Array 1 7-889 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWO02000037.1 Indibacter alkaliphilus LW1 Indibacter_contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 7 46 100.0 30 .............................................. GCTGACGATGTTATCTACAATGACCAATTG 83 46 100.0 30 .............................................. CTGTTAGTGATATTCCTACATTACCACTAA 159 46 100.0 30 .............................................. ATCGCCTGTGTCACCATCACCCCAGGGCAC 235 46 100.0 30 .............................................. AGTCCTTTATGGCCTGTTCGACAATTCGAT 311 46 100.0 30 .............................................. GGATTTCCTTTTGCATTGGAAATACCTGGT A [330] 388 46 100.0 30 .............................................. AAGAAGAATACATCAATGCCGAGCTGGACA 464 46 100.0 30 .............................................. ACGTTGGAGTGATAACACTAAAATTATATT 540 46 100.0 30 .............................................. CATAAGCTTAAAGACAGGCAGGAAGCGGAG 616 46 100.0 30 .............................................. TGACGGGGTGGATTATGACCCCTCCAAGAT 692 46 100.0 30 .............................................. CCAACAAGCTCAGAGAAGCAGGGAAGTTCC 768 46 100.0 30 .............................................. ACTGAAATAGACATCCTCATCACGGATGCG 844 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 12 46 100.0 30 GTTGTGAATTGCTTTCAAATTGATATCTTCCCAAGGGAATCACAGC # Left flank : TGATCCG # Right flank : CATACCCCACCTTAAGTGGCTGGTATGCTGTTTTTTATGATTGAAATTAGAAAATAAAAATATTGCTTTTAAAATGCGAAATTGAGTCAGACCTGACAGGTTTTGAAAACCTGTCAGGTCTAAATACTTTCAAAACAACTCCAACTGTTGTGAAGGAGGTTCTGTCTCCTGCTTACTTGTTCCAAAAAATACCTCCATCATTCCAAACTGTTTATCGGTTATGGACATGATTCCAACCTTCCCCTTAGGAGGAAGGTTCTTTTTAGTACGCTTAATATGAACATCTGCGTTTTCTCTACTTGCGCAAAACCGCATATAGATGGAAAACTGAAACATGGCAAAACCATCATCCAATAGTTTTTTACGGAAAGAAGTGGCTATTTTCCTATCCTTTCGGGTTTCAGTGGGCAAATCAAAAAAGACTAGCACCCACAAACTCCTATATTGATTAAGTCTTGAAAAATATTTTTCATCCATATTCAGGGTAAATGATTTTTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTGATATCTTCCCAAGGGAATCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 79816-77461 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWO02000027.1 Indibacter alkaliphilus LW1 Indibacter_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================== ================== 79815 30 100.0 36 .............................. ATATATACAAAATGGATTTAAGGATTGGGACAAATT 79749 30 100.0 36 .............................. TTGATTTTCAGGGACTCGATGCGGGCAATAACAATA 79683 30 100.0 36 .............................. TTGATAGGAATGAAGCCAATTAAGATATTGGATTCT 79617 30 100.0 36 .............................. CTTCTCAATCAGGCGCAGCTTATCGCTGTCAATGAA 79551 30 100.0 36 .............................. AAGACAATGAAAGCCTTATCGGAGATCTAGACAATC 79485 30 100.0 36 .............................. AAAATTTCAGCCAGTTTAATAGCATCTTCAAACTTG 79419 30 100.0 36 .............................. ATAGGATTTCCCTGTTCGTCTGAATCAGCAACCCAA 79353 30 100.0 36 .............................. ACAATGACTGTACGGGTGATTTCGTAAGGAACCTAC 79287 30 100.0 37 .............................. CCACCCCCGTAGCAGATGGAACCAAGACTGAAGCAGG 79220 30 100.0 36 .............................. TATTTGAGCTCATGTTAGGAACTTGTGGAATTATCG 79154 30 100.0 35 .............................. ATGATGTAACCCTTATCTTAACCGCTGATCGCTTA 79089 30 100.0 37 .............................. CATATTACTTTATCGACATCTGAAGGGGTCAAACCTT 79022 30 100.0 36 .............................. TCCTGCTTTTTATGTCAACGTCCTTTACAATGAATA 78956 30 100.0 37 .............................. GCCGAAATAAAAATCTGACTTACTATTAATATCAGGT 78889 30 100.0 36 .............................. AGTATGCATCCAAATGCCTTTCGGGATCAATTTTCA 78823 30 100.0 36 .............................. TGTCGTAAGTTCCTCCGGAACCGGCTACGGCAAGGG 78757 30 100.0 36 .............................. TCAAATGCCATAATGTTATATTTTTTGAGCCAAATA 78691 30 100.0 37 .............................. GTTCTTTTCACAGATAAGTCCATCTACGGTAGTGATT 78624 30 100.0 36 .............................. GACCTTAATGCTATCTGGTGAAACTTTGCCATGTGC 78558 30 100.0 35 .............................. ACCCTGTCATAGACCCTTTGGCTGCCAGTGCATCA 78493 30 100.0 35 .............................. CTGTATGCAAAAAGTGTTTCTTTTTCAGCCTCAGT 78428 30 100.0 36 .............................. AAAATTGTGGCAAATCCTGCCGTGATCACCCCTACA 78362 30 100.0 36 .............................. ACTACCGTGGTTGGTGAAAACGTTATTGGAATCCTC 78296 30 100.0 37 .............................. TATAATACCAATTCAACGATTGATATATTGTTCCTAT 78229 30 100.0 36 .............................. AAATCAGATGCAAAATTTCTTACTTCAAAATCAAAA 78163 30 100.0 37 .............................. ACTTCTGGGAGTTCTTGGGGCTTTGTTTATCGAGCTG 78096 30 100.0 37 .............................. CTGTTAATGCTTTTCGGGATGGAATAAAAGCAGGCGG 78029 30 86.7 84 .........................AGG.C CGAGCGTTTAGAAAACCTTCAGTGAAGGTTTTTAGCGAGGGGCCAGGTTGAAGGGTAGGAAAAACACATATATTACAAATCAAC 77915 30 100.0 36 .............................. ATATATACAAAATGGATTTAAGGATTGGGACAAATT 77849 30 100.0 36 .............................. TTTGGAAATCTGATTACACGAAACAGCAAAACAGTT 77783 30 83.3 83 ..............G..........AGG.C CGAGCGTTTAGAAAACCTTCAGTGAAGGTTTTTAGCGAGGGTTCAGGATGGCGGCAGGAAAAACACATATATTACAAATCAAC 77670 30 96.7 36 .............A................ GGATCCAAGTACCATACTCAGGCATTTCCCTAAAAT C [77667] 77603 30 90.0 82 ..........................GG.C CGAGCGTTTAGAAAACCTTCAGTGAAGGTTTTTAGCGAGGGTTCAGGATGGCGGCAGGAAAAAACTCACATAACAAAACAAC 77491 30 73.3 0 T..........GA....TT.......GCG. | C [77485] ========== ====== ====== ====== ============================== ==================================================================================== ================== 34 30 97.9 40 CCTTCAATCGCACCATACAGGAATTGAAAT # Left flank : AAGTGAAGGTTTTTAGCGAGGGGCCAGGTTGAAGGGTAGGAAAAACACATATATTACAAATCAC # Right flank : CTTGAAACATGATAGCAAAATACCATCAGAATAAATTATGCTTATTTCAATTTAAACTGCGTCAGTCTGTCAATGAAAAAATATTCCAAAGTATCGCTATTATCAAAATTAAAACCGATAACCTCTCTACCAAATGACTTAATCATAATGTTGTTTTTTGTCTATTCTATTACTCTCTCAAAAATCCCAACAACCCTAAAGTCCATTAAATCATCTTCGTTAAGAACAATATCTGAGTATTCCTCATTGGTTGAAAGCGGCTTTAACACAATGGATTCATGGCTCCATTCCCCTTCGGATATTTTTTTTACGCTTTGATATTCTTTTACAGTATATCCTGATCCAAAATCTGCATCCTGAACATTGGTTGATTCAACCAAAACAATTTTACCATTTCGAGATCCTCCCGAATAACTCTTGAATAAACAAAATGAACCGTTAGGGATACGTTTGTTCATAGATTCACCAACCACTTTGCATATAAAATCCCCTTCACTAAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAATCGCACCATACAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 654-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWO02000016.1 Indibacter alkaliphilus LW1 Indibacter_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 653 44 80.4 30 A..A.C..G..AA.--..........................T... TACGTTATGGAACGTTTGACAAACGTAGCT T [648] 578 46 100.0 30 .............................................. TTATTTGTTAAGGCTTCTAAGCGTGTCCAT 502 46 100.0 29 .............................................. TTGCGGTGCGCTTCTATATGCTTCGGTTA 427 46 100.0 30 .............................................. TTCAATGTGACATCATACAGCGCATTGACC 351 46 100.0 30 .............................................. GTAGGCAGACTATGTCATGCTATTCCTAGA 275 46 100.0 29 .............................................. AGCATAATGGTAAATGTGTTTACTCTGAT 200 46 100.0 30 .............................................. TTAGACATCATAATCTTCCTCCATTTCTAA 124 46 100.0 29 .............................................. GTTTTAATGTGGTTTTACATTGTTAGCAA 49 44 91.3 0 ....................................C.--.....G | ========== ====== ====== ====== ============================================== ============================== ================== 9 46 96.9 30 GTTGTGAATTGCTTTCAAATTGATATCTTCCCAAGGGAATCACAGC # Left flank : AAAGATATAGCGTTATAATTTAAGGTTCTGGGACCCAAAGTGTTTTATTGGGTTAGAAGTCCACAATACTGATGCTTTTCTTAAGAGATTCCGGAAGCTTTTACTTGATTGAGTTTAATCGATTAGCTAAAACTACCCGTTGAATTTAAACTTTTCCAAAGTTTGATTAAAAGGATAAGCAACCACAATTGACAAAACTGAACTTTGGAAAAGTTGCCCTGACCAAATGACATTGAATAGGAATAAGACCTGGCAAGTTTCAAAAACCTGACAGTCTCTTTCAAGCTGTGAATTGCTTTTCAAATCGACCAGAGGGAGATTCATGAACACCATTGAAAAACATTATCATAGTGAATAAATTGATATCTGCAAAATAGGTCCATTAATGATTATAGTTATTGCCAGGACCTATCAGGTTTCAAAAACCTGACAGTCTCTTTCAAGCTGTGAATTGCTTTTCAAATCGACCAGAGGGAGATTCATGAACACCATTGAAAAAC # Right flank : GGGATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTGATATCTTCCCAAGGGAATCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 2957-3913 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWO02000003.1 Indibacter alkaliphilus LW1 Indibacter_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2957 30 100.0 39 .............................. CCGGCCAGGAAATCTTAAACGGAATGGTGGTCCGGTCTG 3026 30 100.0 36 .............................. AAGCCCTGCTCTTGGTCATCAAGGCGGCCATGATCG 3092 30 100.0 35 .............................. AGATCCGGGAACATTTCTGGAAGCCTTACAACAAT 3157 30 100.0 37 .............................. AAAACAACGGGTACCCCCTACAAAAAATCCTTGATAA 3224 30 100.0 36 .............................. AGTGCTCAGGGGCTCTCTTAGCTGCCTCCAACTGTG 3290 30 100.0 35 .............................. TGTCTTATCTGTTTACCCACACACTTTTCACCCCC 3355 30 100.0 36 .............................. TAAATTTTGCGGTCAAAGAAGAGACCAGGCTTGAGT 3421 30 100.0 35 .............................. CAGTTTGGAGGAAGGATAGAGCTCATTCCAAAATT 3486 30 100.0 37 .............................. TCAAGGTAGATGTTCAAATGGATTTCATCACGCTTTT 3553 30 100.0 36 .............................. TAATCCTCTGATCATTAATGTAATCGGAGAATGTCT 3619 30 100.0 36 .............................. CAGAGCAGTCCAGCAACAGGGCTGTCTTTTTTACGC 3685 30 100.0 36 .............................. TCGACGCCGAGGACATGTCCGACGAAGCAACCTATC 3751 30 100.0 37 .............................. ATCGCTCCTATAACCTCCCTTCCCTGAGCAGGGCTAA 3818 30 100.0 36 .............................. ACATCTGGAGGCCTGGCTGCTGGCAATCGAAGAGCA 3884 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 100.0 36 CCTTCAATCGCACCATACAGGAATTGAAAT # Left flank : TCAATAATTCAGTAATTCAATTAATCAACCATGTACATCATTCTAGTTTACGACATTGGAGAAAGGCGAGTCAGCAAGATGCTGAAGCTTTGTAGAAAGTACTTGAATTGGATACAGAATTCGGTATTTGAAGGAGAGATCACAGAGGTGAAATACAAAGAGCTTATTATCCATGCAAAGAAGATCATGAAGATCGAAGAAGACAGCTTAATTATATTTAAAAGTCGGGAAGAAAAATGGCTGGACAAGGAAGTCATTGGCCAGGAGAAAAATGATCTGGACACTTTTCTTTAGTTGTCGAATGGAGTTGTATAAATAGTTTAGCTTTAGTCCCTAAGAAGAAACAGATCCTAACGAATTGATTTTAAACAAATTAAAAAGTTGTCGATAGTAACGGAAAAATCAGCTATTGGAGATCGACGCAATTATAGGATAATATTATAAAGTTAAAACAGTCATTTTGATTCAAAAAAGGCTATTTTAGTATGCCGTTCCGACGG # Right flank : TTTTCATCTACAGCAAAATCACTCACCTTACCTATACCTTCAATCGCACCATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAATCGCACCATACAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //