTTTGTTACCATTAAATTTAATCTAATTTTAGCTAA 326515 30 100.0 35 .............................. TAGTTCTATTCAAAGTATTTGTTTGTCTAATATCC 326450 30 100.0 36 .............................. GGTTGTATCTATATAAAAGATCAAGAAAAGGAAAGG 326384 30 100.0 35 .............................. GGAATAAATATAACTAACTATGAAAAATTAGATAA 326319 30 100.0 37 .............................. ATAAAATTAAACAATGGATTTATATTAGATGGAGCTG 326252 30 100.0 36 .............................. AGTAGCCTTATCGTCTATTAAAGTTTGAAATGCTAC 326186 30 100.0 37 .............................. GCTCTTTCTAATGAAAAGGTATCAGACAATCTTTTGA 326119 30 100.0 36 .............................. GGATAATTACTTAAAAAATACTCAGTTTTTTGATAA 326053 30 100.0 35 .............................. TCTAGTAGTAATTTATACATCTGATTATTTGGATG 325988 30 100.0 36 .............................. TTTTTTTCAGTGTTTCCACTGTTAATAATTTGTTTA 325922 30 100.0 36 .............................. CAAGTGCAGGGATAAAAACTTTGTTTGGACTTTCTA 325856 30 100.0 35 .............................. ATCAATTATTATCTAAATATGCTAAGTTTCTTAAA 325791 30 96.7 37 ...T.......................... TAATTTAGCCCTAAGTATTTTCTAACAGCTTGATTAG 325724 30 76.7 0 A..T........G......A.GT..A.... | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.4 36 CTTAAAGTATTATCATATTGGAATTTAAAT # Left flank : AGCTTTTCAAATGTGGTGGTGATAAAATGTATGTTGTTGCAGTATATGATATATCATTGGATGAAAAAGGTAATCGTAATTGGAGAAAAGTTTTTGGCATTTGTAAAAGATATCTTCATCATATTCAGAAATCTGTTTTTGAAGGAGAATTGTCTGAAGTAGATATTCAGAGATTAAAATATGAAGTTTCAAAATATATTAGAAATGATCTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAGATGGATGGAAAAAGAAATGTTAGGATTACAAGAAGATAAAACAGATAATTTTTTATAAAATTTTATTGTCTACCTTAGATAATGTAAAATTCTCAGTACTTCGACAAATATTATAAAAGCATTTATATTAAAAGAATTTTTTTTATATTTTAAAATCTAAAAATATTTAAATTTTTTATTTTTTAATAAAAGGTTCAGATTGACAAAAGATAGTAAAAAAAGTATTATATCAGAGTGAGATTTATAGCCTCGT # Right flank : AGAATTTTTTGAATAGACAACTGATACAGGAAAAATTCAAAAACAAACATATATAAATAAGTGATTGCTTTTTAAGAAGATTTATTATAGAATAGCACCAAGAGGTGATAATATGCTGGAAACTATTAATAAAAATCAAGTAAATGTAATATTAAATAAAAATACTGATGAAATAGCTACTTTAATAGAAAAACATAGAAATACTATGATTACTTCTAAAAAAATAATAAAATTAAAAAAATTATTTAAATATACATTAGTTATTATTGCTTTATCTTTGCTTATAATAGCTATTCCTTTGTACTTAGTTACTTTAGTTATATTAATTATAAGTAGTATTAGTATATTAAAATCAATTATTTAATAAAAAATAAGTTTTGTTTAAAAACTCTTATCAAAAAAGATAAGTGTTTTTTTATTGCCTAGAAGATTTATGGAAGAAATTAGAATTTCTTTTAGTTTTAAGTATTGTCTTATTTGAAGTTTTGATAATGAGATTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAAAGTATTATCATATTGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1091156-1092197 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028108.1 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1091156 36 86.1 43 AA.A..A................T............ GGAAATAGGAGCCTTTTGCTTAAATGATGAAAATTTTGTTAAA 1091235 36 100.0 41 .................................... GCAATTGATGAACTACCTAGCTGGAATCAACGAGTTGCAAA 1091312 36 100.0 36 .................................... CTAAGGAGTTAAAAAAATATATAGCCGAATTTATGG 1091384 36 100.0 45 .................................... TCTATTTAGTACAATTAAATAATAACTTAAATAAAAATATATTAG 1091465 36 100.0 42 .................................... AAAATTACATTAAATAATGTAATCTATCCATTAAATGCTATA 1091543 36 100.0 37 .................................... GTGAAAGCTCAGCTGTAACATTTGCACATGCTACTCA 1091616 36 88.9 41 ..............G.A.....CT............ AAAGAAGATGAAATAGTTGAATCTTTTCATAATATCCCTGA 1091693 36 97.2 41 ...............T.................... TCTGGTATTAGATTCTTTGAATACCCAGTAGTTAATTATAC 1091770 36 94.4 43 ...............T.......T............ CTGTTAATTGGTGGATTAAATTAAATGGACTGAACTTAGTTAT 1091849 36 97.2 43 ..................T................. TTACAACAGAGGAATTCGAGAAAAAGAAAAAAGAGTTATTAGG 1091928 36 91.7 40 A......................T.......A.... CAATGGCACTAAAGAAAGGAATGGACGTTGAAGAAATTCA 1092004 36 94.4 43 .......................T.......A.... ATGCCAAAAACTGATGGATTATCTACTGAAGAAGTAATCAAAT 1092083 36 97.2 43 ....T............................... AGTTAGTTATGTTAAATGTAATTCACTGGAAGAATGTTGCTTG 1092162 35 83.3 0 .....T.........T.A.....-.....C.T.... | T [1092182] ========== ====== ====== ====== ==================================== ============================================= ================== 14 36 95.0 41 GTTTCCGTCTCCTTACGGAGTATCATTCATTCTTAT # Left flank : TTAAATATAAAATCAAATGGTTTCCGTCTCCTTACGGAGTATTATTCATTCCTATTAGAAAAAATATTTGGAGTAAACTATAAAGAATATCAGTTTCCATCTCCTTATGAAGTTATATTCACTTTTATACTATATTCAAAAAAGAATTGTATCATAATAAATTTTTAGAATATTACCATCTGGTATTTTTATTTTGAGAATTTTTTGATTTATTTAAAATAAAAGTATATTTAACTCCTCATTTTTTAGATATTATTCAATTGCTATCTTTTATCTAATTTTTCAAGAAATAAAGGCTATGTAGAACAAAAAAAGAATTTTAAATTTTAAAAAAAATTCTCTTATTCATAAAAATTCAAAAGGCTCTGTAAGATTATTCTCATCTTTAAAAGTAAAAACATTTTTCACTTTTAACTTCTACTTCATCACCCCATTAACTATTACATTTTAACATATAAAATTTTATTTAATAGAAATTTCTATTTTTTAATCATGGTAAC # Right flank : TACTATATTCAAAAAAAATCTTTTATTGCAATATTTTTTTAGAATGTTATTGTGTGATATTTTTATTTTTGAGATTTTTTATTTATTTCAAATAAAAGCATATTTAACTCCTCATTTTTTAGATATTATCCAATTACTATCTTTTTTCTAATCTAGAATTCTATATATTGTATCCTAGCATCTTTTATCTAATTTTTCAAGAAATAAAGGCTATATAGAACAAAAAAAGAATTTTAAATTTTATAAAAAATTCTCTTATTTATAAAAATTCAAAAGGCTCTGTGTGATTATTCTCATCTTTAGAAGTTAAAGTATTTTCACTTTTAACTTCAATTTCATCCCCTCATTAACTATTACAGTTTAACATATAAATCAAATTTTTTTATAGAAGTTTAGATTACTTAATTATGGCAACAATACCGTCTCCTTACGAAGTATCATTCATTCTTATTGTTATAGCTGGTACTTCTTGTTCAAGAGATAATGTTAATGCGTTTCCG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCTCCTTACGGAGTATCATTCATTCTTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 1094772-1092613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028108.1 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 1094771 35 100.0 38 ................................... TAAAATTAAGGAAGAATTAGGGCTTGGAGATACTTTTA 1094698 35 100.0 42 ................................... TTTATATAACCATTGTCAACCAACCAAAAATATAACATTTGA 1094621 35 100.0 39 ................................... TAGACTTGTTAGAAAATTGTACAGAACATCCTTATAATA 1094547 35 100.0 43 ................................... TTTTAAATCCGTGAAAAATATTAAAATTTTCTGTTTCTTTCAT 1094469 35 100.0 35 ................................... TTTTATGGAAGAAACCTTGTAATAATCTATTCATA 1094399 35 100.0 37 ................................... TTACCTATATAAATAACTTCCCCTGCTCTAATAATAG 1094327 35 100.0 39 ................................... TGTTGAATTTATTAGCTTTACATCCCCCTTTAATACCTT 1094253 35 100.0 42 ................................... TAATAGCTATTACAGTATTATATGATTGAAAAATTAAATCTT 1094176 35 100.0 38 ................................... TAAGAATTTCTCTTGTGTGGTTAGATTTTTGGATGTGA 1094103 35 100.0 41 ................................... TTTCTTTTCTCTTTAAAACTTTTCTAAGATATTCATCAAAT 1094027 35 100.0 37 ................................... TTTGATATATTTTAATGTTTCATTATCAAGTTTTTCA 1093955 35 100.0 38 ................................... TTTCTACACCATAGAACTATATTATCCCCAGTGCTATA 1093882 35 100.0 40 ................................... TATAATACAATAGAAGATATAGTAAATGCTACAATATTGA 1093807 35 100.0 41 ................................... TATTTAGTTAAGTCTAAATAGAAATTAAGCTCTTTTGTCTT 1093731 35 100.0 43 ................................... TTTTGAAATTCATTAGGAGTATTATGACCTCTAGATGTATCAA 1093653 35 100.0 42 ................................... TTCATTTTCTCTTTTTAATGCTTGTAAACTTACATACTCTAA 1093576 35 100.0 42 ................................... TATACTTCCACTTTTAAATTTTATCATATTAAAGCCTCCCTT 1093499 35 100.0 43 ................................... TTTTACCAATGTTCTTTTAATATCCATAAAAGGATAAGTACAA 1093421 35 100.0 44 ................................... TAAATTTAATATTTTTAATTAATTATAACCATTTTTACCAGTTC 1093342 35 100.0 39 ................................... TCCATATAGAAATTATTAATGTTATTATCAGTAGTATCA 1093268 35 100.0 43 ................................... TTAAGTAAAAATTCTATAAGGAGATATACTATGAACGAAACAC 1093190 35 100.0 43 ................................... TTATTTTTATATTGATAGCCTATTATAAATTTTTGTGTACTTC 1093112 35 100.0 41 ................................... CAATCCACCATTGTTTTTAACCATTTCTTTTAATTCACTTA 1093036 35 100.0 41 ................................... CTTTATATTCATTTTTACCTCCATAAAATTTAATATTTTTT 1092960 35 100.0 43 ................................... CCCTTTACCAAATCTTAAATCTTGAAATAGAAAATTACTATTC 1092882 35 91.4 46 ........A...A.......A.............. CTTTTCTTTGAATATATGACTGTTTATAATTCTTATATTGTTTCCA 1092801 35 97.1 41 ...................T............... CAATCCACCATTGTTTTTAACCATTTCTTTTAATTCACTTA 1092725 35 94.3 43 .....................C....G........ CGCATTAACATTATCTCTTGAACAAGAAGTACCAGCTATAACA 1092647 35 91.4 0 ..................T.............T.T | ========== ====== ====== ====== =================================== ============================================== ================== 29 35 99.1 41 ATAAGAATGAATGATACTCCGTAAGGAGACGGAAA # Left flank : ATATTATTTCAAATAAGAGAAGAACACAATTATCAAAACTTTTAAGTGCTTTTGGTTTTAGAATACAAAGATCAGCTTTTGAATGTTTATTAACAAGAGAAAAATATAAGTTACTTGTTGAAAGAATTAATAGATATGCTAAACCTGAAGATTTAATAAGAATTTATCGTTTAAATCAAAATGTAATAACTGAAATATATGGAGAAAACTCAGAAGCAGAAAATGAAAATAAAGCTTATTATTTTTTCTAAAAAAATAGAATCTCTCAACTAAGATTGGGAGATTTTTTATTTGTTGAAAATTTAAATAAAACATGTTAGTATGTAACATATACCAAGAGAAATCCTAAGGTTATAAAAAAATATTAGTTAGACGATATTCAAAAAAAGAGGAGTTAAAGATGCTTTTAACTGAAATAAACAAAAAAAATTCAAAAATAAAAATATCATACGATAACACTCTAAAAAATTATTGCAACAAAAGACTTTTTTGACCATAGG # Right flank : TGTTGCCATAATTAAGTAATCTAAACTTCTATAAAAAAATTTGATTTATATGTTAAACTGTAATAGTTAATGAGGGGATGAAATTGAAGTTAAAAGTGAAAATACTTTAACTTCTAAAGATGAGAATAATCACACAGAGCCTTTTGAATTTTTATAAATAAGAGAATTTTTTATAAAATTTAAAATTCTTTTTTTGTTCTATATAGCCTTTATTTCTTGAAAAATTAGATAAAAGATGCTAGGATACAATATATAGAATTCTAGATTAGAAAAAAGATAGTAATTGGATAATATCTAAAAAATGAGGAGTTAAATATGCTTTTATTTGAAATAAATAAAAAATCTCAAAAATAAAAATATCACACAATAACATTCTAAAAAAATATTGCAATAAAAGATTTTTTTTGAATATAGTATAAAAGTGAATATAACTTCATAAGGAGACAGAAACCAAGCAACATTCTTCCAGTGAATTACATTTAACATAACTAACTATAAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAATGAATGATACTCCGTAAGGAGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //