Array 1 45852-47980 **** Predicted by CRISPRDetect 2.4 ***
>NZ_ORYC01000177.1 Xanthomonas fragariae strain CFBP 5253 isolate CFBP 5253, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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45852 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG
45912 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC
45973 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA
46033 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT
46093 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA
46153 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC
46213 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG
46273 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC
46333 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC
46393 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT
46453 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC
46513 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT
46573 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC
46633 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA
46693 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC
46753 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC
46813 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC
46873 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA
46933 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC
46993 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG
47053 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC
47113 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT
47173 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG
47233 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC
47293 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT
47353 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT
47413 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG
47473 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC
47533 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG
47593 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA
47653 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT
47713 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT
47773 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC
47833 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG
47893 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT
47953 28 100.0 0 ............................ |
========== ====== ====== ====== ============================ ================================= ==================
36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT
# Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGCCAGGTA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
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