Array 1 37570-37139 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCMA01000003.1 Lactobacillus apis strain Dan63 NODE_3_length_223452_cov_60.8499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37569 36 100.0 30 .................................... ATACCGGCTGGGGACTTGCAATTAGTGACA 37503 36 100.0 30 .................................... ATCGGGATTGTGCCATATCTTTACGCCGTT 37437 36 100.0 30 .................................... ATCGGGATTGTGCCATATCTTTACGCCGTT 37371 36 100.0 30 .................................... TTATTAGCATGTGCTACTGTGCCTAGTATT 37305 36 100.0 30 .................................... TTAAAGATCCTGGCAAGGGTACGATGTTTA 37239 36 100.0 30 .................................... GAAAAAGGCGTAATGGCTATCCAATAAGGC 37173 35 88.9 0 .........................C-......GG. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Left flank : AGTGAAGACATATCGAAAAGATATTTAACCCTTATAATTAACAGCTATGCGAAGACTATAGACGAAGAAAATAGAAATAAAGTCTTTAAAGCTTATTACAACCTAGAGACTGTATTGCATGATTCACTTTTACTAGAAGATCTTCCGATAGACATTGACTTTAACGAAGATTTGAAAAAGCTGTTAAAGTTGTTGGAAATTCATTTTGATAGAAGTATATTAACTAATCCATATGCTATAATAGAAACTGCTCTAAAAATTCATCAAAATTATGATTTGGGGACAATTCCTGTGTTTTGTAATGTAGCGCATTATGTTGATGAGCAGGAATGGCAAGAGGTAGCTAATCTTGCTATGGAAGTCAATTCAAGTGTGATTTTTCTTGAATTTACTAATCCTCAAAATTTGAAAATATCTAAAAACATTACTTGTTATTATATAGATCAAGATCTAGTCGATTGGTACTAACTGCTATATTAAAATTTGATTATAAAAAATCG # Right flank : TGTTTTTATTGATATTTGTCAAGATCTAAATCAAATAGTGTTTCAATATCTGTATTAAAATACTTTGCTAATTTGTATGCAATGTTAATGGTTACATTGGTTTTAGACTTATTACTTTCTATCTTTCTAATATAAGCTACTGATACACCAATTACTATGGCTAAATTCTCTTGTGATATTCCGGCTAAATGTCTAAATTCTGCTAATCTGTTGTGCATTATTACGCTCCCTAAGTGGTTTTTTGTTGGGTTCAATATATATACTATTTTATATGGAAGTCAAGCTTGCGGCGCTCTGTTAATATACTGATAGCTAGTGCTGTGCTTTCATGTATTTAAGGTTTTAGGTAGCTGTTAAATAGACGATAATTAGAAGCAAAAAGCCCTTTCTCCAATTAATTGAATTAATCCAAGACATAGTATAATTACATAAAGAAAAAACGCGCCAGATAGAGCGCGCTTTTATTTTGCTAAAATAAAGTCTAAGTATGACTAGTTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 161073-161439 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCMA01000001.1 Lactobacillus apis strain Dan63 NODE_1_length_860981_cov_36.9845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 161073 36 100.0 30 .................................... ATGATAGCGAAGACAGTAATACAGCTAAAA 161139 36 100.0 31 .................................... CCATCAACACTAGTTTTAGCGAACCACCCAA 161206 36 100.0 30 .................................... CATAGTCATGCCTTTCAGGCTTACTTTTAT 161272 36 100.0 30 .................................... GACTGTGAGCATGGGATAGGTGCATACAGA 161338 36 100.0 30 .................................... TCATTCTGATGAGGATAATTTTGTGTCATT 161404 36 91.7 0 ..........G...............AA........ | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.6 30 GTTTTAGATGATTGTTAAATCAATGATGGTTAGAAC # Left flank : GCAATGGGTGAGTTTTATGCTGGTCAAGTCGTGGCTGGGTATCAAAATGCGCTTGATATTGATGGTGACCAGGAAATGATTGCCCGTCGTCAGAAAGTCAGTGTTTCAGAATATGAGCAAATTTTTACTCAGGCACTTGAACTTCCTCAAGATAACCTTGAATTAGAGAGTGATGAAGAAACCGGTTCTTGGTACTTTGCTGGAACTAAAGATCACGTTCGTCAATACAAGCAAAAATAAATTTAGACCCTAAAGTTGGGTCTTTTTTATGCACATTTTTATAAAAAGTGAAACCAAAACATTAAGCTAATTAACCCTTGTGCTATAATTTAGGTGATTTAATTTTAATCTAAAAGTTTTTGAACTAAAAATGTAGCTAGTTTTTAATTCAAAAGTGTGTTTTTCGCAATTACGAGGTAGTTGGGTTGACGAAAAGTACTTTGATAATTCCCGGAACTATTTTTGATAAGACAACATTAAAAAATGATGATAAAAAATCG # Right flank : CTGCAGCCAGAAGTTACAGCAGCTGACGTTTGTTTTAGATGGTTGTTAATTCAAAAGAGTGAAACTAATACATAATATTAAAAGATGGTTGAAAATAGAGACACTAAAAATGATCAGTGGAAAGCATATAGTCAGCAGGAAGAATTAAAAAAGAATCGAAGGGAAGCCTTTAAACGAGCAGGCATCCTTACTGATGAAAAATTCTATAAGCTAACGACAAGTGAGCGACTTGAATATGTCGAAAAACAAAATGCGTTACATATGCCAGTAACTGTAGAGCGTGACACACCTTATGATGCTAACTTTCAAGTGAAAAAATCAGGTAAAGAGAAAAAAGTAGATGTTGACGCTAAGATTAGACATGCACAAACTAAGGGCTTTATTATGAACGTTTTAGGTTTATTAGCTCTAATTGATATAATCCATAACTGGTGGGGACCGTCAAAATAGTTAAGAACAAGTGGTAATTACCTAGCCTAGGAGATGACAAAAGATACTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAAATCAATGATGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //