Array 1 101824-100758 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAEX01000010.1 Escherichia coli strain TZ40_S scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101823 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 101762 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 101701 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 101640 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 101579 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 101518 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 101457 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 101396 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 101335 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 101274 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 101213 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 101152 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 101091 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 101030 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 100969 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 100908 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 100847 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 100786 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127829-127373 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAEX01000010.1 Escherichia coli strain TZ40_S scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127828 29 100.0 32 ............................. CACAATTATTCGGTACGACGGGTTCAGGCATT 127767 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 127706 29 100.0 32 ............................. AATGCAGGGCTGGGATCGGGAAAAACAATTTA 127645 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 127584 29 100.0 32 ............................. GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 127523 29 100.0 32 ............................. CTCGATCAGGAAAATGAATTCCTGGAAAAAAA 127462 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 127401 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGACTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGTCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //