Array 1 1016982-1019631 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023337.1 Klebsiella pneumoniae strain MH15-269M chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1016982 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1017043 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1017104 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1017165 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1017227 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1017288 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1017349 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1017410 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1017471 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1017532 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1017593 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 1017654 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 1017715 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 1017776 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 1017837 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 1017898 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 1017959 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1018020 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 1018081 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1018142 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 1018203 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 1018264 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 1018325 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 1018386 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 1018447 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1018508 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1018569 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1018630 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1018691 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1018752 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1018813 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1018874 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1018935 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1018996 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1019057 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1019118 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1019179 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1019240 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1019301 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1019362 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1019423 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1019484 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1019545 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1019603 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30068-31249 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023338.1 Klebsiella pneumoniae strain MH15-269M plasmid pMH15-269M_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30068 29 100.0 32 ............................. TAACTTTACCCCGGATCCTGATGAACCTGTAC 30129 29 100.0 32 ............................. TAACTTTACCCCGGATCCTGATGAACCTGTAC 30190 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 30251 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 30312 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 30373 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 30434 29 89.7 25 .....T......CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [30488] 30488 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 30549 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 30610 29 93.1 32 ............CA............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 30671 29 93.1 32 ............CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 30732 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 30793 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [30804] 30855 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [30866] 30917 29 93.1 32 ............CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [30928] 30979 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 31040 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 31100 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 31161 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 31222 28 79.3 0 ..........A.CA..T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 93.3 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //