Array 1 1381-1895 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000015.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 1381 26 100.0 35 .......................... CCGCTCGTGTAACGCCGTGAACTTCTTTTGCCCAC 1442 26 100.0 35 .......................... CCGAGAAATGAAACAAATTCAATTAGCTCATTTAT 1503 26 100.0 35 .......................... CCGAAAAGCTGATGGCAGCGTGGGATAAAATGTAT 1564 26 100.0 36 .......................... CCGTTGCAATCTCAAAAGGGGATGTAGTATTTGTAC 1626 26 100.0 35 .......................... CCGACTACCTCCCGACAAGGATACGATGGAGATAG 1687 26 100.0 35 .......................... CCGCAAAATGCGGTAAAATAAGCAAAATAGAAATT 1748 26 100.0 35 .......................... CCGATTATTGAGCGATTAACACTGCAAGATTGGTA 1809 26 100.0 35 .......................... CCCCTATACAGGTACTCGAGACATAACTGGACGGC 1870 26 84.6 0 .....................T.TCT | ========== ====== ====== ====== ========================== ==================================== ================== 9 26 98.3 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CCTATGCCATATTTACGGCACAGTTCTTTAACCGGAATACCCGCTTCAGCTTCTTTTAAAATAGCGACAATTTGATGTTCAGTCATTTTTTTCATAATTAAATCCTCTTTTACTTTTATCATAGAGAATTTTCTACTTTTTTGCTGTACTATTTTAGGGGATAGTTACATTCTATATTAAACAATCGATAGTAATTCAGTGGATAATAAACCTTGTATGATAGTGAACGTGTGTAAAAAATATACCATAAATCAGTAGGGCAAAGCTCACGCTAATACGAGAGTAAAAGATAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTATTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAAATAGCTACAATTAGA # Right flank : TCAATCCATAAAATCCTTAATACCTATCTATAAAATATCGCATAATGCGGTTATCTACCGTTAACTCAGGGTGAAATGAACAAACCAAGATATTATCTTGTTGTGCCATTACACAATGATCATTAACGAAAGCAAGTTGTTTGACTTGTTTACTTGCTTTTATAATATACGGTGCCCGTATAAAAACAGCAGGAATTTGTTGACCGATTAGTTCAATATTTAAAAGTGTTTCAAAGCTGTTAATTTGTCGCCCAAAGCCATTGCGCTCAACACTAATATCGATTAAGCCAAGCTGTTCTACTTCATTATGTGTTGTGGTTTTACCGCAAAGCACAAGCCCTGCACAAGTTCCTAAAACTCCTTTACCTTGTTTAGCTAATTGTTTTATTGGCTCTATTAATCCATTTTGTTTTATTAAGCGACTAATAGTGGTTGACTCTCCGCCGGGAATAATTAAGCCATCTAAATTAGCTAATTGTTCGGGTTTTTGAACGAGTGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 593-740 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000036.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 593 26 100.0 35 .......................... CCGCAACCCTTTAATAAATCAGCTTTCCATTCGTC 654 26 100.0 35 .......................... CCGCCAATTAGTGCAGAATTAATTGAGGCATTTTT 715 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 3 26 100.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CATTAGATTACTGTTAAGTTTAAGATTTGCGGGGGTAAAAAAGTGTTTCCATACTTACTGTCATACCAATATACAGCTGATACGAGCCATAAGCCGAAGCAGTGATAAAAGCGATTAAAAAATTTTAACTAACAGGTAATAACTGATGAAAACACAAATCAAAAAAGTCTTAATATTAGGTAGTAGTTTACTGATGTTATCGTTACTGACAGGGTGCGATTTTACCGATTATAAAACGCGAATTTAAAATGGTTATGGCAAAGTTTGTATTAACACAAAAGTCAAAACTAAGTTTATTTTCATCTAAGAACTATTGAATTTATGTATCTCTATGAATTTATATTAAAAAATGATAGGTCTTGGTAAAAATGGAAAAATTAAAGTGAACCTGCTTTTTATTTTATAAAAATTAATTAGTTAAAAGTTTTTAAAAATTGAAAAAATTTGGTAGAATTTACCAATTTAAATAAGTTTATATAAAACATATAGATAAAATTAGA # Right flank : ATCCATGAAGGTGATGTTGAATATAAAACAGAACGTGGTTAGGAAATGTATTATTCAAAAATTATCAATTATTGAAAGTGTGAGGTGTTTAGTGCATCCTCATATAAATGGGTTTTAATTTAATTTTCCTTACCGCGAAGTTTTCTTGATAACCGTTTAAATCCATGAGTGAATTTTTTTATCGCCATTGCTAAAAATGGAACTTTTATTTTGATATTAAACCGTTCTTGTAATTCAATGGCGTCGTTAGCTTTGGTTAACCAGATAAACCCTGAGTTAGTTAAATCAATGGCTTTAATTTTTCCGTCCGGTGTTAAAATAAAGTTTCCACCATGGATATCATTTGAAACCAAGTTATAATGGTGAAGTTTTTCAACGCAGTGTTTTATTTGCTCTCCGTAATCTTTCATTTCGTCCCACGCTAGTGAGCGCCCTTCGATGAAGTTAAAAATCATGTAATGACGTTTCGTTTTTTCGTCAAAAGCAACAAGATAAAGTTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2381-1988 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000047.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 2380 26 100.0 35 .......................... CCGCAGCATATTTTTACGTTTTTGCTGGCGTTTTC 2319 26 100.0 35 .......................... CCGTTCGGCCACTTCGGTTAATTTAAAATCAACAT 2258 26 100.0 35 .......................... CCGGTGGTGCAGAGGCTGTCATTCCTTTAACGAAA 2197 26 100.0 36 .......................... CCGCTGATTTTCGCCGGAACTAACTTTATATCGCGC 2135 26 100.0 35 .......................... CCGACAGAAAAATACGAGATCGCTAAAGTCAAAAT 2074 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGATAATCCACAA 2013 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== ==================================== ================== 7 26 98.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAGCGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAG # Right flank : CCCTTTATCTTAATGCGAAAACCCTAACCCCACTTAATTGATAAAATTTTAAGTGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTGTGTAAAAATCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAGCAGATAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTATAGTTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAACGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 504-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000039.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 503 26 100.0 35 .......................... CCGCGACACATATTTAAATGAGGTAATACATGGCT 442 26 100.0 35 .......................... CCGCGCTACAAATCAAGCCTGAACAGTTAGATTTT 381 26 88.5 0 ......................AC.C | ========== ====== ====== ====== ========================== =================================== ================== 3 26 96.2 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATAAGTAAACTAATACAAGTTAGAATATTCCTAAAATTTGCAAACATACCACTACTAATCTCTAAATATCGATCGTTATAGGCATAGGAAGATTTTATTGGTTTGAAGTTATTATTGACGGATTCTTGAGTATAGTCTTTGGGCTTCTTTTGGCGTCATATTATCGCTAGTATAGCCCATTTTCAATTTTTTGTGGGGTTTGGGTTTTTTAAGCCTTGAGAGTACAAAGACTATTTATCCGCATAATGTTAAAAATATCGAAAATTATAACATAAAACTGGGTAAAATTAATATTTGTTTTTATTTAGGGAGATGTAATTTTCGTATCTTGATGAATTTATATTAAAAATAGAGTCATTTTGGTAGGGCGACATAAATTGAATTGAGCTTGTTTTTTTATTTTTTAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATGGCTACAATTAGA # Right flank : CCCCTTTATCTTAATGCTAAAACCCTAACCCCAGTTAATTGATAATATTTTAAGTGGGCTTAAAAGCAGCAACCTAAAAAAACATGGCTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTGTGTAAAAATCGTGTAATTTTATGCCTGATTTTGGTTATCATTACTGATTATTAAAATTACCGATAAAAATAGATAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTAAAGGAAAAAAAATGGTAAAACATTTAGATAAAATCGTCGAACAAGCAGGACAAGCAGGGAAAGACTTGCTTAGCCAATTAACCAATAAAGTTAACCA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56531-56139 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000039.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 56530 26 100.0 35 .......................... CCAGCATAATCAATGGGTGCACATTGGGTTTAGTC 56469 26 100.0 35 .......................... CCGAACAGGAATTAGAGCGAGCAATAGCAATAGTT 56408 26 100.0 35 .......................... CCGAAAAATAATATTTTTTCTGCTATAAATTTTTT 56347 26 100.0 35 .......................... CCGGCATTTACATTAGACGGTATTACAGGTATTTC 56286 26 100.0 35 .......................... CCGCATTGTGGACTGGTGATACTAAAAAAATAAAA 56225 26 100.0 35 .......................... CCGTAGTACCGTTATTTGAGCGCAATAACAATTAA 56164 26 96.2 0 ...................C...... | ========== ====== ====== ====== ========================== =================================== ================== 7 26 99.5 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGTTATAACTGTAAATAAAACAGATAGCTACAATTAG # Right flank : CTGAATATGTAACTTGTTCTCCTAAACTAACATTGCTAAAAAAATAGGCATTGATTCTACAGTCAAAAAACTTTGCCATAAATATGGAATCGGTACCTCAATTTTTCTATAAATGGCGAGAAAATACAGTGAAATGAAAACATCAGAAATCAAACTTTTAAAAGAGTAAGAAACAAAATCGAAAGTTTAATATGTTTATATTTTTCAGCTGATTATTGATATGTAAACTATTGACATAGTGACGAAACTGTATTTCCAAGGCAATTAAGTATATAATACCTTGCAAATTCAATTAATGATTATTACTAAACTTATACTTTTATGAAATCTTCAATTATCAGTAAGTTAGAAGCTCTACAAGAGCGTTATGAAGAGGTTCAAGCATTATTGTCTGACGCATCAGTTATCGCCGATCAAAATCGTTTTCGTTCTCTTTCTAAAGAATATTCACAATTAACCGATGTCGTTAAATGTTTTACTGACTGGAAACGGACGCAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22112-22442 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000050.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 22112 26 100.0 35 .......................... CCGTTCTTGCATCAGATTGTAACTTTCTGAACTGC 22173 26 100.0 35 .......................... CCGCAAGTGGTACTGATGCGGTGCTGTTCTATGCA 22234 26 100.0 35 .......................... CCGTTTTTGAATGAGCTTGATGAACGGATAAAACA 22295 26 100.0 35 .......................... CCTGCAGTCAGAGCTACAACATGGTAACCCTGTAC 22356 26 100.0 35 .......................... CCGAGGTGATAAGATTTAATTCTTATTCATTAACT 22417 26 96.2 0 .C........................ | ========== ====== ====== ====== ========================== =================================== ================== 6 26 99.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TCCCAAATCACCTGTTGATTGCGAACGGCGATCTTCAATATTATCACTCTCTCTTTGGTCTCTCCAACGCATAGTAATTATCTCATCAGTTTTGGTAAGTTTATTTTAAAGGATAATAGAAAAGGATACTAGGTTAAAGTTTCTACAATTTTGGTGTGATTTTGATTTTATGCGTATTACGTTTTGAGCATAAAAATTATTGTTAGTCTAAAGATTAACCCTTACGAAAGTAAAACCGATTCCTTATTAAAAGGTCGGAAACTATAACCATAAAAAAATCGGTAAGAATTAATATTTTTTTATCTAACTATTGTTTAATTTACGTATCATGATGAATTTACATTAAAAATTGGTACATTTTGGTAAAACGACATAAATTAAAGTAATCTTACTTATAGTATATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : ATTCTAAACAGCATTAGTTAGCGTTGTTTTAAAATAGTCATGATTGGATGCAGCAAGCTTTAAATTCTTTTGTGGTTAGGTTTCGGACGTTTAGTCTTTAGTGACACTAAAATGAATGTAGTGTTCACGTCCGAGTAAAGGAAATTTAGCGTGAAATTTCCTTTACAATCCTAAGCTCGCCGCCAGAAGTACTGGTCACTGCGTGACTGCCCTCGCTTTGTTAATTAGCATTAAACGAACCGATGAGTATTGCACTTCCTTGTGCGCCCTCATCTCATTTGGCATCCTGCCCAATGTTCTATGCTAATTAACTCACTCGGCAGTACTTAAGCGGAAATACAAATTCAATGATTTAATTAGATTTTTAACATCATTAATAAAAATTTATTGTCTATCCACTTAATAATTGTTTGTGCTAATTCCGTGCCATACAAAGTGCTGACAACTAAGGCTGGTTAGCAAGTCAAACAAGGCGGTTTGGCAAGTTCGTGTTTTGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1081-689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000006.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1080 26 100.0 35 .......................... CCGAGCAGAAGGTAATTACATTGTATGCGATGCGT 1019 26 100.0 35 .......................... CCGTAAATGGCGAAGGTGATCCGCAATTCAGCGCA 958 26 100.0 35 .......................... CCGCAACAACACCAATCGTGCGCACTATTACCGAC 897 26 100.0 35 .......................... CCGCGAGCTTGGTTGTAGTGAGGGTAATGTTAGAA 836 26 100.0 35 .......................... CCGACAGAAAAATACGAGATCGCTAAAGTCAAAAT 775 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGGTAATCCACAA 714 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== =================================== ================== 7 26 98.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAG # Right flank : CCCTTTATCTTAATGCGAAAACCCTAACCCCACTTAATTAATAAAATTTTAAGTGGGGCTTAAAAGCAGCAATCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAATTAAATATTGCAAATTCTATAAAAACCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAATAGGTAAATACGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTATAGTTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAACGCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1081-1411 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000057.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1081 26 100.0 35 .......................... CCGTGTCCAATATTGATCTGGCGATTATTCGGATG 1142 26 100.0 35 .......................... CCGATTAAATTATGAGACCAGCAACTTTTGCACTC 1203 26 100.0 35 .......................... CCGGCTAAAGAATGGCTTCTGAGATTTGGGATAGT 1264 26 100.0 35 .......................... CCGTTCAATATGAGCGTTGAAACAGCAGCGGAAGC 1325 26 100.0 35 .......................... CCGCGGTTGTTATTAAATGTATCGGGCATCGAACT 1386 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 6 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TAATAATCAATAATGATAACTAAAATCAGGCATAAAATTACACGATTTTTACACAATTTGCAATATTTAATTGAAGTTAATTTATTGAAATTTAAGATAAGCTTAGTGAGTCATGTTTTTTTAGGTTGCTGCTTTTAAGCCCACTTAAAATTTTATCAATTAACTGGGGTTAGGGTTTTCGCATTAAGATAGAGGGAATATCTTTTCGTAATCAGGAGTAAACCACCAATAAAAAAGGGAATTAATCTAAAACAGTTATGATAAATCTTGTACCAATACGAAAACAAAAGGTGATGTTTTTTATTTAGGCTCAATCAAATACTGCATCTTATTGAATTTAAAATAAAAAAAATTTTTTATTGGTAGAACGGTAGAAATTAAAACAAGCCTACTTATGACTTTTTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : ATTACCCTAGAATCTTTCACATTCGCTTCAATTTTACAAAAAAGCGGAATATTGCTATACTTATCTACTTAATTTCCACGAAAAGGAATTGTTTTGTCGATATTCATTTAAAATTTAACTTACCGACATAACAACAGTTTTTGCTTTTTTATTATCCTCTATTTTTTATCTTTGCTTGATTTTTCGTCAAATTTAATTAATTGAAACACATAGTTAATATGTAATTTAAAACGTATTTATTCTGTATTAATAAGTAACCGATTTATTTTGTTGCATTATTCCTTTTCTTTTATTTGCATAAAAAAGGCGGTATTTTATGAATAAAACAATAGACTCTAAAAATAAACCCTTAAGTATAAATGATATTACCATTATTGATGATAGTAAGTTAAAAAAAGCGATAACCGCAGCAGCACTCGGGAACGCTATGGAATGGTTCGATTTTGGGGTTTATGGTTTTTTAGCTTATGTTTTAGGGCAAGTGTTTTTTCCTGATGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19732-19278 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHI01000057.1 Gilliamella apicola strain Choc6-1 Gilliamella_apicola_Choc6-1_contig60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 19731 26 100.0 35 .......................... CCGCTCCTCCCGATGTCGGTTGTAATGCGTTATGT 19670 26 100.0 36 .......................... CCGTCCGCGTATGTTGTAGTATCAACAACTATACAA 19608 26 100.0 35 .......................... CCGCTTTAGCGACAAAGTTTAAAAACGCATTATTT 19547 26 100.0 35 .......................... CCGTAAACTATTTAAACTCAAACGGAATTGTCACT 19486 26 100.0 35 .......................... CCGTTATACATTTTCCTCATAATGACGCTCGCCTT 19425 26 100.0 35 .......................... CCGACGCTAGAGATGATTGGATTGAGGCTAGAGCC 19364 26 100.0 35 .......................... CCGAATTTTTACACTTTCCGCAAATCGCTATGCCT 19303 26 96.2 0 .A........................ | ========== ====== ====== ====== ========================== ==================================== ================== 8 26 99.5 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AACTTAACAGGCTATGCTGGAGGCATTGATAAAAAAATTAAGCTACTACAAATTGAAGGCATTGATACTCAAAAATTTTATCGCCCAACTAAAGGAACAGCACTTTAAAACAAAAATATAATTCAGCAAACTATAAAGAGAAACAGTAAATATCTACTTTAGAATATTTTAGCTTTAATTGAATAATAAATATTAAATGATCGCCAGATCGGATTAATTAATATTTTTAGCATTTATACCGTTAAAATTAAAAAGTTTCTTAATTTTCAAATTGAAACAAATATTTTGATTAAAATTTTTTATTTAGATACAATAAAATTTAAATATCCTATTGAATTTAAATTAAAAATTGGTGATTTTTGGTAGAATAGCATAAATTGAATTGAGCTTGTTTTTTATTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTCAAAAAATCTGGTAGAATTTATCACCTACTATAACTGCAAATAAAACAGATAGATACGATTAGA # Right flank : CCGGCTTTGCACAGCTTTCCAATACCATTGTCAGCAAATGGTTAAGGTGCTAGCTTCTTTGTTGATTGGTTATATTAATTAAATATCACACAATGCGCTGACAATTAAAGTTAACCTGTCAAATACGAACATTTGATAATGTTCATGCCTTGTTTAGGAAAATCACAAATGATTCGAAAAACTGGACGAGCATAGAAGAGGCAATTCCCATGCGACCACTTTGTTTCTAGCATCTGCATCGAGATTGTAAAGAAGGTTCGCCAAACTCTCTGCTCAGACATTACCAAAAAATTAATTGTATTTCGCAAAAGATAAAAACGCCTCAAATCCTAACTGTACTGAAAAATTTAAAGCTTACAGCACCAAATGGTTGCCATTTTAAAACAACGCTAACTAATGCCGTTTAGAGTTTATTTCTGTATATAGAGAACACGTTAATATGGTTATGAATAAAAAAGGATGCTCCTTGATCAATAAATTAATTATTTTCTATGATTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //